RNA–Protein interactions for RNA: ENST00000526204.5

VPS28-205, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,120 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-205ENST00000526204 FAM173AQ9BQD7 235 aa18.36■□□□□ 0.53
VPS28-205ENST00000526204 SLC2A9Q9NRM0 540 aa18.36■□□□□ 0.53
VPS28-205ENST00000526204 NSG2Q9Y328 171 aa18.36■□□□□ 0.53
VPS28-205ENST00000526204 LSM5Q9Y4Y9 91 aaKnown RBP18.36■□□□□ 0.53
VPS28-205ENST00000526204 TMEM33P57088 247 aa18.35■□□□□ 0.53
VPS28-205ENST00000526204 FXYD4P59646 89 aa18.35■□□□□ 0.53
VPS28-205ENST00000526204 SRSF3P84103 164 aaKnown RBP18.35■□□□□ 0.53
VPS28-205ENST00000526204 BRICD5Q6PL45 260 aa18.35■□□□□ 0.53
VPS28-205ENST00000526204 LIAT1Q6ZQX7 453 aa18.35■□□□□ 0.53
VPS28-205ENST00000526204 ZC3HAV1Q7Z2W4 902 aaKnown RBP18.35■□□□□ 0.53
VPS28-205ENST00000526204 NAXEQ8NCW5 288 aa18.35■□□□□ 0.53
VPS28-205ENST00000526204 CPEB3Q8NE35 698 aaKnown RBP18.35■□□□□ 0.53
VPS28-205ENST00000526204 DYRK2Q92630 601 aa18.35■□□□□ 0.53
VPS28-205ENST00000526204 RHOFQ9HBH0 211 aa18.35■□□□□ 0.53
VPS28-205ENST00000526204 FBXL17Q9UF56 701 aa18.35■□□□□ 0.53
VPS28-205ENST00000526204 FAM90A10PA6NDY2 464 aa18.35■□□□□ 0.53
VPS28-205ENST00000526204 FAM90A18PA6NE21 464 aa18.35■□□□□ 0.53
VPS28-205ENST00000526204 FAM90A16PA6NEW6 464 aa18.35■□□□□ 0.53
VPS28-205ENST00000526204 FAM90A20PA6NIJ5 464 aa18.35■□□□□ 0.53
VPS28-205ENST00000526204 FAM90A8PA6NJQ4 464 aa18.35■□□□□ 0.53
VPS28-205ENST00000526204 FAM90A7PA6NKC0 464 aa18.35■□□□□ 0.53
VPS28-205ENST00000526204 FAM90A22PA8MWA6 464 aa18.35■□□□□ 0.53
VPS28-205ENST00000526204 FAM90A12PA8MX19 464 aa18.35■□□□□ 0.53
VPS28-205ENST00000526204 FAM90A5PA8MXJ8 464 aa18.35■□□□□ 0.53
VPS28-205ENST00000526204 FAM90A23PA8MXZ1 464 aa18.35■□□□□ 0.53
VPS28-205ENST00000526204 MED6O75586 246 aa18.35■□□□□ 0.53
VPS28-205ENST00000526204 TSPAN9O75954 239 aa18.35■□□□□ 0.53
VPS28-205ENST00000526204 FAM90A15PP0C7V4 464 aa18.35■□□□□ 0.53
VPS28-205ENST00000526204 FAM90A13PP0C7W8 464 aa18.35■□□□□ 0.53
VPS28-205ENST00000526204 FAM90A14PP0C7W9 464 aa18.35■□□□□ 0.53
VPS28-205ENST00000526204 FAM90A24PP0C7X0 464 aa18.35■□□□□ 0.53
VPS28-205ENST00000526204 GUCA2BQ16661 112 aa18.35■□□□□ 0.53
VPS28-205ENST00000526204 SP6Q3SY56 376 aa18.35■□□□□ 0.53
VPS28-205ENST00000526204 LGI3Q8N145 548 aa18.35■□□□□ 0.53
VPS28-205ENST00000526204 ZNF611Q8N823 705 aa18.35■□□□□ 0.53
VPS28-205ENST00000526204 CCDC71LQ8N9Z2 235 aa18.35■□□□□ 0.53
VPS28-205ENST00000526204 Q8NFD4 153 aa18.35■□□□□ 0.53
VPS28-205ENST00000526204 THOC3Q96J01 351 aaKnown RBP18.35■□□□□ 0.53
VPS28-205ENST00000526204 B4GALT7Q9UBV7 327 aa18.35■□□□□ 0.53
VPS28-205ENST00000526204 AMDHD2Q9Y303 409 aa18.35■□□□□ 0.53
VPS28-205ENST00000526204 STARD10Q9Y365 291 aa18.35■□□□□ 0.53
VPS28-205ENST00000526204 CFAP54Q96N23 3096 aa18.35■□□□□ 0.53
VPS28-205ENST00000526204 FAM221AA4D161 298 aa18.34■□□□□ 0.53
VPS28-205ENST00000526204 H7C1Q1 480 aa18.34■□□□□ 0.53
VPS28-205ENST00000526204 SNAPINO95295 136 aa18.34■□□□□ 0.53
VPS28-205ENST00000526204 SPINK14Q6IE38 97 aa18.34■□□□□ 0.53
VPS28-205ENST00000526204 RAB11FIP2Q7L804 512 aa18.34■□□□□ 0.53
VPS28-205ENST00000526204 UBAC2Q8NBM4 344 aa18.34■□□□□ 0.53
VPS28-205ENST00000526204 C18orf12Q96KH6 178 aa18.34■□□□□ 0.53
VPS28-205ENST00000526204 DDA1Q9BW61 102 aa18.34■□□□□ 0.53
VPS28-205ENST00000526204 ZNF442Q9H7R0 627 aa18.34■□□□□ 0.53
VPS28-205ENST00000526204 PARP11Q9NR21 331 aa18.34■□□□□ 0.53
VPS28-205ENST00000526204 DMDP11532 3685 aa18.34■□□□□ 0.53
VPS28-205ENST00000526204 PRSS44E7EML9 344 aa18.34■□□□□ 0.53
VPS28-205ENST00000526204 MBPP02686 304 aaPredicted RBP18.34■□□□□ 0.53
VPS28-205ENST00000526204 RCC1P18754 421 aaPredicted RBP18.34■□□□□ 0.53
VPS28-205ENST00000526204 HERV-K104P61576 105 aa18.34■□□□□ 0.53
VPS28-205ENST00000526204 ZXDAP98168 799 aa18.34■□□□□ 0.53
VPS28-205ENST00000526204 SLC25A26Q70HW3 274 aa18.34■□□□□ 0.53
VPS28-205ENST00000526204 TLNRD1Q9H1K6 362 aa18.34■□□□□ 0.53
VPS28-205ENST00000526204 PLSCR2Q9NRY7 297 aa18.34■□□□□ 0.53
VPS28-205ENST00000526204 FBXO9Q9UK97 447 aaPredicted RBP18.34■□□□□ 0.53
VPS28-205ENST00000526204 ZNF587BE7ETH6 402 aa18.33■□□□□ 0.52
VPS28-205ENST00000526204 SCGB1D2O95969 90 aa18.33■□□□□ 0.52
VPS28-205ENST00000526204 H2AFB1P0C5Y9 115 aa18.33■□□□□ 0.52
VPS28-205ENST00000526204 ZNF883P0CG24 379 aa18.33■□□□□ 0.52
VPS28-205ENST00000526204 LPAR6P43657 344 aa18.33■□□□□ 0.52
VPS28-205ENST00000526204 PHLDA2Q53GA4 152 aa18.33■□□□□ 0.52
VPS28-205ENST00000526204 DBX2Q6ZNG2 339 aa18.33■□□□□ 0.52
VPS28-205ENST00000526204 LDLRAD3Q86YD5 345 aa18.33■□□□□ 0.52
VPS28-205ENST00000526204 CALHM1Q8IU99 346 aa18.33■□□□□ 0.52
VPS28-205ENST00000526204 OR2M7Q8NG81 312 aa18.33■□□□□ 0.52
VPS28-205ENST00000526204 RSRP1Q9BUV0 290 aa18.33■□□□□ 0.52
VPS28-205ENST00000526204 POMT1Q9Y6A1 747 aa18.33■□□□□ 0.52
VPS28-205ENST00000526204 RPL36A-HNRNPH2H7BZ11 118 aa18.32■□□□□ 0.52
VPS28-205ENST00000526204 OR7C1O76099 320 aaPredicted RBP18.32■□□□□ 0.52
VPS28-205ENST00000526204 IGHV3-9P01782 118 aa18.32■□□□□ 0.52
VPS28-205ENST00000526204 DUSP1P28562 367 aa18.32■□□□□ 0.52
VPS28-205ENST00000526204 F2RL1P55085 397 aa18.32■□□□□ 0.52
VPS28-205ENST00000526204 ARF1P84077 181 aaKnown RBP18.32■□□□□ 0.52
VPS28-205ENST00000526204 GPR157Q5UAW9 335 aa18.32■□□□□ 0.52
VPS28-205ENST00000526204 LYZL2Q7Z4W2 148 aa18.32■□□□□ 0.52
VPS28-205ENST00000526204 SPRY4Q9C004 299 aa18.32■□□□□ 0.52
VPS28-205ENST00000526204 SLC7A10Q9NS82 523 aa18.32■□□□□ 0.52
VPS28-205ENST00000526204 ZNF205O95201 554 aa18.32■□□□□ 0.52
VPS28-205ENST00000526204 F10P00742 488 aa18.32■□□□□ 0.52
VPS28-205ENST00000526204 JMJD7P0C870 316 aa18.32■□□□□ 0.52
VPS28-205ENST00000526204 NME2P22392 152 aa18.32■□□□□ 0.52
VPS28-205ENST00000526204 LHX2P50458 406 aa18.32■□□□□ 0.52
VPS28-205ENST00000526204 HAGHLQ6PII5 290 aaPredicted RBP18.32■□□□□ 0.52
VPS28-205ENST00000526204 BTNL8Q6UX41 500 aa18.32■□□□□ 0.52
VPS28-205ENST00000526204 Q6ZS49 121 aa18.32■□□□□ 0.52
VPS28-205ENST00000526204 SAXO1Q8IYX7 474 aa18.32■□□□□ 0.52
VPS28-205ENST00000526204 GLYATL2Q8WU03 294 aa18.32■□□□□ 0.52
VPS28-205ENST00000526204 MSI2Q96DH6 328 aaKnown RBP18.32■□□□□ 0.52
VPS28-205ENST00000526204 NRIP2Q9BQI9 281 aa18.32■□□□□ 0.52
VPS28-205ENST00000526204 REPIN1Q9BWE0 567 aaKnown RBP18.32■□□□□ 0.52
VPS28-205ENST00000526204 ZNF703Q9H7S9 590 aaPredicted RBP18.32■□□□□ 0.52
VPS28-205ENST00000526204 FAM86C1Q9NVL1 165 aa18.32■□□□□ 0.52
VPS28-205ENST00000526204 RCC2Q9P258 522 aaKnown RBP18.32■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms