RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 WDR86Q86TI4 376 aa6.23□□□□□ -1.41
CD44-228ENST00000528455 ZCCHC24Q8N2G6 241 aaKnown RBP6.23□□□□□ -1.41
CD44-228ENST00000528455 FAM89BQ8N5H3 189 aa6.23□□□□□ -1.41
CD44-228ENST00000528455 DTX3Q8N9I9 347 aa6.23□□□□□ -1.41
CD44-228ENST00000528455 OR10AD1Q8NGE0 317 aa6.23□□□□□ -1.41
CD44-228ENST00000528455 OR51T1Q8NGJ9 327 aa6.23□□□□□ -1.41
CD44-228ENST00000528455 MCFD2Q8NI22 146 aa6.23□□□□□ -1.41
CD44-228ENST00000528455 Q8TCH9 128 aa6.23□□□□□ -1.41
CD44-228ENST00000528455 NPRL2Q8WTW4 380 aa6.23□□□□□ -1.41
CD44-228ENST00000528455 TNFAIP8L1Q8WVP5 186 aa6.23□□□□□ -1.41
CD44-228ENST00000528455 RAB40AQ8WXH6 277 aa6.23□□□□□ -1.41
CD44-228ENST00000528455 S100A16Q96FQ6 103 aaKnown RBP6.23□□□□□ -1.41
CD44-228ENST00000528455 C1orf147Q96MC9 270 aaPredicted RBP6.23□□□□□ -1.41
CD44-228ENST00000528455 FOXC2Q99958 501 aa6.23□□□□□ -1.41
CD44-228ENST00000528455 VRK1Q99986 396 aaPredicted RBP6.23□□□□□ -1.41
CD44-228ENST00000528455 DCUN1D5Q9BTE7 237 aa6.23□□□□□ -1.41
CD44-228ENST00000528455 CST11Q9H112 138 aa6.23□□□□□ -1.41
CD44-228ENST00000528455 ABCG5Q9H222 651 aa6.23□□□□□ -1.41
CD44-228ENST00000528455 LIME1Q9H400 295 aa6.23□□□□□ -1.41
CD44-228ENST00000528455 UBTD1Q9HAC8 227 aa6.23□□□□□ -1.41
CD44-228ENST00000528455 DLL4Q9NR61 685 aa6.23□□□□□ -1.41
CD44-228ENST00000528455 PTTG2Q9NZH5 202 aa6.23□□□□□ -1.41
CD44-228ENST00000528455 MTCH1Q9NZJ7 389 aa6.23□□□□□ -1.41
CD44-228ENST00000528455 OR5V1Q9UGF6 321 aa6.23□□□□□ -1.41
CD44-228ENST00000528455 PPP1R3CQ9UQK1 317 aa6.23□□□□□ -1.41
CD44-228ENST00000528455 MRPS28Q9Y2Q9 187 aaKnown RBP6.23□□□□□ -1.41
CD44-228ENST00000528455 PEX16Q9Y5Y5 336 aa6.23□□□□□ -1.41
CD44-228ENST00000528455 MED13LQ71F56 2210 aa6.23□□□□□ -1.41
CD44-228ENST00000528455 METTL21EPA6NDL7 271 aa6.22□□□□□ -1.41
CD44-228ENST00000528455 LRRC30A6NM36 301 aa6.22□□□□□ -1.41
CD44-228ENST00000528455 DBX1A6NMT0 343 aa6.22□□□□□ -1.41
CD44-228ENST00000528455 TMEM14DPA8MWL7 114 aa6.22□□□□□ -1.41
CD44-228ENST00000528455 J3QT63 122 aa6.22□□□□□ -1.41
CD44-228ENST00000528455 CTDSP2O14595 271 aa6.22□□□□□ -1.41
CD44-228ENST00000528455 TPD52L2O43399 206 aaKnown RBP6.22□□□□□ -1.41
CD44-228ENST00000528455 CLPXO76031 633 aa6.22□□□□□ -1.41
CD44-228ENST00000528455 APOA1P02647 267 aa6.22□□□□□ -1.41
CD44-228ENST00000528455 CHRM2P08172 466 aa6.22□□□□□ -1.41
CD44-228ENST00000528455 PGA5P0DJD9 388 aa6.22□□□□□ -1.41
CD44-228ENST00000528455 GTF2F2P13984 249 aa6.22□□□□□ -1.41
CD44-228ENST00000528455 IRF2P14316 349 aa6.22□□□□□ -1.41
CD44-228ENST00000528455 PAX1P15863 534 aa6.22□□□□□ -1.41
CD44-228ENST00000528455 PMELP40967 661 aa6.22□□□□□ -1.41
CD44-228ENST00000528455 OR3A4PP47883 348 aa6.22□□□□□ -1.41
CD44-228ENST00000528455 POU3F4P49335 361 aa6.22□□□□□ -1.41
CD44-228ENST00000528455 EFNA4P52798 201 aa6.22□□□□□ -1.41
CD44-228ENST00000528455 TMEM33P57088 247 aa6.22□□□□□ -1.41
CD44-228ENST00000528455 MPPED2Q15777 294 aa6.22□□□□□ -1.41
CD44-228ENST00000528455 NHLRC3Q5JS37 347 aa6.22□□□□□ -1.41
CD44-228ENST00000528455 AWAT2Q6E213 333 aa6.22□□□□□ -1.41
CD44-228ENST00000528455 WDR82Q6UXN9 313 aa6.22□□□□□ -1.41
CD44-228ENST00000528455 FAM90A1Q86YD7 464 aa6.22□□□□□ -1.41
CD44-228ENST00000528455 C1QL4Q86Z23 238 aa6.22□□□□□ -1.41
CD44-228ENST00000528455 OSR2Q8N2R0 312 aa6.22□□□□□ -1.41
CD44-228ENST00000528455 POC1AQ8NBT0 407 aa6.22□□□□□ -1.41
CD44-228ENST00000528455 OR11L1Q8NGX0 322 aa6.22□□□□□ -1.41
CD44-228ENST00000528455 CHAC2Q8WUX2 184 aa6.22□□□□□ -1.41
CD44-228ENST00000528455 ITLN1Q8WWA0 313 aa6.22□□□□□ -1.41
CD44-228ENST00000528455 GTF3AQ92664 365 aaKnown RBP6.22□□□□□ -1.41
CD44-228ENST00000528455 RDH5Q92781 318 aa6.22□□□□□ -1.41
CD44-228ENST00000528455 RFT1Q96AA3 541 aa6.22□□□□□ -1.41
CD44-228ENST00000528455 MBD6Q96DN6 1003 aa6.22□□□□□ -1.41
CD44-228ENST00000528455 CEP19Q96LK0 163 aa6.22□□□□□ -1.41
CD44-228ENST00000528455 URM1Q9BTM9 101 aaKnown RBP6.22□□□□□ -1.41
CD44-228ENST00000528455 SAP30LQ9HAJ7 183 aa6.22□□□□□ -1.41
CD44-228ENST00000528455 HMG20AQ9NP66 347 aa6.22□□□□□ -1.41
CD44-228ENST00000528455 ZNF701Q9NV72 531 aaPredicted RBP6.22□□□□□ -1.41
CD44-228ENST00000528455 C1orf123Q9NWV4 160 aa6.22□□□□□ -1.41
CD44-228ENST00000528455 RNF7Q9UBF6 113 aa6.22□□□□□ -1.41
CD44-228ENST00000528455 COMMD3Q9UBI1 195 aa6.22□□□□□ -1.41
CD44-228ENST00000528455 RABL2AQ9UBK7 228 aaPredicted RBP6.22□□□□□ -1.41
CD44-228ENST00000528455 RABL2BQ9UNT1 228 aa6.22□□□□□ -1.41
CD44-228ENST00000528455 PLEKHA6Q9Y2H5 1048 aa6.22□□□□□ -1.41
CD44-228ENST00000528455 PRRC2AP48634 2157 aaKnown RBP6.21□□□□□ -1.41
CD44-228ENST00000528455 VPS13CQ709C8 3753 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 A0A0A6YYH2 397 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 IGKV1-12A0A0C4DH73 117 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 IGHV1-69-2A0A0G2JMI3 117 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 TMEM272A0A1B0GTI8 110 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 SMIM30A4D0T7 59 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 FAM90A10PA6NDY2 464 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 FAM90A18PA6NE21 464 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 FAM90A16PA6NEW6 464 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 FAM90A20PA6NIJ5 464 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 A6NJ64 397 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 FAM90A8PA6NJQ4 464 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 FAM90A7PA6NKC0 464 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 FAM90A22PA8MWA6 464 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 FAM90A12PA8MX19 464 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 FAM90A5PA8MXJ8 464 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 FAM90A23PA8MXZ1 464 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 SRRM5B3KS81 715 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 SPRY1O43609 319 aaPredicted RBP6.21□□□□□ -1.42
CD44-228ENST00000528455 NDUFA2O43678 99 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 SYNGR1O43759 233 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 ANGPTL7O43827 346 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 RHBDL1O75783 438 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 SCGNO76038 276 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 PAHP00439 452 aa6.21□□□□□ -1.42
CD44-228ENST00000528455 IGKV1D-12P01611 117 aa6.21□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms