RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 KCNE3Q9Y6H6 103 aa9.48□□□□□ -0.89
CLIP1-209ENST00000537178 TRAV20A0A0B4J274 112 aa9.48□□□□□ -0.89
CLIP1-209ENST00000537178 A0A0B4J2E0 115 aa9.48□□□□□ -0.89
CLIP1-209ENST00000537178 C3orf85A0A1B0GTC6 90 aa9.48□□□□□ -0.89
CLIP1-209ENST00000537178 A0A1B0GX12 115 aa9.48□□□□□ -0.89
CLIP1-209ENST00000537178 RGS13O14921 159 aa9.48□□□□□ -0.89
CLIP1-209ENST00000537178 NKX2-2O95096 273 aa9.48□□□□□ -0.89
CLIP1-209ENST00000537178 CAMPP49913 170 aa9.48□□□□□ -0.89
CLIP1-209ENST00000537178 ELOBQ15370 118 aa9.48□□□□□ -0.89
CLIP1-209ENST00000537178 LBHQ53QV2 105 aaPredicted RBP9.48□□□□□ -0.89
CLIP1-209ENST00000537178 MRM1Q6IN84 353 aaKnown RBP9.48□□□□□ -0.89
CLIP1-209ENST00000537178 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.48□□□□□ -0.89
CLIP1-209ENST00000537178 SCGB1D4Q6XE38 83 aa9.48□□□□□ -0.89
CLIP1-209ENST00000537178 MRGPREQ86SM8 312 aa9.48□□□□□ -0.89
CLIP1-209ENST00000537178 FAM24BQ8N5W8 94 aa9.48□□□□□ -0.89
CLIP1-209ENST00000537178 OR10G4Q8NGN3 311 aa9.48□□□□□ -0.89
CLIP1-209ENST00000537178 OR10G9Q8NGN4 311 aa9.48□□□□□ -0.89
CLIP1-209ENST00000537178 OR10G7Q8NGN6 311 aa9.48□□□□□ -0.89
CLIP1-209ENST00000537178 OR6S1Q8NH40 331 aa9.48□□□□□ -0.89
CLIP1-209ENST00000537178 UBALD1Q8TB05 177 aa9.48□□□□□ -0.89
CLIP1-209ENST00000537178 CLEC5AQ9NY25 188 aa9.48□□□□□ -0.89
CLIP1-209ENST00000537178 NAGKQ9UJ70 344 aa9.48□□□□□ -0.89
CLIP1-209ENST00000537178 IGLV3-25P01717 112 aa9.48□□□□□ -0.89
CLIP1-209ENST00000537178 CD40P25942 277 aa9.48□□□□□ -0.89
CLIP1-209ENST00000537178 SNRPEP62304 92 aaKnown RBP9.48□□□□□ -0.89
CLIP1-209ENST00000537178 HLA-DRB3P79483 266 aa9.48□□□□□ -0.89
CLIP1-209ENST00000537178 PPP1R1AQ13522 171 aa9.48□□□□□ -0.89
CLIP1-209ENST00000537178 RAB32Q13637 225 aa9.48□□□□□ -0.89
CLIP1-209ENST00000537178 PRSS54Q6PEW0 395 aa9.48□□□□□ -0.89
CLIP1-209ENST00000537178 SPNS3Q6ZMD2 512 aa9.48□□□□□ -0.89
CLIP1-209ENST00000537178 RTN4RL1Q86UN2 441 aaPredicted RBP9.48□□□□□ -0.89
CLIP1-209ENST00000537178 NARFLQ9H6Q4 476 aa9.48□□□□□ -0.89
CLIP1-209ENST00000537178 Q9N2K0 584 aa9.48□□□□□ -0.89
CLIP1-209ENST00000537178 SPTY2D1-AS1A0A0U1RR47 76 aa9.48□□□□□ -0.89
CLIP1-209ENST00000537178 SOX15O60248 233 aa9.48□□□□□ -0.89
CLIP1-209ENST00000537178 MYOGP15173 224 aa9.48□□□□□ -0.89
CLIP1-209ENST00000537178 HLA-GP17693 338 aa9.48□□□□□ -0.89
CLIP1-209ENST00000537178 HIST3H3Q16695 136 aa9.48□□□□□ -0.89
CLIP1-209ENST00000537178 C5orf17Q8NAS9 161 aa9.48□□□□□ -0.89
CLIP1-209ENST00000537178 OR6C3Q9NZP0 311 aa9.48□□□□□ -0.89
CLIP1-209ENST00000537178 OR5B21A6NL26 309 aa9.47□□□□□ -0.89
CLIP1-209ENST00000537178 METTL12A8MUP2 240 aa9.47□□□□□ -0.89
CLIP1-209ENST00000537178 MBTPS2O43462 519 aa9.47□□□□□ -0.89
CLIP1-209ENST00000537178 PLPP2O43688 288 aa9.47□□□□□ -0.89
CLIP1-209ENST00000537178 BCL3P20749 454 aa9.47□□□□□ -0.89
CLIP1-209ENST00000537178 RPS4Y1P22090 263 aaKnown RBP9.47□□□□□ -0.89
CLIP1-209ENST00000537178 TIAL1Q01085 375 aaKnown RBP eCLIP9.47□□□□□ -0.89
CLIP1-209ENST00000537178 IL24Q13007 206 aa9.47□□□□□ -0.89
CLIP1-209ENST00000537178 TRA2AQ13595 282 aaKnown RBP eCLIP9.47□□□□□ -0.893e-12■■■■□ 21.3
CLIP1-209ENST00000537178 CXorf67Q86X51 503 aaPredicted RBP9.47□□□□□ -0.89
CLIP1-209ENST00000537178 SFTPA2Q8IWL1 248 aa9.47□□□□□ -0.89
CLIP1-209ENST00000537178 SFTPA1Q8IWL2 248 aa9.47□□□□□ -0.89
CLIP1-209ENST00000537178 SLC52A3Q9NQ40 469 aa9.47□□□□□ -0.89
CLIP1-209ENST00000537178 AP5S1Q9NUS5 200 aa9.47□□□□□ -0.89
CLIP1-209ENST00000537178 PPIHO43447 177 aaKnown RBP9.47□□□□□ -0.89
CLIP1-209ENST00000537178 MPC2O95563 127 aa9.47□□□□□ -0.89
CLIP1-209ENST00000537178 UBE2L3P68036 154 aaKnown RBP9.47□□□□□ -0.89
CLIP1-209ENST00000537178 CTF1Q16619 201 aa9.47□□□□□ -0.89
CLIP1-209ENST00000537178 ZNF766Q5HY98 468 aa9.47□□□□□ -0.89
CLIP1-209ENST00000537178 TMEM108Q6UXF1 575 aa9.47□□□□□ -0.89
CLIP1-209ENST00000537178 OR5M9Q8NGP3 310 aa9.47□□□□□ -0.89
CLIP1-209ENST00000537178 WDFY2Q96P53 400 aa9.47□□□□□ -0.89
CLIP1-209ENST00000537178 PTPRDP23468 1912 aa9.47□□□□□ -0.89
CLIP1-209ENST00000537178 SPTA1P02549 2419 aa9.47□□□□□ -0.89
CLIP1-209ENST00000537178 SERTM1A2A2V5 107 aa9.47□□□□□ -0.89
CLIP1-209ENST00000537178 H3BMH7 237 aa9.47□□□□□ -0.89
CLIP1-209ENST00000537178 CRXO43186 299 aaPredicted RBP9.47□□□□□ -0.89
CLIP1-209ENST00000537178 MELTFP08582 738 aa9.47□□□□□ -0.89
CLIP1-209ENST00000537178 CA6P23280 308 aa9.47□□□□□ -0.89
CLIP1-209ENST00000537178 ZNF83P51522 516 aa9.47□□□□□ -0.89
CLIP1-209ENST00000537178 BSXQ3C1V8 233 aa9.47□□□□□ -0.89
CLIP1-209ENST00000537178 TMEM240Q5SV17 173 aa9.47□□□□□ -0.89
CLIP1-209ENST00000537178 OR2T10Q8NGZ9 312 aa9.47□□□□□ -0.89
CLIP1-209ENST00000537178 SLC25A22Q9H936 323 aa9.47□□□□□ -0.89
CLIP1-209ENST00000537178 PPIL1Q9Y3C6 166 aa9.47□□□□□ -0.89
CLIP1-209ENST00000537178 ASCL1P50553 236 aa9.47□□□□□ -0.89
CLIP1-209ENST00000537178 YBX1P67809 324 aaKnown RBP9.47□□□□□ -0.89
CLIP1-209ENST00000537178 TMEM196Q5HYL7 178 aa9.47□□□□□ -0.89
CLIP1-209ENST00000537178 FAM78BQ5VT40 261 aa9.47□□□□□ -0.89
CLIP1-209ENST00000537178 DOLPP1Q86YN1 238 aa9.47□□□□□ -0.89
CLIP1-209ENST00000537178 C20orf196Q8IYI0 205 aa9.47□□□□□ -0.89
CLIP1-209ENST00000537178 OR4S2Q8NH73 311 aa9.47□□□□□ -0.89
CLIP1-209ENST00000537178 FGF14Q92915 247 aa9.47□□□□□ -0.89
CLIP1-209ENST00000537178 SRD5A3Q9H8P0 318 aa9.47□□□□□ -0.89
CLIP1-209ENST00000537178 ZNF253O75346 499 aa9.46□□□□□ -0.89
CLIP1-209ENST00000537178 ZFPL1O95159 310 aa9.46□□□□□ -0.89
CLIP1-209ENST00000537178 ACAA2P42765 397 aaKnown RBP9.46□□□□□ -0.89
CLIP1-209ENST00000537178 SULT1A1P50225 295 aa9.46□□□□□ -0.89
CLIP1-209ENST00000537178 MRPL58Q14197 206 aaKnown RBP9.46□□□□□ -0.89
CLIP1-209ENST00000537178 TCTN1Q2MV58 587 aa9.46□□□□□ -0.89
CLIP1-209ENST00000537178 PDPNQ86YL7 162 aa9.46□□□□□ -0.89
CLIP1-209ENST00000537178 TDHQ8IZJ6 230 aa9.46□□□□□ -0.89
CLIP1-209ENST00000537178 MUC20Q8N307 709 aaPredicted RBP9.46□□□□□ -0.89
CLIP1-209ENST00000537178 OR8D4Q8NGM9 314 aa9.46□□□□□ -0.89
CLIP1-209ENST00000537178 RAB1CQ92928 201 aa9.46□□□□□ -0.89
CLIP1-209ENST00000537178 IL22RA2Q969J5 263 aa9.46□□□□□ -0.89
CLIP1-209ENST00000537178 RHNO1Q9BSD3 238 aa9.46□□□□□ -0.89
CLIP1-209ENST00000537178 ZNF426Q9BUY5 554 aa9.46□□□□□ -0.89
CLIP1-209ENST00000537178 TECRQ9NZ01 308 aaKnown RBP9.46□□□□□ -0.89
CLIP1-209ENST00000537178 UFC1Q9Y3C8 167 aa9.46□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms