RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 TRAPPC6AO75865 159 aa9.59□□□□□ -0.87
CLSTN3-207ENST00000537408 GLB1P16278 677 aa9.59□□□□□ -0.87
CLSTN3-207ENST00000537408 PTGER1P34995 402 aa9.59□□□□□ -0.87
CLSTN3-207ENST00000537408 GALR1P47211 349 aa9.59□□□□□ -0.87
CLSTN3-207ENST00000537408 ZNF92Q03936 586 aa9.59□□□□□ -0.87
CLSTN3-207ENST00000537408 GNMTQ14749 295 aa9.59□□□□□ -0.87
CLSTN3-207ENST00000537408 KCNIP4Q6PIL6 250 aa9.59□□□□□ -0.87
CLSTN3-207ENST00000537408 METTL27Q8N6F8 245 aaPredicted RBP9.59□□□□□ -0.87
CLSTN3-207ENST00000537408 OR5L1Q8NGL2 311 aa9.59□□□□□ -0.87
CLSTN3-207ENST00000537408 PTPMT1Q8WUK0 201 aaPredicted RBP9.59□□□□□ -0.87
CLSTN3-207ENST00000537408 UQCR10Q9UDW1 63 aa9.59□□□□□ -0.87
CLSTN3-207ENST00000537408 ENTPD2Q9Y5L3 495 aa9.59□□□□□ -0.87
CLSTN3-207ENST00000537408 DOCK4Q8N1I0 1966 aa9.58□□□□□ -0.88
CLSTN3-207ENST00000537408 CD160O95971 181 aa9.58□□□□□ -0.88
CLSTN3-207ENST00000537408 UCP3P55916 312 aa9.58□□□□□ -0.88
CLSTN3-207ENST00000537408 SUMO1P63165 101 aaKnown RBP9.58□□□□□ -0.88
CLSTN3-207ENST00000537408 ID2Q02363 134 aa9.58□□□□□ -0.88
CLSTN3-207ENST00000537408 METRNLQ641Q3 311 aa9.58□□□□□ -0.88
CLSTN3-207ENST00000537408 DPY19L2P2Q6ZN68 376 aa9.58□□□□□ -0.88
CLSTN3-207ENST00000537408 ADAMTS18Q8TE60 1221 aa9.58□□□□□ -0.88
CLSTN3-207ENST00000537408 OR1E3Q8WZA6 343 aa9.58□□□□□ -0.88
CLSTN3-207ENST00000537408 CGGBP1Q9UFW8 167 aaPredicted RBP9.58□□□□□ -0.88
CLSTN3-207ENST00000537408 COL4A4P53420 1690 aaPredicted RBP9.58□□□□□ -0.88
CLSTN3-207ENST00000537408 UPK3AO75631 287 aa9.58□□□□□ -0.88
CLSTN3-207ENST00000537408 IFNA1P01562 189 aa9.58□□□□□ -0.88
CLSTN3-207ENST00000537408 PI3P19957 117 aa9.58□□□□□ -0.88
CLSTN3-207ENST00000537408 AMY2BP19961 511 aa9.58□□□□□ -0.88
CLSTN3-207ENST00000537408 APOBEC1P41238 236 aaKnown RBP9.58□□□□□ -0.88
CLSTN3-207ENST00000537408 DUSP8Q13202 625 aa9.58□□□□□ -0.88
CLSTN3-207ENST00000537408 ADIRFQ15847 76 aa9.58□□□□□ -0.88
CLSTN3-207ENST00000537408 OCIAD2Q56VL3 154 aa9.58□□□□□ -0.88
CLSTN3-207ENST00000537408 WDFY1Q8IWB7 410 aa9.58□□□□□ -0.88
CLSTN3-207ENST00000537408 CSNK1A1LQ8N752 337 aa9.58□□□□□ -0.88
CLSTN3-207ENST00000537408 DNAJA3Q96EY1 480 aa9.58□□□□□ -0.88
CLSTN3-207ENST00000537408 C5orf66Q9H5L9 145 aa9.58□□□□□ -0.88
CLSTN3-207ENST00000537408 TMPRSS11DO60235 418 aa9.58□□□□□ -0.88
CLSTN3-207ENST00000537408 SMPD2O60906 423 aa9.58□□□□□ -0.88
CLSTN3-207ENST00000537408 TOX4O94842 621 aa9.58□□□□□ -0.88
CLSTN3-207ENST00000537408 KNG1P01042 644 aa9.58□□□□□ -0.88
CLSTN3-207ENST00000537408 NID1P14543 1247 aa9.58□□□□□ -0.88
CLSTN3-207ENST00000537408 DRD3P35462 400 aa9.58□□□□□ -0.88
CLSTN3-207ENST00000537408 ARF6P62330 175 aa9.58□□□□□ -0.88
CLSTN3-207ENST00000537408 PAFAH1B2P68402 229 aa9.58□□□□□ -0.88
CLSTN3-207ENST00000537408 LDLRAD2Q5SZI1 272 aa9.58□□□□□ -0.88
CLSTN3-207ENST00000537408 VWA1Q6PCB0 445 aa9.58□□□□□ -0.88
CLSTN3-207ENST00000537408 FIGLAQ6QHK4 219 aa9.58□□□□□ -0.88
CLSTN3-207ENST00000537408 Q6ZN92 141 aa9.58□□□□□ -0.88
CLSTN3-207ENST00000537408 ZNF709Q8N972 641 aa9.58□□□□□ -0.88
CLSTN3-207ENST00000537408 NECAP1Q8NC96 275 aa9.58□□□□□ -0.88
CLSTN3-207ENST00000537408 OR10AC1Q8NH08 325 aa9.58□□□□□ -0.88
CLSTN3-207ENST00000537408 EMG1Q92979 244 aaKnown RBP9.58□□□□□ -0.88
CLSTN3-207ENST00000537408 ELL3Q9HB65 397 aaPredicted RBP9.58□□□□□ -0.88
CLSTN3-207ENST00000537408 FGF22Q9HCT0 170 aa9.58□□□□□ -0.88
CLSTN3-207ENST00000537408 FSCN3Q9NQT6 498 aa9.58□□□□□ -0.88
CLSTN3-207ENST00000537408 B3GALT5Q9Y2C3 310 aa9.58□□□□□ -0.88
CLSTN3-207ENST00000537408 TMEM202A6NGA9 273 aa9.57□□□□□ -0.88
CLSTN3-207ENST00000537408 TNFSF4P23510 183 aa9.57□□□□□ -0.88
CLSTN3-207ENST00000537408 WNT5AP41221 380 aa9.57□□□□□ -0.88
CLSTN3-207ENST00000537408 ERVS71-1P61550 626 aa9.57□□□□□ -0.88
CLSTN3-207ENST00000537408 ZNF260Q3ZCT1 412 aa9.57□□□□□ -0.88
CLSTN3-207ENST00000537408 Q5PR19 223 aa9.57□□□□□ -0.88
CLSTN3-207ENST00000537408 TMEM225Q6GV28 225 aa9.57□□□□□ -0.88
CLSTN3-207ENST00000537408 CMTM2Q8TAZ6 248 aa9.57□□□□□ -0.88
CLSTN3-207ENST00000537408 APH1AQ96BI3 265 aa9.57□□□□□ -0.88
CLSTN3-207ENST00000537408 COX11Q9Y6N1 276 aa9.57□□□□□ -0.88
CLSTN3-207ENST00000537408 TRAV30A0A087WSZ9 112 aa9.57□□□□□ -0.88
CLSTN3-207ENST00000537408 TNFSF15O95150 251 aa9.57□□□□□ -0.88
CLSTN3-207ENST00000537408 TOMM40O96008 361 aa9.57□□□□□ -0.88
CLSTN3-207ENST00000537408 TCN2P20062 427 aa9.57□□□□□ -0.88
CLSTN3-207ENST00000537408 ACAA2P42765 397 aaKnown RBP9.57□□□□□ -0.88
CLSTN3-207ENST00000537408 SLC17A1Q14916 467 aa9.57□□□□□ -0.88
CLSTN3-207ENST00000537408 MMDQ15546 238 aa9.57□□□□□ -0.88
CLSTN3-207ENST00000537408 ZNF550Q7Z398 422 aa9.57□□□□□ -0.88
CLSTN3-207ENST00000537408 TMEM156Q8N614 296 aa9.57□□□□□ -0.88
CLSTN3-207ENST00000537408 LAMTOR2Q9Y2Q5 125 aa9.57□□□□□ -0.88
CLSTN3-207ENST00000537408 MRPS2Q9Y399 296 aaKnown RBP9.57□□□□□ -0.88
CLSTN3-207ENST00000537408 ABCA7Q8IZY2 2146 aa9.57□□□□□ -0.88
CLSTN3-207ENST00000537408 ACACAQ13085 2346 aa9.57□□□□□ -0.88
CLSTN3-207ENST00000537408 NSG1A0A0A6YYJ2 146 aa9.57□□□□□ -0.88
CLSTN3-207ENST00000537408 M0QZ24 198 aa9.57□□□□□ -0.88
CLSTN3-207ENST00000537408 KLK10O43240 276 aa9.57□□□□□ -0.88
CLSTN3-207ENST00000537408 MSR1P21757 451 aa9.57□□□□□ -0.88
CLSTN3-207ENST00000537408 FGF8P55075 233 aaPredicted RBP9.57□□□□□ -0.88
CLSTN3-207ENST00000537408 CEBPEQ15744 281 aa9.57□□□□□ -0.88
CLSTN3-207ENST00000537408 KMT5CQ86Y97 462 aa9.57□□□□□ -0.88
CLSTN3-207ENST00000537408 CISD2Q8N5K1 135 aaKnown RBP9.57□□□□□ -0.88
CLSTN3-207ENST00000537408 KLHDC1Q8N7A1 406 aa9.57□□□□□ -0.88
CLSTN3-207ENST00000537408 MRGPRFQ96AM1 343 aa9.57□□□□□ -0.88
CLSTN3-207ENST00000537408 GNPNAT1Q96EK6 184 aaPredicted RBP9.57□□□□□ -0.88
CLSTN3-207ENST00000537408 SLC25A44Q96H78 314 aaPredicted RBP9.57□□□□□ -0.88
CLSTN3-207ENST00000537408 IMMP2LQ96T52 175 aa9.57□□□□□ -0.88
CLSTN3-207ENST00000537408 PELI2Q9HAT8 420 aa9.57□□□□□ -0.88
CLSTN3-207ENST00000537408 HIF3AQ9Y2N7 669 aa9.57□□□□□ -0.88
CLSTN3-207ENST00000537408 WIPI2Q9Y4P8 454 aa9.57□□□□□ -0.88
CLSTN3-207ENST00000537408 YLPM1P49750 1951 aaKnown RBP9.57□□□□□ -0.88
CLSTN3-207ENST00000537408 SYNGR4O95473 234 aa9.56□□□□□ -0.88
CLSTN3-207ENST00000537408 PSMB5P28074 263 aa9.56□□□□□ -0.88
CLSTN3-207ENST00000537408 ZNF136P52737 540 aa9.56□□□□□ -0.88
CLSTN3-207ENST00000537408 RPS15AP62244 130 aaKnown RBP9.56□□□□□ -0.88
CLSTN3-207ENST00000537408 DPTQ07507 201 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms