RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 MAS1P04201 325 aa12.99□□□□□ -0.33
RPAIN-206ENST00000539417 IGHV4-38-2P0DP08 117 aa12.99□□□□□ -0.33
RPAIN-206ENST00000539417 MMP9P14780 707 aa12.99□□□□□ -0.33
RPAIN-206ENST00000539417 CPEP16870 476 aa12.99□□□□□ -0.33
RPAIN-206ENST00000539417 ARF6P62330 175 aa12.99□□□□□ -0.33
RPAIN-206ENST00000539417 PPP3R1P63098 170 aa12.99□□□□□ -0.33
RPAIN-206ENST00000539417 CD276Q5ZPR3 534 aa12.99□□□□□ -0.33
RPAIN-206ENST00000539417 BTNL3Q6UXE8 466 aa12.99□□□□□ -0.33
RPAIN-206ENST00000539417 LYPD6Q86Y78 171 aa12.99□□□□□ -0.33
RPAIN-206ENST00000539417 PHC2Q8IXK0 858 aa12.99□□□□□ -0.33
RPAIN-206ENST00000539417 TNFAIP8L1Q8WVP5 186 aa12.99□□□□□ -0.33
RPAIN-206ENST00000539417 GPER1Q99527 375 aa12.99□□□□□ -0.33
RPAIN-206ENST00000539417 MRI1Q9BV20 369 aa12.99□□□□□ -0.33
RPAIN-206ENST00000539417 ISYNA1Q9NPH2 558 aa12.99□□□□□ -0.33
RPAIN-206ENST00000539417 C19orf12Q9NSK7 152 aa12.99□□□□□ -0.33
RPAIN-206ENST00000539417 ZNF581Q9P0T4 197 aa12.99□□□□□ -0.33
RPAIN-206ENST00000539417 LRRC42Q9Y546 428 aa12.99□□□□□ -0.33
RPAIN-206ENST00000539417 MEX3AA1L020 520 aaKnown RBP12.98□□□□□ -0.33
RPAIN-206ENST00000539417 PSPNO60542 156 aa12.98□□□□□ -0.33
RPAIN-206ENST00000539417 HAND1O96004 215 aa12.98□□□□□ -0.33
RPAIN-206ENST00000539417 ZNF93P35789 620 aaPredicted RBP12.98□□□□□ -0.33
RPAIN-206ENST00000539417 CAV3P56539 151 aa12.98□□□□□ -0.33
RPAIN-206ENST00000539417 GPR50Q13585 617 aa12.98□□□□□ -0.33
RPAIN-206ENST00000539417 METAP1DQ6UB28 335 aaPredicted RBP12.98□□□□□ -0.33
RPAIN-206ENST00000539417 C17orf107Q6ZR85 190 aa12.98□□□□□ -0.33
RPAIN-206ENST00000539417 ZNF367Q7RTV3 350 aa12.98□□□□□ -0.33
RPAIN-206ENST00000539417 CEACAM19Q7Z692 300 aa12.98□□□□□ -0.33
RPAIN-206ENST00000539417 SAXO1Q8IYX7 474 aa12.98□□□□□ -0.33
RPAIN-206ENST00000539417 MS4A15Q8N5U1 240 aa12.98□□□□□ -0.33
RPAIN-206ENST00000539417 ZSCAN4Q8NAM6 433 aaPredicted RBP12.98□□□□□ -0.33
RPAIN-206ENST00000539417 OR4M1Q8NGD0 313 aa12.98□□□□□ -0.33
RPAIN-206ENST00000539417 C22orf15Q8WYQ4 148 aa12.98□□□□□ -0.33
RPAIN-206ENST00000539417 TBX15Q96SF7 602 aa12.98□□□□□ -0.33
RPAIN-206ENST00000539417 FAM192AQ9GZU8 254 aa12.98□□□□□ -0.33
RPAIN-206ENST00000539417 SIRPDQ9H106 197 aa12.98□□□□□ -0.33
RPAIN-206ENST00000539417 FOXJ3Q9UPW0 622 aa12.98□□□□□ -0.33
RPAIN-206ENST00000539417 GSTK1Q9Y2Q3 226 aa12.98□□□□□ -0.33
RPAIN-206ENST00000539417 A0A1W2PP11 408 aa12.97□□□□□ -0.33
RPAIN-206ENST00000539417 MAGEB3O15480 346 aa12.97□□□□□ -0.33
RPAIN-206ENST00000539417 RGS9O75916 674 aaPredicted RBP12.97□□□□□ -0.33
RPAIN-206ENST00000539417 CYB5AP00167 134 aa12.97□□□□□ -0.33
RPAIN-206ENST00000539417 TK1P04183 234 aa12.97□□□□□ -0.33
RPAIN-206ENST00000539417 PPIAL4GP0DN37 164 aa12.97□□□□□ -0.33
RPAIN-206ENST00000539417 PTGFRP43088 359 aa12.97□□□□□ -0.33
RPAIN-206ENST00000539417 CAPZA1P52907 286 aa12.97□□□□□ -0.33
RPAIN-206ENST00000539417 FABP5Q01469 135 aa12.97□□□□□ -0.33
RPAIN-206ENST00000539417 ZNF146Q15072 292 aa12.97□□□□□ -0.33
RPAIN-206ENST00000539417 ARMCX4Q5H9R4 360 aa12.97□□□□□ -0.33
RPAIN-206ENST00000539417 Q6P435 159 aa12.97□□□□□ -0.33
RPAIN-206ENST00000539417 ASCL4Q6XD76 172 aa12.97□□□□□ -0.33
RPAIN-206ENST00000539417 LRRTM1Q86UE6 522 aa12.97□□□□□ -0.33
RPAIN-206ENST00000539417 Q8IYB0 196 aa12.97□□□□□ -0.33
RPAIN-206ENST00000539417 BCL6BQ8N143 479 aaPredicted RBP12.97□□□□□ -0.33
RPAIN-206ENST00000539417 ZNF561Q8N587 486 aa12.97□□□□□ -0.33
RPAIN-206ENST00000539417 Q8N7P7 452 aa12.97□□□□□ -0.33
RPAIN-206ENST00000539417 C8orf46Q8TAG6 207 aa12.97□□□□□ -0.33
RPAIN-206ENST00000539417 UPRTQ96BW1 309 aa12.97□□□□□ -0.33
RPAIN-206ENST00000539417 CYYR1Q96J86 154 aa12.97□□□□□ -0.33
RPAIN-206ENST00000539417 PCGF1Q9BSM1 259 aa12.97□□□□□ -0.33
RPAIN-206ENST00000539417 YTHDF1Q9BYJ9 559 aaKnown RBP12.97□□□□□ -0.33
RPAIN-206ENST00000539417 CHST6Q9GZX3 395 aa12.97□□□□□ -0.33
RPAIN-206ENST00000539417 CNTD2Q9H8S5 307 aa12.97□□□□□ -0.33
RPAIN-206ENST00000539417 ING4Q9UNL4 249 aa12.97□□□□□ -0.33
RPAIN-206ENST00000539417 K7N7A8 449 aa12.97□□□□□ -0.33
RPAIN-206ENST00000539417 SIRPB1O00241 398 aa12.97□□□□□ -0.33
RPAIN-206ENST00000539417 ECDO95905 644 aaPredicted RBP12.97□□□□□ -0.33
RPAIN-206ENST00000539417 ERVFRD-1P60508 538 aa12.97□□□□□ -0.33
RPAIN-206ENST00000539417 ZNF773Q6PK81 442 aa12.97□□□□□ -0.33
RPAIN-206ENST00000539417 ASCC1Q8N9N2 400 aaKnown RBP12.97□□□□□ -0.33
RPAIN-206ENST00000539417 PXT1Q8NFP0 134 aa12.97□□□□□ -0.33
RPAIN-206ENST00000539417 OR4S1Q8NGB4 309 aa12.97□□□□□ -0.33
RPAIN-206ENST00000539417 OR4D6Q8NGJ1 314 aa12.97□□□□□ -0.33
RPAIN-206ENST00000539417 NANPQ8TBE9 248 aa12.97□□□□□ -0.33
RPAIN-206ENST00000539417 MUL1Q969V5 352 aa12.97□□□□□ -0.33
RPAIN-206ENST00000539417 WDFY2Q96P53 400 aa12.97□□□□□ -0.33
RPAIN-206ENST00000539417 NR1H4Q96RI1 486 aaPredicted RBP12.97□□□□□ -0.33
RPAIN-206ENST00000539417 GFI1Q99684 422 aa12.97□□□□□ -0.33
RPAIN-206ENST00000539417 ZNF69Q9UC07 566 aa12.97□□□□□ -0.33
RPAIN-206ENST00000539417 TRAV40A0A0B4J280 105 aa12.96□□□□□ -0.34
RPAIN-206ENST00000539417 OR2H2O95918 312 aa12.96□□□□□ -0.34
RPAIN-206ENST00000539417 CHRM2P08172 466 aa12.96□□□□□ -0.34
RPAIN-206ENST00000539417 UCHL1P09936 223 aa12.96□□□□□ -0.34
RPAIN-206ENST00000539417 EPHA1P21709 976 aa12.96□□□□□ -0.34
RPAIN-206ENST00000539417 SCN1BQ07699 218 aa12.96□□□□□ -0.34
RPAIN-206ENST00000539417 PIGYQ3MUY2 71 aa12.96□□□□□ -0.34
RPAIN-206ENST00000539417 UBE2UQ5VVX9 321 aa12.96□□□□□ -0.34
RPAIN-206ENST00000539417 RUSC1-AS1Q66K80 236 aa12.96□□□□□ -0.34
RPAIN-206ENST00000539417 TPRX1Q8N7U7 411 aa12.96□□□□□ -0.34
RPAIN-206ENST00000539417 PNLDC1Q8NA58 520 aaKnown RBP12.96□□□□□ -0.34
RPAIN-206ENST00000539417 C1orf147Q96MC9 270 aaPredicted RBP12.96□□□□□ -0.34
RPAIN-206ENST00000539417 ONECUT1Q9UBC0 465 aa12.96□□□□□ -0.34
RPAIN-206ENST00000539417 CKLFQ9UBR5 152 aa12.96□□□□□ -0.34
RPAIN-206ENST00000539417 GPR37O15354 613 aa12.95□□□□□ -0.34
RPAIN-206ENST00000539417 MRPS14O60783 128 aaKnown RBP12.95□□□□□ -0.34
RPAIN-206ENST00000539417 TOX4O94842 621 aa12.95□□□□□ -0.34
RPAIN-206ENST00000539417 HTR3BO95264 441 aa12.95□□□□□ -0.34
RPAIN-206ENST00000539417 OR3A1P47881 315 aa12.95□□□□□ -0.34
RPAIN-206ENST00000539417 ZNF273Q14593 569 aa12.95□□□□□ -0.34
RPAIN-206ENST00000539417 TMEM200BQ69YZ2 307 aa12.95□□□□□ -0.34
RPAIN-206ENST00000539417 ELP2Q6IA86 826 aa12.95□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms