RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 LHFPL6Q9Y693 200 aa12.39□□□□□ -0.43
USP48-213ENST00000529637 FRYLO94915 3013 aa12.39□□□□□ -0.43
USP48-213ENST00000529637 ZNF814B7Z6K7 855 aa12.39□□□□□ -0.43
USP48-213ENST00000529637 HSD17B6O14756 317 aa12.39□□□□□ -0.43
USP48-213ENST00000529637 SCGNO76038 276 aa12.39□□□□□ -0.43
USP48-213ENST00000529637 HPNP05981 417 aa12.39□□□□□ -0.43
USP48-213ENST00000529637 SUMO3P55854 103 aaPredicted RBP12.39□□□□□ -0.43
USP48-213ENST00000529637 UBE2KP61086 200 aa12.39□□□□□ -0.43
USP48-213ENST00000529637 NOXO1Q8NFA2 376 aa12.39□□□□□ -0.43
USP48-213ENST00000529637 OR51T1Q8NGJ9 327 aa12.39□□□□□ -0.43
USP48-213ENST00000529637 OR52M1Q8NGK5 317 aa12.39□□□□□ -0.43
USP48-213ENST00000529637 OR14K1Q8NGZ2 314 aa12.39□□□□□ -0.43
USP48-213ENST00000529637 KCNG3Q8TAE7 436 aa12.39□□□□□ -0.43
USP48-213ENST00000529637 RPL36A-HNRNPH2H7BZ11 118 aa12.39□□□□□ -0.43
USP48-213ENST00000529637 CLDN17P56750 224 aa12.39□□□□□ -0.43
USP48-213ENST00000529637 RND3P61587 244 aa12.39□□□□□ -0.43
USP48-213ENST00000529637 CCL7P80098 99 aa12.39□□□□□ -0.43
USP48-213ENST00000529637 CHRFAM7AQ494W8 412 aa12.39□□□□□ -0.43
USP48-213ENST00000529637 ZFP62Q8NB50 900 aaPredicted RBP12.39□□□□□ -0.43
USP48-213ENST00000529637 OR8B12Q8NGG6 310 aa12.39□□□□□ -0.43
USP48-213ENST00000529637 FBLN5Q9UBX5 448 aa12.39□□□□□ -0.43
USP48-213ENST00000529637 LIPGQ9Y5X9 500 aa12.39□□□□□ -0.43
USP48-213ENST00000529637 SHANK1Q9Y566 2161 aa12.39□□□□□ -0.43
USP48-213ENST00000529637 C5orf63A6NC05 138 aa12.38□□□□□ -0.43
USP48-213ENST00000529637 GDF9O60383 454 aa12.38□□□□□ -0.43
USP48-213ENST00000529637 BLVRBP30043 206 aaPredicted RBP12.38□□□□□ -0.43
USP48-213ENST00000529637 NOVA1P51513 510 aaKnown RBP12.38□□□□□ -0.43
USP48-213ENST00000529637 SULF2Q8IWU5 870 aa12.38□□□□□ -0.43
USP48-213ENST00000529637 PGAM5Q96HS1 289 aa12.38□□□□□ -0.43
USP48-213ENST00000529637 SHDQ96IW2 340 aa12.38□□□□□ -0.43
USP48-213ENST00000529637 LURAP1Q96LR2 239 aa12.38□□□□□ -0.43
USP48-213ENST00000529637 NUDT16L1Q9BRJ7 211 aaKnown RBP12.38□□□□□ -0.43
USP48-213ENST00000529637 IGHV3-15A0A0B4J1V0 119 aa12.38□□□□□ -0.43
USP48-213ENST00000529637 IGKV1-9A0A0C4DH69 117 aa12.38□□□□□ -0.43
USP48-213ENST00000529637 RBFOX3A6NFN3 312 aa12.38□□□□□ -0.43
USP48-213ENST00000529637 K7N7A8 449 aa12.38□□□□□ -0.43
USP48-213ENST00000529637 PHOX2AO14813 284 aa12.38□□□□□ -0.43
USP48-213ENST00000529637 FOSL2P15408 326 aa12.38□□□□□ -0.43
USP48-213ENST00000529637 IL2RGP31785 369 aa12.38□□□□□ -0.43
USP48-213ENST00000529637 NKX6-1P78426 367 aaPredicted RBP12.38□□□□□ -0.43
USP48-213ENST00000529637 HIKESHIQ53FT3 197 aa12.38□□□□□ -0.43
USP48-213ENST00000529637 ZNF385CQ66K41 422 aaPredicted RBP12.38□□□□□ -0.43
USP48-213ENST00000529637 LRRC18Q8N456 261 aa12.38□□□□□ -0.43
USP48-213ENST00000529637 CYB561D1Q8N8Q1 229 aa12.38□□□□□ -0.43
USP48-213ENST00000529637 POC1BQ8TC44 478 aa12.38□□□□□ -0.43
USP48-213ENST00000529637 PLEKHA2Q9HB19 425 aa12.38□□□□□ -0.43
USP48-213ENST00000529637 MCTS1Q9ULC4 181 aaKnown RBP12.38□□□□□ -0.43
USP48-213ENST00000529637 BORCS7-ASMTA0A0B4J1R7 106 aa12.37□□□□□ -0.43
USP48-213ENST00000529637 E5RGE8 158 aa12.37□□□□□ -0.43
USP48-213ENST00000529637 IFNA21P01568 189 aa12.37□□□□□ -0.43
USP48-213ENST00000529637 RGS19P49795 217 aa12.37□□□□□ -0.43
USP48-213ENST00000529637 SPSB3Q6PJ21 355 aa12.37□□□□□ -0.43
USP48-213ENST00000529637 SGPP2Q8IWX5 399 aa12.37□□□□□ -0.43
USP48-213ENST00000529637 ATG101Q9BSB4 218 aa12.37□□□□□ -0.43
USP48-213ENST00000529637 PCED1AQ9H1Q7 454 aa12.37□□□□□ -0.43
USP48-213ENST00000529637 NSG2Q9Y328 171 aa12.37□□□□□ -0.43
USP48-213ENST00000529637 NCOA6Q14686 2063 aaPredicted RBP12.37□□□□□ -0.43
USP48-213ENST00000529637 TSTD3H0UI37 97 aa12.37□□□□□ -0.43
USP48-213ENST00000529637 MSTNO14793 375 aa12.37□□□□□ -0.43
USP48-213ENST00000529637 CELA2AP08217 269 aa12.37□□□□□ -0.43
USP48-213ENST00000529637 USF2Q15853 346 aaPredicted RBP12.37□□□□□ -0.43
USP48-213ENST00000529637 C6orf201Q7Z4U5 140 aa12.37□□□□□ -0.43
USP48-213ENST00000529637 TOMM40LQ969M1 308 aa12.37□□□□□ -0.43
USP48-213ENST00000529637 PACRGQ96M98 296 aaPredicted RBP12.37□□□□□ -0.43
USP48-213ENST00000529637 OR10A2Q9H208 303 aa12.37□□□□□ -0.43
USP48-213ENST00000529637 WASF3Q9UPY6 502 aa12.37□□□□□ -0.43
USP48-213ENST00000529637 ZDBF2Q9HCK1 2354 aa12.37□□□□□ -0.43
USP48-213ENST00000529637 E9PLN8 166 aa12.37□□□□□ -0.43
USP48-213ENST00000529637 TLX3O43711 291 aaPredicted RBP12.37□□□□□ -0.43
USP48-213ENST00000529637 CXCL12P48061 93 aa12.37□□□□□ -0.43
USP48-213ENST00000529637 RSPO4Q2I0M5 234 aaPredicted RBP12.37□□□□□ -0.43
USP48-213ENST00000529637 RAET1LQ5VY80 246 aa12.37□□□□□ -0.43
USP48-213ENST00000529637 BEND4Q6ZU67 534 aa12.37□□□□□ -0.43
USP48-213ENST00000529637 C5orf24Q7Z6I8 188 aa12.37□□□□□ -0.43
USP48-213ENST00000529637 ZNF429Q86V71 674 aa12.37□□□□□ -0.43
USP48-213ENST00000529637 C17orf78Q8N4C9 275 aa12.37□□□□□ -0.43
USP48-213ENST00000529637 LIN37Q96GY3 246 aaPredicted RBP12.37□□□□□ -0.43
USP48-213ENST00000529637 ZNF581Q9P0T4 197 aa12.37□□□□□ -0.43
USP48-213ENST00000529637 AHCTF1Q8WYP5 2266 aa12.37□□□□□ -0.43
USP48-213ENST00000529637 A0A1W2PQM1 296 aa12.36□□□□□ -0.43
USP48-213ENST00000529637 TRAF3IP2O43734 574 aaPredicted RBP12.36□□□□□ -0.43
USP48-213ENST00000529637 SRP19P09132 144 aaKnown RBP12.36□□□□□ -0.43
USP48-213ENST00000529637 OR5AC1P0C628 307 aa12.36□□□□□ -0.43
USP48-213ENST00000529637 PGA4P0DJD7 388 aa12.36□□□□□ -0.43
USP48-213ENST00000529637 PGA3P0DJD8 388 aa12.36□□□□□ -0.43
USP48-213ENST00000529637 MSX1P28360 303 aa12.36□□□□□ -0.43
USP48-213ENST00000529637 SUCLG1P53597 346 aaKnown RBP12.36□□□□□ -0.43
USP48-213ENST00000529637 SPCS3P61009 180 aa12.36□□□□□ -0.43
USP48-213ENST00000529637 NAXEQ8NCW5 288 aa12.36□□□□□ -0.43
USP48-213ENST00000529637 CCDC74BQ96LY2 380 aa12.36□□□□□ -0.43
USP48-213ENST00000529637 RASL10BQ96S79 203 aa12.36□□□□□ -0.43
USP48-213ENST00000529637 NEU1Q99519 415 aa12.36□□□□□ -0.43
USP48-213ENST00000529637 HIST1H2BLQ99880 126 aa12.36□□□□□ -0.43
USP48-213ENST00000529637 CRYM-AS1A6NIL9 109 aa12.36□□□□□ -0.43
USP48-213ENST00000529637 JMJD7P0C870 316 aa12.36□□□□□ -0.43
USP48-213ENST00000529637 PGA5P0DJD9 388 aa12.36□□□□□ -0.43
USP48-213ENST00000529637 OR5H8P0DN80 308 aa12.36□□□□□ -0.43
USP48-213ENST00000529637 RRADP55042 308 aa12.36□□□□□ -0.43
USP48-213ENST00000529637 PIGPP57054 158 aa12.36□□□□□ -0.43
USP48-213ENST00000529637 TAS2R46P59540 309 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms