RNA–Protein interactions for RNA: ENST00000526054.5

VPS28-204, Transcript of VPS28, ESCRT-I subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS28, Length 892 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-204ENST00000526054 BATF2Q8N1L9 274 aa8.4□□□□□ -1.06
VPS28-204ENST00000526054 NKAIN3Q8N8D7 197 aa8.4□□□□□ -1.06
VPS28-204ENST00000526054 ZSCAN4Q8NAM6 433 aaPredicted RBP8.4□□□□□ -1.06
VPS28-204ENST00000526054 OR5D18Q8NGL1 313 aa8.4□□□□□ -1.06
VPS28-204ENST00000526054 ANGPTL6Q8NI99 470 aa8.4□□□□□ -1.06
VPS28-204ENST00000526054 EMG1Q92979 244 aaKnown RBP8.4□□□□□ -1.06
VPS28-204ENST00000526054 MUL1Q969V5 352 aa8.4□□□□□ -1.06
VPS28-204ENST00000526054 SLC25A28Q96A46 364 aa8.4□□□□□ -1.06
VPS28-204ENST00000526054 SEH1LQ96EE3 360 aa8.4□□□□□ -1.06
VPS28-204ENST00000526054 MED30Q96HR3 178 aa8.4□□□□□ -1.06
VPS28-204ENST00000526054 C1orf147Q96MC9 270 aaPredicted RBP8.4□□□□□ -1.06
VPS28-204ENST00000526054 ZNF48Q96MX3 618 aaPredicted RBP8.4□□□□□ -1.06
VPS28-204ENST00000526054 CCL13Q99616 98 aa8.4□□□□□ -1.06
VPS28-204ENST00000526054 FAM192AQ9GZU8 254 aa8.4□□□□□ -1.06
VPS28-204ENST00000526054 MS4A7Q9GZW8 240 aaPredicted RBP8.4□□□□□ -1.06
VPS28-204ENST00000526054 RHOFQ9HBH0 211 aa8.4□□□□□ -1.06
VPS28-204ENST00000526054 HES4Q9HCC6 221 aa8.4□□□□□ -1.06
VPS28-204ENST00000526054 SMURF1Q9HCE7 757 aa8.4□□□□□ -1.06
VPS28-204ENST00000526054 NOX4Q9NPH5 578 aa8.4□□□□□ -1.06
VPS28-204ENST00000526054 CTSZQ9UBR2 303 aa8.4□□□□□ -1.06
VPS28-204ENST00000526054 MEGF8Q7Z7M0 2845 aa8.39□□□□□ -1.07
VPS28-204ENST00000526054 TRAV8-7A0A075B6U6 113 aa8.39□□□□□ -1.07
VPS28-204ENST00000526054 IGHV3OR16-10A0A075B7F0 116 aa8.39□□□□□ -1.07
VPS28-204ENST00000526054 TRAV40A0A0B4J280 105 aa8.39□□□□□ -1.07
VPS28-204ENST00000526054 A0A1W2PPK0 400 aa8.39□□□□□ -1.07
VPS28-204ENST00000526054 GABRPO00591 440 aa8.39□□□□□ -1.07
VPS28-204ENST00000526054 TNFRSF13BO14836 293 aaPredicted RBP8.39□□□□□ -1.07
VPS28-204ENST00000526054 NDUFB3O43676 98 aa8.39□□□□□ -1.07
VPS28-204ENST00000526054 ANGPTL7O43827 346 aa8.39□□□□□ -1.07
VPS28-204ENST00000526054 KDM4BO94953 1096 aa8.39□□□□□ -1.07
VPS28-204ENST00000526054 INMTO95050 263 aa8.39□□□□□ -1.07
VPS28-204ENST00000526054 KNG1P01042 644 aa8.39□□□□□ -1.07
VPS28-204ENST00000526054 RNASE1P07998 156 aaKnown RBP8.39□□□□□ -1.07
VPS28-204ENST00000526054 TMEM225BP0DP42 221 aa8.39□□□□□ -1.07
VPS28-204ENST00000526054 PSG2P11465 335 aa8.39□□□□□ -1.07
VPS28-204ENST00000526054 BCL3P20749 454 aa8.39□□□□□ -1.07
VPS28-204ENST00000526054 ZNF93P35789 620 aaPredicted RBP8.39□□□□□ -1.07
VPS28-204ENST00000526054 BMXP51813 675 aa8.39□□□□□ -1.07
VPS28-204ENST00000526054 ZP1P60852 638 aa8.39□□□□□ -1.07
VPS28-204ENST00000526054 ERVK11-1P61568 191 aa8.39□□□□□ -1.07
VPS28-204ENST00000526054 RPS25P62851 125 aaKnown RBP8.39□□□□□ -1.07
VPS28-204ENST00000526054 IL13RA1P78552 427 aa8.39□□□□□ -1.07
VPS28-204ENST00000526054 C11orf91Q3C1V1 193 aa8.39□□□□□ -1.07
VPS28-204ENST00000526054 HSD17B12Q53GQ0 312 aa8.39□□□□□ -1.07
VPS28-204ENST00000526054 SYT6Q5T7P8 510 aaPredicted RBP8.39□□□□□ -1.07
VPS28-204ENST00000526054 UNQ9370/PRO34162Q6UXP9 181 aa8.39□□□□□ -1.07
VPS28-204ENST00000526054 ZNF788Q6ZQV5 615 aa8.39□□□□□ -1.07
VPS28-204ENST00000526054 CEACAM19Q7Z692 300 aa8.39□□□□□ -1.07
VPS28-204ENST00000526054 FAM216BQ8N7L0 139 aa8.39□□□□□ -1.07
VPS28-204ENST00000526054 PXT1Q8NFP0 134 aa8.39□□□□□ -1.07
VPS28-204ENST00000526054 OR5T2Q8NGG2 359 aa8.39□□□□□ -1.07
VPS28-204ENST00000526054 OR52N4Q8NGI2 321 aa8.39□□□□□ -1.07
VPS28-204ENST00000526054 TNFAIP8L1Q8WVP5 186 aa8.39□□□□□ -1.07
VPS28-204ENST00000526054 ST8SIA4Q92187 359 aa8.39□□□□□ -1.07
VPS28-204ENST00000526054 PHYHIPQ92561 330 aa8.39□□□□□ -1.07
VPS28-204ENST00000526054 TMEM203Q969S6 136 aa8.39□□□□□ -1.07
VPS28-204ENST00000526054 ORAI1Q96D31 301 aa8.39□□□□□ -1.07
VPS28-204ENST00000526054 GAFA1Q96PS6 74 aa8.39□□□□□ -1.07
VPS28-204ENST00000526054 S100A13Q99584 98 aa8.39□□□□□ -1.07
VPS28-204ENST00000526054 SLITRK2Q9H156 845 aa8.39□□□□□ -1.07
VPS28-204ENST00000526054 UNKLQ9H9P5 680 aaKnown RBP8.39□□□□□ -1.07
VPS28-204ENST00000526054 TCF7L1Q9HCS4 588 aa8.39□□□□□ -1.07
VPS28-204ENST00000526054 NDUFB11Q9NX14 153 aa8.39□□□□□ -1.07
VPS28-204ENST00000526054 MTCH1Q9NZJ7 389 aa8.39□□□□□ -1.07
VPS28-204ENST00000526054 OR14J1Q9UGF5 321 aa8.39□□□□□ -1.07
VPS28-204ENST00000526054 GLS2Q9UI32 602 aa8.39□□□□□ -1.07
VPS28-204ENST00000526054 ZNF222Q9UK12 451 aa8.39□□□□□ -1.07
VPS28-204ENST00000526054 IGKV1D-17A0A075B6S4 117 aa8.38□□□□□ -1.07
VPS28-204ENST00000526054 IGHV2-70DA0A0C4DH43 119 aa8.38□□□□□ -1.07
VPS28-204ENST00000526054 SMIM31A0A1B0GVY4 71 aa8.38□□□□□ -1.07
VPS28-204ENST00000526054 MEGF11A6BM72 1044 aa8.38□□□□□ -1.07
VPS28-204ENST00000526054 RFPL4AA6NLU0 287 aa8.38□□□□□ -1.07
VPS28-204ENST00000526054 RFPL4AL1F8VTS6 287 aa8.38□□□□□ -1.07
VPS28-204ENST00000526054 CLDN34H7C241 214 aa8.38□□□□□ -1.07
VPS28-204ENST00000526054 CCRL2O00421 344 aa8.38□□□□□ -1.07
VPS28-204ENST00000526054 DVL1O14640 695 aa8.38□□□□□ -1.07
VPS28-204ENST00000526054 GPR37O15354 613 aa8.38□□□□□ -1.07
VPS28-204ENST00000526054 SIGLEC5O15389 551 aa8.38□□□□□ -1.07
VPS28-204ENST00000526054 PIN1P1O15428 100 aa8.38□□□□□ -1.07
VPS28-204ENST00000526054 KCNAB3O43448 404 aa8.38□□□□□ -1.07
VPS28-204ENST00000526054 ENSAO43768 121 aaKnown RBP8.38□□□□□ -1.07
VPS28-204ENST00000526054 SC5DO75845 299 aa8.38□□□□□ -1.07
VPS28-204ENST00000526054 ARL6IP5O75915 188 aa8.38□□□□□ -1.07
VPS28-204ENST00000526054 ECDO95905 644 aaPredicted RBP8.38□□□□□ -1.07
VPS28-204ENST00000526054 MAS1P04201 325 aa8.38□□□□□ -1.07
VPS28-204ENST00000526054 UCHL1P09936 223 aa8.38□□□□□ -1.07
VPS28-204ENST00000526054 PPIAL4GP0DN37 164 aa8.38□□□□□ -1.07
VPS28-204ENST00000526054 IGHV4-38-2P0DP08 117 aa8.38□□□□□ -1.07
VPS28-204ENST00000526054 PRKACAP17612 351 aa8.38□□□□□ -1.07
VPS28-204ENST00000526054 GP2P55259 537 aaKnown RBP8.38□□□□□ -1.07
VPS28-204ENST00000526054 PAX8Q06710 450 aa8.38□□□□□ -1.07
VPS28-204ENST00000526054 IKZF1Q13422 519 aa8.38□□□□□ -1.07
VPS28-204ENST00000526054 INSL4Q14641 139 aa8.38□□□□□ -1.07
VPS28-204ENST00000526054 SLC9A3R2Q15599 337 aa8.38□□□□□ -1.07
VPS28-204ENST00000526054 SSX1Q16384 188 aa8.38□□□□□ -1.07
VPS28-204ENST00000526054 SPIN3Q5JUX0 258 aa8.38□□□□□ -1.07
VPS28-204ENST00000526054 CD276Q5ZPR3 534 aa8.38□□□□□ -1.07
VPS28-204ENST00000526054 ZNF841Q6ZN19 808 aa8.38□□□□□ -1.07
VPS28-204ENST00000526054 CDH26Q8IXH8 852 aa8.38□□□□□ -1.07
VPS28-204ENST00000526054 FAM58AQ8N1B3 248 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms