RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 ACTBL2Q562R1 376 aa1.43□□□□□ -2.18
CD44-238ENST00000534296 TMEM69Q5SWH9 247 aa1.43□□□□□ -2.18
CD44-238ENST00000534296 HBMQ6B0K9 141 aa1.43□□□□□ -2.18
CD44-238ENST00000534296 TMEM144Q7Z5S9 345 aa1.43□□□□□ -2.18
CD44-238ENST00000534296 SETD3Q86TU7 594 aaPredicted RBP1.43□□□□□ -2.18
CD44-238ENST00000534296 ST13P4Q8IZP2 240 aaPredicted RBP1.43□□□□□ -2.18
CD44-238ENST00000534296 OR4K2Q8NGD2 314 aa1.43□□□□□ -2.18
CD44-238ENST00000534296 CLHC1Q8NHS4 586 aa1.43□□□□□ -2.18
CD44-238ENST00000534296 CCDC124Q96CT7 223 aaKnown RBP1.43□□□□□ -2.18
CD44-238ENST00000534296 TVP23CQ96ET8 276 aa1.43□□□□□ -2.18
CD44-238ENST00000534296 OR2V2Q96R30 315 aa1.43□□□□□ -2.18
CD44-238ENST00000534296 C20orf144Q9BQM9 153 aa1.43□□□□□ -2.18
CD44-238ENST00000534296 TM2D3Q9BRN9 247 aa1.43□□□□□ -2.18
CD44-238ENST00000534296 CHID1Q9BWS9 393 aa1.43□□□□□ -2.18
CD44-238ENST00000534296 MAP1LC3CQ9BXW4 147 aa1.43□□□□□ -2.18
CD44-238ENST00000534296 MS4A8Q9BY19 250 aa1.43□□□□□ -2.18
CD44-238ENST00000534296 SHCBP1LQ9BZQ2 653 aa1.43□□□□□ -2.18
CD44-238ENST00000534296 SLC25A31Q9H0C2 315 aa1.43□□□□□ -2.18
CD44-238ENST00000534296 PRORYQ9H606 182 aa1.43□□□□□ -2.18
CD44-238ENST00000534296 XKR8Q9H6D3 395 aa1.43□□□□□ -2.18
CD44-238ENST00000534296 PLEKHF2Q9H8W4 249 aa1.43□□□□□ -2.18
CD44-238ENST00000534296 RDH14Q9HBH5 336 aa1.43□□□□□ -2.18
CD44-238ENST00000534296 ACOT13Q9NPJ3 140 aa1.43□□□□□ -2.18
CD44-238ENST00000534296 ZNF302Q9NR11 478 aa1.43□□□□□ -2.18
CD44-238ENST00000534296 KIF26AQ9ULI4 1882 aaPredicted RBP1.43□□□□□ -2.18
CD44-238ENST00000534296 BRWD3Q6RI45 1802 aa1.43□□□□□ -2.18
CD44-238ENST00000534296 PLXNB3Q9ULL4 1909 aa1.42□□□□□ -2.18
CD44-238ENST00000534296 USP24Q9UPU5 2620 aa1.42□□□□□ -2.18
CD44-238ENST00000534296 NUP205Q92621 2012 aa1.42□□□□□ -2.18
CD44-238ENST00000534296 KIR2DS1A0A191URI9 304 aa1.42□□□□□ -2.18
CD44-238ENST00000534296 A0A1W2PRG6 482 aa1.42□□□□□ -2.18
CD44-238ENST00000534296 MGAT4DA6NG13 374 aa1.42□□□□□ -2.18
CD44-238ENST00000534296 ZNF233A6NK53 670 aa1.42□□□□□ -2.18
CD44-238ENST00000534296 OR2AT4A6NND4 320 aa1.42□□□□□ -2.18
CD44-238ENST00000534296 POP7O75817 140 aaKnown RBP1.42□□□□□ -2.18
CD44-238ENST00000534296 IGKV1-39P01597 117 aa1.42□□□□□ -2.18
CD44-238ENST00000534296 IGKV1D-16P01601 117 aa1.42□□□□□ -2.18
CD44-238ENST00000534296 IGKV1D-39P04432 117 aa1.42□□□□□ -2.18
CD44-238ENST00000534296 TTPAP49638 278 aa1.42□□□□□ -2.18
CD44-238ENST00000534296 KLF3P57682 345 aaPredicted RBP1.42□□□□□ -2.18
CD44-238ENST00000534296 ELF3P78545 371 aaPredicted RBP1.42□□□□□ -2.18
CD44-238ENST00000534296 DYNC1I2Q13409 638 aaKnown RBP1.42□□□□□ -2.18
CD44-238ENST00000534296 GPR176Q14439 515 aa1.42□□□□□ -2.18
CD44-238ENST00000534296 TRIP13Q15645 432 aaPredicted RBP1.42□□□□□ -2.18
CD44-238ENST00000534296 ZNF141Q15928 474 aa1.42□□□□□ -2.18
CD44-238ENST00000534296 IGFBP7Q16270 282 aa1.42□□□□□ -2.18
CD44-238ENST00000534296 TAF9Q16594 264 aa1.42□□□□□ -2.18
CD44-238ENST00000534296 GOLGA7BQ2TAP0 167 aa1.42□□□□□ -2.18
CD44-238ENST00000534296 SPIN3Q5JUX0 258 aa1.42□□□□□ -2.18
CD44-238ENST00000534296 NXNL2Q5VZ03 156 aa1.42□□□□□ -2.18
CD44-238ENST00000534296 ZNF660Q6AZW8 331 aaPredicted RBP1.42□□□□□ -2.18
CD44-238ENST00000534296 EPGNQ6UW88 154 aa1.42□□□□□ -2.18
CD44-238ENST00000534296 TMEM136Q6ZRR5 245 aa1.42□□□□□ -2.18
CD44-238ENST00000534296 RBM45Q8IUH3 476 aaKnown RBP1.42□□□□□ -2.18
CD44-238ENST00000534296 ZNF738Q8NE65 137 aa1.42□□□□□ -2.18
CD44-238ENST00000534296 BPIFB6Q8NFQ5 453 aa1.42□□□□□ -2.18
CD44-238ENST00000534296 OR8K3Q8NH51 312 aa1.42□□□□□ -2.18
CD44-238ENST00000534296 ACTL9Q8TC94 416 aa1.42□□□□□ -2.18
CD44-238ENST00000534296 LGALS14Q8TCE9 139 aa1.42□□□□□ -2.18
CD44-238ENST00000534296 BLNKQ8WV28 456 aa1.42□□□□□ -2.18
CD44-238ENST00000534296 ITLN2Q8WWU7 325 aaPredicted RBP1.42□□□□□ -2.18
CD44-238ENST00000534296 CATSPER2Q96P56 530 aa1.42□□□□□ -2.18
CD44-238ENST00000534296 PITX2Q99697 317 aa1.42□□□□□ -2.18
CD44-238ENST00000534296 ANGPTL4Q9BY76 406 aa1.42□□□□□ -2.18
CD44-238ENST00000534296 ULBP1Q9BZM6 244 aa1.42□□□□□ -2.18
CD44-238ENST00000534296 NXF2Q9GZY0 626 aaKnown RBP1.42□□□□□ -2.18
CD44-238ENST00000534296 PORCNQ9H237 461 aa1.42□□□□□ -2.18
CD44-238ENST00000534296 LHX5Q9H2C1 402 aa1.42□□□□□ -2.18
CD44-238ENST00000534296 DHX35Q9H5Z1 703 aaKnown RBP1.42□□□□□ -2.18
CD44-238ENST00000534296 TRIM45Q9H8W5 580 aaPredicted RBP1.42□□□□□ -2.18
CD44-238ENST00000534296 LINC00574Q9H8X3 128 aa1.42□□□□□ -2.18
CD44-238ENST00000534296 TMBIM4Q9HC24 238 aa1.42□□□□□ -2.18
CD44-238ENST00000534296 ZNF230Q9UIE0 474 aaPredicted RBP1.42□□□□□ -2.18
CD44-238ENST00000534296 ZNF391Q9UJN7 358 aa1.42□□□□□ -2.18
CD44-238ENST00000534296 TMEM94Q12767 1356 aa1.42□□□□□ -2.18
CD44-238ENST00000534296 TRIOBPQ9H2D6 2365 aa1.42□□□□□ -2.18
CD44-238ENST00000534296 SRCAPQ6ZRS2 3230 aa1.42□□□□□ -2.18
CD44-238ENST00000534296 NRCAMQ92823 1304 aa1.41□□□□□ -2.18
CD44-238ENST00000534296 IGKV1-6A0A0C4DH72 117 aa1.41□□□□□ -2.18
CD44-238ENST00000534296 C16orf90A8MZG2 172 aa1.41□□□□□ -2.18
CD44-238ENST00000534296 IGLL5B9A064 214 aa1.41□□□□□ -2.18
CD44-238ENST00000534296 I3L4J1 428 aa1.41□□□□□ -2.18
CD44-238ENST00000534296 GUSBP08236 651 aa1.41□□□□□ -2.18
CD44-238ENST00000534296 SOD3P08294 240 aa1.41□□□□□ -2.18
CD44-238ENST00000534296 ZNF35P13682 527 aa1.41□□□□□ -2.18
CD44-238ENST00000534296 PYCR1P32322 319 aa1.41□□□□□ -2.18
CD44-238ENST00000534296 RAB38P57729 211 aa1.41□□□□□ -2.18
CD44-238ENST00000534296 UBE2KP61086 200 aa1.41□□□□□ -2.18
CD44-238ENST00000534296 XIAPP98170 497 aa1.41□□□□□ -2.18
CD44-238ENST00000534296 MEF2CQ06413 473 aaPredicted RBP1.41□□□□□ -2.18
CD44-238ENST00000534296 ENDOGQ14249 297 aaKnown RBP1.41□□□□□ -2.18
CD44-238ENST00000534296 ANGPT1Q15389 498 aa1.41□□□□□ -2.18
CD44-238ENST00000534296 TMEM241Q24JQ0 296 aa1.41□□□□□ -2.18
CD44-238ENST00000534296 ZNF404Q494X3 552 aa1.41□□□□□ -2.18
CD44-238ENST00000534296 CLEC12AQ5QGZ9 265 aa1.41□□□□□ -2.18
CD44-238ENST00000534296 LDLRAD2Q5SZI1 272 aa1.41□□□□□ -2.18
CD44-238ENST00000534296 FAHD1Q6P587 224 aa1.41□□□□□ -2.18
CD44-238ENST00000534296 BRD3OSQ6XYD6 125 aa1.41□□□□□ -2.18
CD44-238ENST00000534296 GALNT10Q86SR1 603 aa1.41□□□□□ -2.18
CD44-238ENST00000534296 AMN1Q8IY45 258 aa1.41□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms