RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 PPIAP62937 165 aaKnown RBP8.52□□□□□ -1.05
SS18-205ENST00000542420 CEACAM21Q3KPI0 293 aa8.52□□□□□ -1.05
SS18-205ENST00000542420 PAN3Q58A45 887 aaKnown RBP8.52□□□□□ -1.05
SS18-205ENST00000542420 UQCC3Q6UW78 93 aa8.52□□□□□ -1.05
SS18-205ENST00000542420 KCTD9Q7L273 389 aa8.52□□□□□ -1.05
SS18-205ENST00000542420 TUSC5Q8IXB3 177 aa8.52□□□□□ -1.05
SS18-205ENST00000542420 CPEB3Q8NE35 698 aaKnown RBP8.52□□□□□ -1.05
SS18-205ENST00000542420 SLC30A7Q8NEW0 376 aa8.52□□□□□ -1.05
SS18-205ENST00000542420 OR5L1Q8NGL2 311 aa8.52□□□□□ -1.05
SS18-205ENST00000542420 OR1S1Q8NH92 325 aa8.52□□□□□ -1.05
SS18-205ENST00000542420 POM121L2Q96KW2 1035 aa8.52□□□□□ -1.05
SS18-205ENST00000542420 SPACA1Q9HBV2 294 aa8.52□□□□□ -1.05
SS18-205ENST00000542420 ZNF701Q9NV72 531 aaPredicted RBP8.52□□□□□ -1.05
SS18-205ENST00000542420 RCC2Q9P258 522 aaKnown RBP8.52□□□□□ -1.05
SS18-205ENST00000542420 MBD2Q9UBB5 411 aa8.52□□□□□ -1.05
SS18-205ENST00000542420 TUBD1Q9UJT1 453 aa8.52□□□□□ -1.05
SS18-205ENST00000542420 KCNIP3Q9Y2W7 256 aa8.52□□□□□ -1.05
SS18-205ENST00000542420 TRBV6-6A0A0A6YYG2 114 aa8.52□□□□□ -1.05
SS18-205ENST00000542420 OR5B21A6NL26 309 aa8.52□□□□□ -1.05
SS18-205ENST00000542420 GALR2O43603 387 aaPredicted RBP8.52□□□□□ -1.05
SS18-205ENST00000542420 EIF3GO75821 320 aaKnown RBP eCLIP8.52□□□□□ -1.05
SS18-205ENST00000542420 OR5H8P0DN80 308 aa8.52□□□□□ -1.05
SS18-205ENST00000542420 TPT1P13693 172 aaKnown RBP8.52□□□□□ -1.05
SS18-205ENST00000542420 PGAM2P15259 253 aa8.52□□□□□ -1.05
SS18-205ENST00000542420 FGF12P61328 243 aa8.52□□□□□ -1.05
SS18-205ENST00000542420 SRPXP78539 464 aa8.52□□□□□ -1.05
SS18-205ENST00000542420 ALKAL2Q6UX46 152 aa8.52□□□□□ -1.05
SS18-205ENST00000542420 RTN4RL2Q86UN3 420 aa8.52□□□□□ -1.05
SS18-205ENST00000542420 ZDHHC23Q8IYP9 409 aa8.52□□□□□ -1.05
SS18-205ENST00000542420 CCDC71LQ8N9Z2 235 aa8.52□□□□□ -1.05
SS18-205ENST00000542420 DMBX1Q8NFW5 382 aa8.52□□□□□ -1.05
SS18-205ENST00000542420 OR10AD1Q8NGE0 317 aa8.52□□□□□ -1.05
SS18-205ENST00000542420 NANPQ8TBE9 248 aa8.52□□□□□ -1.05
SS18-205ENST00000542420 ZNF775Q96BV0 537 aaPredicted RBP8.52□□□□□ -1.05
SS18-205ENST00000542420 SYT3Q9BQG1 590 aa8.52□□□□□ -1.05
SS18-205ENST00000542420 RNF126Q9BV68 326 aa8.52□□□□□ -1.05
SS18-205ENST00000542420 ZDBF2Q9HCK1 2354 aa8.51□□□□□ -1.05
SS18-205ENST00000542420 LOC100509620A0A075B734 347 aa8.51□□□□□ -1.05
SS18-205ENST00000542420 IGKV1-12A0A0C4DH73 117 aa8.51□□□□□ -1.05
SS18-205ENST00000542420 CDRT15L2A8MXV6 281 aa8.51□□□□□ -1.05
SS18-205ENST00000542420 CCSO14618 274 aa8.51□□□□□ -1.05
SS18-205ENST00000542420 IFNA21P01568 189 aa8.51□□□□□ -1.05
SS18-205ENST00000542420 IGKV1D-12P01611 117 aa8.51□□□□□ -1.05
SS18-205ENST00000542420 CTXN2P0C2S0 81 aa8.51□□□□□ -1.05
SS18-205ENST00000542420 GLP1RP43220 463 aa8.51□□□□□ -1.05
SS18-205ENST00000542420 SNTB1Q13884 538 aaKnown RBP8.51□□□□□ -1.05
SS18-205ENST00000542420 IL13RA2Q14627 380 aa8.51□□□□□ -1.05
SS18-205ENST00000542420 ZNF124Q15973 351 aa8.51□□□□□ -1.05
SS18-205ENST00000542420 TAF9Q16594 264 aa8.51□□□□□ -1.05
SS18-205ENST00000542420 ANKRD55Q3KP44 614 aa8.51□□□□□ -1.05
SS18-205ENST00000542420 MRPL21Q7Z2W9 205 aaKnown RBP8.51□□□□□ -1.05
SS18-205ENST00000542420 NUFIP2Q7Z417 695 aaKnown RBP8.51□□□□□ -1.05
SS18-205ENST00000542420 OR51F2Q8NH61 342 aa8.51□□□□□ -1.05
SS18-205ENST00000542420 PIGCQ92535 297 aa8.51□□□□□ -1.05
SS18-205ENST00000542420 ZNF2Q9BSG1 426 aaPredicted RBP8.51□□□□□ -1.05
SS18-205ENST00000542420 PKIBQ9C010 78 aa8.51□□□□□ -1.05
SS18-205ENST00000542420 ST3GAL6Q9Y274 331 aa8.51□□□□□ -1.05
SS18-205ENST00000542420 CSAG2Q9Y5P2 127 aa8.51□□□□□ -1.05
SS18-205ENST00000542420 RAB19A4D1S5 217 aa8.51□□□□□ -1.05
SS18-205ENST00000542420 EEF1E1-BLOC1S5C9J1V9 151 aa8.51□□□□□ -1.05
SS18-205ENST00000542420 TEX46H3BTG2 121 aa8.51□□□□□ -1.05
SS18-205ENST00000542420 H7C2Y5 167 aa8.51□□□□□ -1.05
SS18-205ENST00000542420 FGF16O43320 207 aa8.51□□□□□ -1.05
SS18-205ENST00000542420 SPRY1O43609 319 aaPredicted RBP8.51□□□□□ -1.05
SS18-205ENST00000542420 IGHV2-70P01814 119 aa8.51□□□□□ -1.05
SS18-205ENST00000542420 IGHG3P01860 377 aa8.51□□□□□ -1.05
SS18-205ENST00000542420 APOC3P02656 99 aa8.51□□□□□ -1.05
SS18-205ENST00000542420 LIPCP11150 499 aa8.51□□□□□ -1.05
SS18-205ENST00000542420 TUBG1P23258 451 aa8.51□□□□□ -1.05
SS18-205ENST00000542420 PTGER4P35408 488 aa8.51□□□□□ -1.05
SS18-205ENST00000542420 RND3P61587 244 aa8.51□□□□□ -1.05
SS18-205ENST00000542420 NKAPLQ5M9Q1 402 aa8.51□□□□□ -1.05
SS18-205ENST00000542420 EIF5AL1Q6IS14 154 aaKnown RBP8.51□□□□□ -1.05
SS18-205ENST00000542420 IGFL2Q6UWQ7 119 aa8.51□□□□□ -1.05
SS18-205ENST00000542420 DHRS13Q6UX07 377 aa8.51□□□□□ -1.05
SS18-205ENST00000542420 ZNF611Q8N823 705 aa8.51□□□□□ -1.05
SS18-205ENST00000542420 OR1K1Q8NGR3 316 aa8.51□□□□□ -1.05
SS18-205ENST00000542420 SFT2D1Q8WV19 159 aa8.51□□□□□ -1.05
SS18-205ENST00000542420 MOB3AQ96BX8 217 aa8.51□□□□□ -1.05
SS18-205ENST00000542420 WDYHV1Q96HA8 205 aa8.51□□□□□ -1.05
SS18-205ENST00000542420 GMPPAQ96IJ6 420 aaPredicted RBP8.51□□□□□ -1.05
SS18-205ENST00000542420 SEC22AQ96IW7 307 aa8.51□□□□□ -1.05
SS18-205ENST00000542420 SULT4A1Q9BR01 284 aa8.51□□□□□ -1.05
SS18-205ENST00000542420 ZNF251Q9BRH9 671 aa8.51□□□□□ -1.05
SS18-205ENST00000542420 CALHM2Q9HA72 323 aa8.51□□□□□ -1.05
SS18-205ENST00000542420 BIN3Q9NQY0 253 aa8.51□□□□□ -1.05
SS18-205ENST00000542420 TUBG2Q9NRH3 451 aa8.51□□□□□ -1.05
SS18-205ENST00000542420 STARD10Q9Y365 291 aa8.51□□□□□ -1.05
SS18-205ENST00000542420 TRGV5A0A0B4J1U4 118 aa8.5□□□□□ -1.05
SS18-205ENST00000542420 DUXBA0A1W2PPF3 345 aa8.5□□□□□ -1.05
SS18-205ENST00000542420 FAM166BA8MTA8 275 aa8.5□□□□□ -1.05
SS18-205ENST00000542420 SPDEFO95238 335 aa8.5□□□□□ -1.05
SS18-205ENST00000542420 RLN2P04090 185 aa8.5□□□□□ -1.05
SS18-205ENST00000542420 IFNA4P05014 189 aa8.5□□□□□ -1.05
SS18-205ENST00000542420 CELA3AP09093 270 aa8.5□□□□□ -1.05
SS18-205ENST00000542420 WNT2P09544 360 aa8.5□□□□□ -1.05
SS18-205ENST00000542420 ZNF728P0DKX0 622 aa8.5□□□□□ -1.05
SS18-205ENST00000542420 APLNRP35414 380 aa8.5□□□□□ -1.05
SS18-205ENST00000542420 PRDX4Q13162 271 aa8.5□□□□□ -1.05
SS18-205ENST00000542420 TRIP6Q15654 476 aaKnown RBP8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms