RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-215ENST00000544504 C1orf123Q9NWV4 160 aa8.04□□□□□ -1.12
YBX3-215ENST00000544504 EXTL2Q9UBQ6 330 aa8.04□□□□□ -1.12
YBX3-215ENST00000544504 PPP1R3CQ9UQK1 317 aa8.04□□□□□ -1.12
YBX3-215ENST00000544504 NPTNQ9Y639 398 aa8.04□□□□□ -1.12
YBX3-215ENST00000544504 H7C417 338 aa8.03□□□□□ -1.12
YBX3-215ENST00000544504 SMAD7O15105 426 aaKnown RBP8.03□□□□□ -1.12
YBX3-215ENST00000544504 XRCC3O43542 346 aa8.03□□□□□ -1.12
YBX3-215ENST00000544504 EIF4EP06730 217 aaKnown RBP8.03□□□□□ -1.12
YBX3-215ENST00000544504 ELK1P19419 428 aa8.03□□□□□ -1.12
YBX3-215ENST00000544504 CD40LGP29965 261 aa8.03□□□□□ -1.12
YBX3-215ENST00000544504 MNDAP41218 407 aa8.03□□□□□ -1.12
YBX3-215ENST00000544504 RBM11P57052 281 aaKnown RBP8.03□□□□□ -1.12
YBX3-215ENST00000544504 MRPS11P82912 194 aaKnown RBP8.03□□□□□ -1.12
YBX3-215ENST00000544504 UNC119Q13432 240 aa8.03□□□□□ -1.12
YBX3-215ENST00000544504 SPIN3Q5JUX0 258 aa8.03□□□□□ -1.12
YBX3-215ENST00000544504 TMEM69Q5SWH9 247 aa8.03□□□□□ -1.12
YBX3-215ENST00000544504 C11orf71Q6IPW1 123 aa8.03□□□□□ -1.12
YBX3-215ENST00000544504 PRSS57Q6UWY2 283 aa8.03□□□□□ -1.12
YBX3-215ENST00000544504 FAM131AQ6UXB0 335 aa8.03□□□□□ -1.12
YBX3-215ENST00000544504 WDR82Q6UXN9 313 aa8.03□□□□□ -1.12
YBX3-215ENST00000544504 C1QL2Q7Z5L3 287 aa8.03□□□□□ -1.12
YBX3-215ENST00000544504 FAM58AQ8N1B3 248 aa8.03□□□□□ -1.12
YBX3-215ENST00000544504 LRRC75A-AS1Q8N1F1 130 aa8.03□□□□□ -1.12
YBX3-215ENST00000544504 TMEM158Q8WZ71 300 aa8.03□□□□□ -1.12
YBX3-215ENST00000544504 EMG1Q92979 244 aaKnown RBP8.03□□□□□ -1.12
YBX3-215ENST00000544504 SLC25A38Q96DW6 304 aa8.03□□□□□ -1.12
YBX3-215ENST00000544504 Q96M66 194 aa8.03□□□□□ -1.12
YBX3-215ENST00000544504 VRK1Q99986 396 aaPredicted RBP8.03□□□□□ -1.12
YBX3-215ENST00000544504 GAL3ST1Q99999 423 aa8.03□□□□□ -1.12
YBX3-215ENST00000544504 NRIP2Q9BQI9 281 aa8.03□□□□□ -1.12
YBX3-215ENST00000544504 SELENOIQ9C0D9 397 aa8.03□□□□□ -1.12
YBX3-215ENST00000544504 SEBOXQ9HB31 216 aaPredicted RBP8.03□□□□□ -1.12
YBX3-215ENST00000544504 GCM1Q9NP62 436 aa8.03□□□□□ -1.12
YBX3-215ENST00000544504 AKIP1Q9NQ31 210 aa8.03□□□□□ -1.12
YBX3-215ENST00000544504 UFSP2Q9NUQ7 469 aa8.03□□□□□ -1.12
YBX3-215ENST00000544504 MTCH1Q9NZJ7 389 aa8.03□□□□□ -1.12
YBX3-215ENST00000544504 RNF7Q9UBF6 113 aa8.03□□□□□ -1.12
YBX3-215ENST00000544504 ST3GAL6Q9Y274 331 aa8.03□□□□□ -1.12
YBX3-215ENST00000544504 TLN2Q9Y4G6 2542 aa8.03□□□□□ -1.12
YBX3-215ENST00000544504 ROS1P08922 2347 aa8.02□□□□□ -1.13
YBX3-215ENST00000544504 IGKV1-12A0A0C4DH73 117 aa8.02□□□□□ -1.13
YBX3-215ENST00000544504 SRRM5B3KS81 715 aa8.02□□□□□ -1.13
YBX3-215ENST00000544504 SYNGR1O43759 233 aa8.02□□□□□ -1.13
YBX3-215ENST00000544504 F12P00748 615 aaPredicted RBP8.02□□□□□ -1.13
YBX3-215ENST00000544504 KNG1P01042 644 aa8.02□□□□□ -1.13
YBX3-215ENST00000544504 IGKV1D-12P01611 117 aa8.02□□□□□ -1.13
YBX3-215ENST00000544504 GLAP06280 429 aa8.02□□□□□ -1.13
YBX3-215ENST00000544504 GSTP1P09211 210 aaKnown RBP8.02□□□□□ -1.13
YBX3-215ENST00000544504 PRKACAP17612 351 aa8.02□□□□□ -1.13
YBX3-215ENST00000544504 BCL3P20749 454 aa8.02□□□□□ -1.13
YBX3-215ENST00000544504 GLRA1P23415 457 aa8.02□□□□□ -1.13
YBX3-215ENST00000544504 ERVK11-1P61568 191 aa8.02□□□□□ -1.13
YBX3-215ENST00000544504 CCL8P80075 99 aa8.02□□□□□ -1.13
YBX3-215ENST00000544504 IL18Q14116 193 aa8.02□□□□□ -1.13
YBX3-215ENST00000544504 MPPED2Q15777 294 aa8.02□□□□□ -1.13
YBX3-215ENST00000544504 KCNJ8Q15842 424 aa8.02□□□□□ -1.13
YBX3-215ENST00000544504 HFEQ30201 348 aa8.02□□□□□ -1.13
YBX3-215ENST00000544504 PRAMEF6Q5VXH4 476 aa8.02□□□□□ -1.13
YBX3-215ENST00000544504 OR10K2Q6IF99 312 aa8.02□□□□□ -1.13
YBX3-215ENST00000544504 RNF144BQ7Z419 303 aa8.02□□□□□ -1.13
YBX3-215ENST00000544504 MOGAT3Q86VF5 341 aa8.02□□□□□ -1.13
YBX3-215ENST00000544504 FAM89BQ8N5H3 189 aa8.02□□□□□ -1.13
YBX3-215ENST00000544504 GDPD1Q8N9F7 314 aa8.02□□□□□ -1.13
YBX3-215ENST00000544504 TMEM104Q8NE00 496 aa8.02□□□□□ -1.13
YBX3-215ENST00000544504 OR4M1Q8NGD0 313 aa8.02□□□□□ -1.13
YBX3-215ENST00000544504 OR10K1Q8NGX5 313 aa8.02□□□□□ -1.13
YBX3-215ENST00000544504 OR10R2Q8NGX6 335 aa8.02□□□□□ -1.13
YBX3-215ENST00000544504 LRRC29Q8WV35 223 aa8.02□□□□□ -1.13
YBX3-215ENST00000544504 GTF3AQ92664 365 aaKnown RBP8.02□□□□□ -1.13
YBX3-215ENST00000544504 RAB3CQ96E17 227 aa8.02□□□□□ -1.13
YBX3-215ENST00000544504 Q96MF0 132 aa8.02□□□□□ -1.13
YBX3-215ENST00000544504 NEDD4LQ96PU5 975 aa8.02□□□□□ -1.13
YBX3-215ENST00000544504 NKX3-1Q99801 234 aaPredicted RBP8.02□□□□□ -1.13
YBX3-215ENST00000544504 LPAR5Q9H1C0 372 aa8.02□□□□□ -1.13
YBX3-215ENST00000544504 BANF2Q9H503 90 aa8.02□□□□□ -1.13
YBX3-215ENST00000544504 CXorf56Q9H5V9 222 aa8.02□□□□□ -1.13
YBX3-215ENST00000544504 HES4Q9HCC6 221 aa8.02□□□□□ -1.13
YBX3-215ENST00000544504 IGHV1-69-2A0A0G2JMI3 117 aa8.01□□□□□ -1.13
YBX3-215ENST00000544504 SERPINE3A8MV23 424 aa8.01□□□□□ -1.13
YBX3-215ENST00000544504 SULT1C2O00338 296 aa8.01□□□□□ -1.13
YBX3-215ENST00000544504 SH2D1BO14796 132 aa8.01□□□□□ -1.13
YBX3-215ENST00000544504 CTDSPLO15194 276 aa8.01□□□□□ -1.13
YBX3-215ENST00000544504 CA11O75493 328 aa8.01□□□□□ -1.13
YBX3-215ENST00000544504 RHBDL1O75783 438 aa8.01□□□□□ -1.13
YBX3-215ENST00000544504 FSTL3O95633 263 aa8.01□□□□□ -1.13
YBX3-215ENST00000544504 IFNA2P01563 188 aa8.01□□□□□ -1.13
YBX3-215ENST00000544504 CD8AP01732 235 aa8.01□□□□□ -1.13
YBX3-215ENST00000544504 SFTPBP07988 381 aa8.01□□□□□ -1.13
YBX3-215ENST00000544504 SOD3P08294 240 aa8.01□□□□□ -1.13
YBX3-215ENST00000544504 MUC1P15941 1255 aaPredicted RBP8.01□□□□□ -1.13
YBX3-215ENST00000544504 FUT3P21217 361 aa8.01□□□□□ -1.13
YBX3-215ENST00000544504 CDK2P24941 298 aa8.01□□□□□ -1.13
YBX3-215ENST00000544504 BLVRBP30043 206 aaPredicted RBP8.01□□□□□ -1.13
YBX3-215ENST00000544504 PMELP40967 661 aa8.01□□□□□ -1.13
YBX3-215ENST00000544504 NPBWR2P48146 333 aa8.01□□□□□ -1.13
YBX3-215ENST00000544504 VEGFCP49767 419 aa8.01□□□□□ -1.13
YBX3-215ENST00000544504 EFNB2P52799 333 aa8.01□□□□□ -1.13
YBX3-215ENST00000544504 PPP5CP53041 499 aa8.01□□□□□ -1.13
YBX3-215ENST00000544504 RBM39Q14498 530 aaKnown RBP8.01□□□□□ -1.13
YBX3-215ENST00000544504 PNLIPRP3Q17RR3 467 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms