RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 SSX5O60225 188 aa17.79■□□□□ 0.44
VPS28-208ENST00000527797 SPNP16150 400 aa17.79■□□□□ 0.44
VPS28-208ENST00000527797 RCVRNP35243 200 aa17.79■□□□□ 0.44
VPS28-208ENST00000527797 ATAD3CQ5T2N8 411 aa17.79■□□□□ 0.44
VPS28-208ENST00000527797 ITLN1Q8WWA0 313 aa17.79■□□□□ 0.44
VPS28-208ENST00000527797 DHRS9Q9BPW9 319 aa17.79■□□□□ 0.44
VPS28-208ENST00000527797 FAAP24Q9BTP7 215 aa17.79■□□□□ 0.44
VPS28-208ENST00000527797 FN3KRPQ9HA64 309 aa17.79■□□□□ 0.44
VPS28-208ENST00000527797 IFT46Q9NQC8 304 aa17.79■□□□□ 0.44
VPS28-208ENST00000527797 ZNF107Q9UII5 783 aaPredicted RBP17.79■□□□□ 0.44
VPS28-208ENST00000527797 NAP1L6A6NFF2 107 aa17.78■□□□□ 0.44
VPS28-208ENST00000527797 M0R233 179 aa17.78■□□□□ 0.44
VPS28-208ENST00000527797 ADH4P08319 380 aa17.78■□□□□ 0.44
VPS28-208ENST00000527797 CBX5P45973 191 aa17.78■□□□□ 0.44
VPS28-208ENST00000527797 IKZF1Q13422 519 aa17.78■□□□□ 0.44
VPS28-208ENST00000527797 DAZAP2Q15038 168 aaPredicted RBP17.78■□□□□ 0.44
VPS28-208ENST00000527797 EFNB3Q15768 340 aa17.78■□□□□ 0.44
VPS28-208ENST00000527797 ZNF672Q499Z4 452 aaPredicted RBP17.78■□□□□ 0.44
VPS28-208ENST00000527797 FIP1L1Q6UN15 594 aaKnown RBP17.78■□□□□ 0.44
VPS28-208ENST00000527797 CCBE1Q6UXH8 406 aaPredicted RBP17.78■□□□□ 0.44
VPS28-208ENST00000527797 LILRB1Q8NHL6 650 aaPredicted RBP17.78■□□□□ 0.44
VPS28-208ENST00000527797 FAM222BQ8WU58 562 aa17.78■□□□□ 0.44
VPS28-208ENST00000527797 HRASLSQ9HDD0 168 aa17.78■□□□□ 0.44
VPS28-208ENST00000527797 DIDO1Q9BTC0 2240 aaKnown RBP17.77■□□□□ 0.44
VPS28-208ENST00000527797 FAM240BA0A1B0GVZ2 78 aa17.77■□□□□ 0.44
VPS28-208ENST00000527797 C17orf100A8MU93 164 aa17.77■□□□□ 0.44
VPS28-208ENST00000527797 MT-ND4P03905 459 aa17.77■□□□□ 0.44
VPS28-208ENST00000527797 FCER2P06734 321 aa17.77■□□□□ 0.44
VPS28-208ENST00000527797 DUSP1P28562 367 aa17.77■□□□□ 0.44
VPS28-208ENST00000527797 FAUP35544 74 aaKnown RBP17.77■□□□□ 0.44
VPS28-208ENST00000527797 GATA4P43694 442 aa17.77■□□□□ 0.44
VPS28-208ENST00000527797 TAS2R19P59542 299 aa17.77■□□□□ 0.44
VPS28-208ENST00000527797 GMFBP60983 142 aa17.77■□□□□ 0.44
VPS28-208ENST00000527797 TMEM229BQ8NBD8 167 aa17.77■□□□□ 0.44
VPS28-208ENST00000527797 OR10Z1Q8NGY1 313 aa17.77■□□□□ 0.44
VPS28-208ENST00000527797 SULT4A1Q9BR01 284 aa17.77■□□□□ 0.44
VPS28-208ENST00000527797 OCSTAMPQ9BR26 566 aa17.77■□□□□ 0.44
VPS28-208ENST00000527797 SPACA1Q9HBV2 294 aa17.77■□□□□ 0.44
VPS28-208ENST00000527797 HES4Q9HCC6 221 aa17.77■□□□□ 0.44
VPS28-208ENST00000527797 KALRNO60229 2985 aa17.76■□□□□ 0.43
VPS28-208ENST00000527797 B9A039 149 aa17.76■□□□□ 0.43
VPS28-208ENST00000527797 C3orf80F5H4A9 247 aa17.76■□□□□ 0.43
VPS28-208ENST00000527797 CFHR2P36980 270 aa17.76■□□□□ 0.43
VPS28-208ENST00000527797 PMELP40967 661 aa17.76■□□□□ 0.43
VPS28-208ENST00000527797 MRPS15P82914 257 aaKnown RBP17.76■□□□□ 0.43
VPS28-208ENST00000527797 MOGAT3Q86VF5 341 aa17.76■□□□□ 0.43
VPS28-208ENST00000527797 LRRC29Q8WV35 223 aa17.76■□□□□ 0.43
VPS28-208ENST00000527797 CYYR1Q96J86 154 aa17.76■□□□□ 0.43
VPS28-208ENST00000527797 C19orf84I3L1E1 186 aa17.76■□□□□ 0.43
VPS28-208ENST00000527797 CD55P08174 381 aa17.76■□□□□ 0.43
VPS28-208ENST00000527797 AKAIN1P0CW23 69 aa17.76■□□□□ 0.43
VPS28-208ENST00000527797 GLRA1P23415 457 aa17.76■□□□□ 0.43
VPS28-208ENST00000527797 SPRNQ5BIV9 151 aa17.76■□□□□ 0.43
VPS28-208ENST00000527797 SPIN3Q5JUX0 258 aa17.76■□□□□ 0.43
VPS28-208ENST00000527797 BRICD5Q6PL45 260 aa17.76■□□□□ 0.43
VPS28-208ENST00000527797 GVQW1Q8N7I0 195 aa17.76■□□□□ 0.43
VPS28-208ENST00000527797 DUSP18Q8NEJ0 188 aa17.76■□□□□ 0.43
VPS28-208ENST00000527797 ERGIC1Q969X5 290 aa17.76■□□□□ 0.43
VPS28-208ENST00000527797 CMSS1Q9BQ75 279 aaKnown RBP17.76■□□□□ 0.43
VPS28-208ENST00000527797 DYNLRB1Q9NP97 96 aa17.76■□□□□ 0.43
VPS28-208ENST00000527797 RCC2Q9P258 522 aaKnown RBP17.76■□□□□ 0.43
VPS28-208ENST00000527797 AK3Q9UIJ7 227 aa17.76■□□□□ 0.43
VPS28-208ENST00000527797 UBE2QL1A1L167 161 aa17.75■□□□□ 0.43
VPS28-208ENST00000527797 ZNF736B4DX44 427 aaPredicted RBP17.75■□□□□ 0.43
VPS28-208ENST00000527797 DEGS1O15121 323 aa17.75■□□□□ 0.43
VPS28-208ENST00000527797 CD3DP04234 171 aa17.75■□□□□ 0.43
VPS28-208ENST00000527797 SLC6A1P30531 599 aa17.75■□□□□ 0.43
VPS28-208ENST00000527797 BTCP35070 178 aa17.75■□□□□ 0.43
VPS28-208ENST00000527797 STEAP1BQ6NZ63 245 aa17.75■□□□□ 0.43
VPS28-208ENST00000527797 ACP7Q6ZNF0 438 aa17.75■□□□□ 0.43
VPS28-208ENST00000527797 FBXW5Q969U6 566 aa17.75■□□□□ 0.43
VPS28-208ENST00000527797 MS4A5Q9H3V2 200 aa17.75■□□□□ 0.43
VPS28-208ENST00000527797 IFT22Q9H7X7 185 aa17.75■□□□□ 0.43
VPS28-208ENST00000527797 RASL12Q9NYN1 266 aa17.75■□□□□ 0.43
VPS28-208ENST00000527797 NLKQ9UBE8 527 aa17.75■□□□□ 0.43
VPS28-208ENST00000527797 GLS2Q9UI32 602 aa17.75■□□□□ 0.43
VPS28-208ENST00000527797 ANAPC10Q9UM13 185 aa17.75■□□□□ 0.43
VPS28-208ENST00000527797 HIVEP3Q5T1R4 2406 aa17.75■□□□□ 0.43
VPS28-208ENST00000527797 HCFC1P51610 2035 aa17.75■□□□□ 0.43
VPS28-208ENST00000527797 MCRIP1C9JLW8 97 aa17.74■□□□□ 0.43
VPS28-208ENST00000527797 SH2D1BO14796 132 aa17.74■□□□□ 0.43
VPS28-208ENST00000527797 WNT9BO14905 357 aa17.74■□□□□ 0.43
VPS28-208ENST00000527797 TNFRSF1AP19438 455 aa17.74■□□□□ 0.43
VPS28-208ENST00000527797 HLA-DMAP28067 261 aa17.74■□□□□ 0.43
VPS28-208ENST00000527797 ZNF146Q15072 292 aa17.74■□□□□ 0.43
VPS28-208ENST00000527797 MST1LQ2TV78 715 aa17.74■□□□□ 0.43
VPS28-208ENST00000527797 PLET1Q6UQ28 207 aa17.74■□□□□ 0.43
VPS28-208ENST00000527797 WDR13Q9H1Z4 485 aa17.74■□□□□ 0.43
VPS28-208ENST00000527797 DPAGT1Q9H3H5 408 aa17.74■□□□□ 0.43
VPS28-208ENST00000527797 MCUBQ9NWR8 336 aa17.74■□□□□ 0.43
VPS28-208ENST00000527797 PLEKHA6Q9Y2H5 1048 aa17.74■□□□□ 0.43
VPS28-208ENST00000527797 hCG_2014768A0A024R1R8 64 aa17.73■□□□□ 0.43
VPS28-208ENST00000527797 GLAP06280 429 aa17.73■□□□□ 0.43
VPS28-208ENST00000527797 ZNF44P15621 663 aa17.73■□□□□ 0.43
VPS28-208ENST00000527797 IGFBP2P18065 325 aa17.73■□□□□ 0.43
VPS28-208ENST00000527797 GIFP27352 417 aa17.73■□□□□ 0.43
VPS28-208ENST00000527797 SMIM21Q3B7S5 101 aa17.73■□□□□ 0.43
VPS28-208ENST00000527797 FAM209AQ5JX71 171 aa17.73■□□□□ 0.43
VPS28-208ENST00000527797 Q6P435 159 aa17.73■□□□□ 0.43
VPS28-208ENST00000527797 HOGA1Q86XE5 327 aa17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 64 ms