RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 GLIPR1P48060 266 aa5.74□□□□□ -1.49
USP28-202ENST00000535607 EMDP50402 254 aa5.74□□□□□ -1.49
USP28-202ENST00000535607 ZNF84P51523 738 aa5.74□□□□□ -1.49
USP28-202ENST00000535607 TMEM33P57088 247 aa5.74□□□□□ -1.49
USP28-202ENST00000535607 RAB38P57729 211 aa5.74□□□□□ -1.49
USP28-202ENST00000535607 RPL27P61353 136 aaKnown RBP5.74□□□□□ -1.49
USP28-202ENST00000535607 RPS23P62266 143 aaKnown RBP5.74□□□□□ -1.49
USP28-202ENST00000535607 SPOCK1Q08629 439 aa5.74□□□□□ -1.49
USP28-202ENST00000535607 FOXI1Q12951 378 aa5.74□□□□□ -1.49
USP28-202ENST00000535607 SGCGQ13326 291 aa5.74□□□□□ -1.49
USP28-202ENST00000535607 ERV3-1Q14264 604 aa5.74□□□□□ -1.49
USP28-202ENST00000535607 TAF9Q16594 264 aa5.74□□□□□ -1.49
USP28-202ENST00000535607 HAGHQ16775 308 aa5.74□□□□□ -1.49
USP28-202ENST00000535607 DEFB134Q4QY38 66 aa5.74□□□□□ -1.49
USP28-202ENST00000535607 C1orf189Q5VU69 101 aa5.74□□□□□ -1.49
USP28-202ENST00000535607 IGFL4Q6B9Z1 124 aa5.74□□□□□ -1.49
USP28-202ENST00000535607 OR2T2Q6IF00 324 aa5.74□□□□□ -1.49
USP28-202ENST00000535607 CCDC144NLQ6NUI1 221 aa5.74□□□□□ -1.49
USP28-202ENST00000535607 ZNF101Q8IZC7 436 aa5.74□□□□□ -1.49
USP28-202ENST00000535607 HIST3H2BBQ8N257 126 aa5.74□□□□□ -1.49
USP28-202ENST00000535607 LRRC75AQ8NAA5 344 aa5.74□□□□□ -1.49
USP28-202ENST00000535607 OR52R1Q8NGF1 315 aa5.74□□□□□ -1.49
USP28-202ENST00000535607 OR51A4Q8NGJ6 313 aa5.74□□□□□ -1.49
USP28-202ENST00000535607 OR10G4Q8NGN3 311 aa5.74□□□□□ -1.49
USP28-202ENST00000535607 MR1Q95460 341 aa5.74□□□□□ -1.49
USP28-202ENST00000535607 CTHRC1Q96CG8 243 aa5.74□□□□□ -1.49
USP28-202ENST00000535607 FBXO17Q96EF6 278 aa5.74□□□□□ -1.49
USP28-202ENST00000535607 PACRGQ96M98 296 aaPredicted RBP5.74□□□□□ -1.49
USP28-202ENST00000535607 IP6K3Q96PC2 410 aa5.74□□□□□ -1.49
USP28-202ENST00000535607 C20orf24Q9BUV8 137 aa5.74□□□□□ -1.49
USP28-202ENST00000535607 SUCNR1Q9BXA5 334 aa5.74□□□□□ -1.49
USP28-202ENST00000535607 TBL1XR1Q9BZK7 514 aa5.74□□□□□ -1.49
USP28-202ENST00000535607 SLC25A31Q9H0C2 315 aa5.74□□□□□ -1.49
USP28-202ENST00000535607 PRDM13Q9H4Q3 707 aa5.74□□□□□ -1.49
USP28-202ENST00000535607 MMP25Q9NPA2 562 aa5.74□□□□□ -1.49
USP28-202ENST00000535607 KIAA1456Q9P272 454 aa5.74□□□□□ -1.49
USP28-202ENST00000535607 B9D1Q9UPM9 204 aa5.74□□□□□ -1.49
USP28-202ENST00000535607 MRPS18BQ9Y676 258 aaKnown RBP5.74□□□□□ -1.49
USP28-202ENST00000535607 LRRK1Q38SD2 2015 aa5.74□□□□□ -1.49
USP28-202ENST00000535607 A0A0C4DFX4 3053 aa5.73□□□□□ -1.49
USP28-202ENST00000535607 HEATR5BQ9P2D3 2071 aa5.73□□□□□ -1.49
USP28-202ENST00000535607 NCOR1O75376 2440 aa5.73□□□□□ -1.49
USP28-202ENST00000535607 TMEM269A0A1B0GVZ9 245 aa5.73□□□□□ -1.49
USP28-202ENST00000535607 LOC107986453A0A1B0GWG9 222 aa5.73□□□□□ -1.49
USP28-202ENST00000535607 A0A1W2PPE2 198 aa5.73□□□□□ -1.49
USP28-202ENST00000535607 PRSS37A4D1T9 235 aa5.73□□□□□ -1.49
USP28-202ENST00000535607 MSGN1A6NI15 193 aa5.73□□□□□ -1.49
USP28-202ENST00000535607 ZNF724A8MTY0 619 aa5.73□□□□□ -1.49
USP28-202ENST00000535607 SERPINE3A8MV23 424 aa5.73□□□□□ -1.49
USP28-202ENST00000535607 A8MVM7 634 aa5.73□□□□□ -1.49
USP28-202ENST00000535607 C4orf51C9J302 202 aa5.73□□□□□ -1.49
USP28-202ENST00000535607 PPP5D1E7EU14 171 aa5.73□□□□□ -1.49
USP28-202ENST00000535607 PRAMEF26H0Y7S4 382 aa5.73□□□□□ -1.49
USP28-202ENST00000535607 H3BQ15 152 aa5.73□□□□□ -1.49
USP28-202ENST00000535607 CLDN34H7C241 214 aa5.73□□□□□ -1.49
USP28-202ENST00000535607 CYB5BO43169 146 aa5.73□□□□□ -1.49
USP28-202ENST00000535607 ST8SIA3O43173 380 aa5.73□□□□□ -1.49
USP28-202ENST00000535607 SPRY2O43597 315 aa5.73□□□□□ -1.49
USP28-202ENST00000535607 IFNA1P01562 189 aa5.73□□□□□ -1.49
USP28-202ENST00000535607 MBP02144 154 aa5.73□□□□□ -1.49
USP28-202ENST00000535607 STATHP02808 62 aa5.73□□□□□ -1.49
USP28-202ENST00000535607 CTSDP07339 412 aaPredicted RBP5.73□□□□□ -1.49
USP28-202ENST00000535607 RD3LP0DJH9 198 aa5.73□□□□□ -1.49
USP28-202ENST00000535607 OR5H8P0DN80 308 aa5.73□□□□□ -1.49
USP28-202ENST00000535607 TDGF1P13385 188 aa5.73□□□□□ -1.49
USP28-202ENST00000535607 FABP4P15090 132 aa5.73□□□□□ -1.49
USP28-202ENST00000535607 PAX1P15863 534 aa5.73□□□□□ -1.49
USP28-202ENST00000535607 HIST1H1DP16402 221 aaKnown RBP5.73□□□□□ -1.49
USP28-202ENST00000535607 DUSP1P28562 367 aa5.73□□□□□ -1.49
USP28-202ENST00000535607 SFTPDP35247 375 aa5.73□□□□□ -1.49
USP28-202ENST00000535607 ZNF93P35789 620 aaPredicted RBP5.73□□□□□ -1.49
USP28-202ENST00000535607 CSNK1A1P48729 337 aa5.73□□□□□ -1.49
USP28-202ENST00000535607 DHPSP49366 369 aaPredicted RBP5.73□□□□□ -1.49
USP28-202ENST00000535607 NPY4RP50391 375 aa5.73□□□□□ -1.49
USP28-202ENST00000535607 DAP3P51398 398 aaKnown RBP5.73□□□□□ -1.49
USP28-202ENST00000535607 NUTF2P61970 127 aaKnown RBP5.73□□□□□ -1.49
USP28-202ENST00000535607 YPEL5P62699 121 aa5.73□□□□□ -1.49
USP28-202ENST00000535607 CSNK2A1P68400 391 aaPredicted RBP5.73□□□□□ -1.49
USP28-202ENST00000535607 RPL18Q07020 188 aaKnown RBP5.73□□□□□ -1.49
USP28-202ENST00000535607 IL15RAQ13261 267 aa5.73□□□□□ -1.49
USP28-202ENST00000535607 RUNX2Q13950 521 aa5.73□□□□□ -1.49
USP28-202ENST00000535607 SLC10A1Q14973 349 aa5.73□□□□□ -1.49
USP28-202ENST00000535607 EXOSC7Q15024 291 aaKnown RBP5.73□□□□□ -1.49
USP28-202ENST00000535607 JOSD1Q15040 202 aaPredicted RBP5.73□□□□□ -1.49
USP28-202ENST00000535607 IQCJQ1A5X6 159 aa5.73□□□□□ -1.49
USP28-202ENST00000535607 ABCA11PQ4W5N1 156 aa5.73□□□□□ -1.49
USP28-202ENST00000535607 SLC16A14Q7RTX9 510 aa5.73□□□□□ -1.49
USP28-202ENST00000535607 ZNF429Q86V71 674 aa5.73□□□□□ -1.49
USP28-202ENST00000535607 WDR5BQ86VZ2 330 aa5.73□□□□□ -1.49
USP28-202ENST00000535607 OOSP2Q86WS3 158 aa5.73□□□□□ -1.49
USP28-202ENST00000535607 KRTAP1-3Q8IUG1 177 aa5.73□□□□□ -1.49
USP28-202ENST00000535607 OR4N5Q8IXE1 308 aa5.73□□□□□ -1.49
USP28-202ENST00000535607 TMEM183AQ8IXX5 376 aa5.73□□□□□ -1.49
USP28-202ENST00000535607 CCDC71LQ8N9Z2 235 aa5.73□□□□□ -1.49
USP28-202ENST00000535607 CCDC54Q8NEL0 328 aa5.73□□□□□ -1.49
USP28-202ENST00000535607 CSNK2A3Q8NEV1 391 aa5.73□□□□□ -1.49
USP28-202ENST00000535607 OR13C9Q8NGT0 318 aa5.73□□□□□ -1.49
USP28-202ENST00000535607 OR10AC1Q8NH08 325 aa5.73□□□□□ -1.49
USP28-202ENST00000535607 OR14L1PQ8NHC6 308 aa5.73□□□□□ -1.49
USP28-202ENST00000535607 FAM213BQ8TBF2 198 aa5.73□□□□□ -1.49
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms