RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 MRPL54Q6P161 138 aaKnown RBP10.02□□□□□ -0.81
LIMCH1-217ENST00000512946 RPS19BP1Q86WX3 136 aaKnown RBP10.02□□□□□ -0.81
LIMCH1-217ENST00000512946 HIST1H4GQ99525 98 aa10.02□□□□□ -0.81
LIMCH1-217ENST00000512946 OPN3Q9H1Y3 402 aaPredicted RBP10.02□□□□□ -0.81
LIMCH1-217ENST00000512946 V9GYH0 126 aa10.02□□□□□ -0.81
LIMCH1-217ENST00000512946 MYH6P13533 1939 aa10.02□□□□□ -0.81
LIMCH1-217ENST00000512946 IGLV3-10A0A075B6K4 115 aa10.01□□□□□ -0.81
LIMCH1-217ENST00000512946 LOC105378220A0A1B0GUY1 285 aaPredicted RBP10.01□□□□□ -0.81
LIMCH1-217ENST00000512946 HMX2A2RU54 273 aa10.01□□□□□ -0.81
LIMCH1-217ENST00000512946 TNFRSF1AP19438 455 aa10.01□□□□□ -0.81
LIMCH1-217ENST00000512946 ACP1P24666 158 aa10.01□□□□□ -0.81
LIMCH1-217ENST00000512946 GPR3P46089 330 aa10.01□□□□□ -0.81
LIMCH1-217ENST00000512946 MRPL58Q14197 206 aaKnown RBP10.01□□□□□ -0.81
LIMCH1-217ENST00000512946 KISS1Q15726 138 aa10.01□□□□□ -0.81
LIMCH1-217ENST00000512946 ZNF880Q6PDB4 577 aa10.01□□□□□ -0.81
LIMCH1-217ENST00000512946 SLC36A1Q7Z2H8 476 aa10.01□□□□□ -0.81
LIMCH1-217ENST00000512946 C16orf82Q7Z2V1 217 aa10.01□□□□□ -0.81
LIMCH1-217ENST00000512946 TGIF2LXQ8IUE1 241 aa10.01□□□□□ -0.81
LIMCH1-217ENST00000512946 ABHD1Q96SE0 405 aa10.01□□□□□ -0.81
LIMCH1-217ENST00000512946 C1QTNF6Q9BXI9 259 aa10.01□□□□□ -0.81
LIMCH1-217ENST00000512946 CRXO43186 299 aaPredicted RBP10.01□□□□□ -0.81
LIMCH1-217ENST00000512946 GOSR1O95249 250 aa10.01□□□□□ -0.81
LIMCH1-217ENST00000512946 EWSR1Q01844 656 aaKnown RBP eCLIP10.01□□□□□ -0.81
LIMCH1-217ENST00000512946 EIF3IQ13347 325 aaKnown RBP10.01□□□□□ -0.81
LIMCH1-217ENST00000512946 PUSL1Q8N0Z8 303 aaKnown RBP10.01□□□□□ -0.81
LIMCH1-217ENST00000512946 RHBDD1Q8TEB9 315 aa10.01□□□□□ -0.81
LIMCH1-217ENST00000512946 RPEQ96AT9 228 aa10.01□□□□□ -0.81
LIMCH1-217ENST00000512946 ARHGAP5-AS1Q96IT6 56 aa10.01□□□□□ -0.81
LIMCH1-217ENST00000512946 RARRES2Q99969 163 aa10.01□□□□□ -0.81
LIMCH1-217ENST00000512946 AMMECR1Q9Y4X0 333 aaPredicted RBP10.01□□□□□ -0.81
LIMCH1-217ENST00000512946 A0A087WUJ7 227 aa10.01□□□□□ -0.81
LIMCH1-217ENST00000512946 RBFOX2O43251 390 aaKnown RBP eCLIP10.01□□□□□ -0.81
LIMCH1-217ENST00000512946 CD74P04233 296 aa10.01□□□□□ -0.81
LIMCH1-217ENST00000512946 RPS20P60866 119 aaKnown RBP10.01□□□□□ -0.81
LIMCH1-217ENST00000512946 METRNLQ641Q3 311 aa10.01□□□□□ -0.81
LIMCH1-217ENST00000512946 DEFB119Q8N690 84 aa10.01□□□□□ -0.81
LIMCH1-217ENST00000512946 ZNF740Q8NDX6 193 aa10.01□□□□□ -0.81
LIMCH1-217ENST00000512946 NOXO1Q8NFA2 376 aa10.01□□□□□ -0.81
LIMCH1-217ENST00000512946 SLC52A3Q9NQ40 469 aa10.01□□□□□ -0.81
LIMCH1-217ENST00000512946 ERRFI1Q9UJM3 462 aaPredicted RBP10.01□□□□□ -0.81
LIMCH1-217ENST00000512946 LRP12Q9Y561 859 aa10.01□□□□□ -0.81
LIMCH1-217ENST00000512946 RBP4P02753 201 aa10.01□□□□□ -0.81
LIMCH1-217ENST00000512946 FAM157CP0CG43 387 aa10.01□□□□□ -0.81
LIMCH1-217ENST00000512946 EPHA8P29322 1005 aaPredicted RBP10.01□□□□□ -0.81
LIMCH1-217ENST00000512946 TMEM40Q8WWA1 233 aa10.01□□□□□ -0.81
LIMCH1-217ENST00000512946 SNRNP40Q96DI7 357 aaKnown RBP10.01□□□□□ -0.81
LIMCH1-217ENST00000512946 ALG14Q96F25 216 aa10.01□□□□□ -0.81
LIMCH1-217ENST00000512946 THOC3Q96J01 351 aaKnown RBP10.01□□□□□ -0.81
LIMCH1-217ENST00000512946 HS3ST3A1Q9Y663 406 aa10.01□□□□□ -0.81
LIMCH1-217ENST00000512946 FAM221AA4D161 298 aa10□□□□□ -0.81
LIMCH1-217ENST00000512946 FRG2CA6NGY1 282 aa10□□□□□ -0.81
LIMCH1-217ENST00000512946 OR4C46A6NHA9 309 aa10□□□□□ -0.81
LIMCH1-217ENST00000512946 OGG1O15527 345 aa10□□□□□ -0.81
LIMCH1-217ENST00000512946 SOD3P08294 240 aa10□□□□□ -0.81
LIMCH1-217ENST00000512946 DNLZQ5SXM8 178 aa10□□□□□ -0.81
LIMCH1-217ENST00000512946 CALHM1Q8IU99 346 aa10□□□□□ -0.81
LIMCH1-217ENST00000512946 TUSC5Q8IXB3 177 aa10□□□□□ -0.81
LIMCH1-217ENST00000512946 FAM216AQ8WUB2 273 aa10□□□□□ -0.81
LIMCH1-217ENST00000512946 CLN8Q9UBY8 286 aa10□□□□□ -0.81
LIMCH1-217ENST00000512946 TUBD1Q9UJT1 453 aa10□□□□□ -0.81
LIMCH1-217ENST00000512946 A0A1W2PR48 441 aa10□□□□□ -0.81
LIMCH1-217ENST00000512946 EIF3GO75821 320 aaKnown RBP eCLIP10□□□□□ -0.81
LIMCH1-217ENST00000512946 NGFP01138 241 aa10□□□□□ -0.81
LIMCH1-217ENST00000512946 POU2F2P09086 479 aa10□□□□□ -0.81
LIMCH1-217ENST00000512946 PSG5Q15238 335 aa10□□□□□ -0.81
LIMCH1-217ENST00000512946 CRYGNQ8WXF5 182 aa10□□□□□ -0.81
LIMCH1-217ENST00000512946 GGACTQ9BVM4 153 aa10□□□□□ -0.81
LIMCH1-217ENST00000512946 UFC1Q9Y3C8 167 aa10□□□□□ -0.81
LIMCH1-217ENST00000512946 TCRBV5S1A1TA0A578 114 aa10□□□□□ -0.81
LIMCH1-217ENST00000512946 SIGLEC5O15389 551 aa10□□□□□ -0.81
LIMCH1-217ENST00000512946 PAGE4O60829 102 aa10□□□□□ -0.81
LIMCH1-217ENST00000512946 SNAI1O95863 264 aaPredicted RBP10□□□□□ -0.81
LIMCH1-217ENST00000512946 BHLHE23Q8NDY6 225 aa10□□□□□ -0.81
LIMCH1-217ENST00000512946 OR1F12Q8NHA8 337 aa10□□□□□ -0.81
LIMCH1-217ENST00000512946 PRNDQ9UKY0 176 aa10□□□□□ -0.81
LIMCH1-217ENST00000512946 SIGLEC7Q9Y286 467 aa10□□□□□ -0.81
LIMCH1-217ENST00000512946 KLF13Q9Y2Y9 288 aaPredicted RBP10□□□□□ -0.81
LIMCH1-217ENST00000512946 CDC14BO60729 498 aa10□□□□□ -0.81
LIMCH1-217ENST00000512946 MOSPD3O75425 235 aa10□□□□□ -0.81
LIMCH1-217ENST00000512946 PRSS23O95084 383 aa10□□□□□ -0.81
LIMCH1-217ENST00000512946 EPPINO95925 133 aa10□□□□□ -0.81
LIMCH1-217ENST00000512946 TRGC2P03986 189 aa10□□□□□ -0.81
LIMCH1-217ENST00000512946 SEMG1P04279 462 aa10□□□□□ -0.81
LIMCH1-217ENST00000512946 PRR35P0CG20 571 aa10□□□□□ -0.81
LIMCH1-217ENST00000512946 MFAP2P55001 183 aa10□□□□□ -0.81
LIMCH1-217ENST00000512946 KLF3P57682 345 aaPredicted RBP10□□□□□ -0.81
LIMCH1-217ENST00000512946 C21orf58P58505 322 aa10□□□□□ -0.81
LIMCH1-217ENST00000512946 POLR2GP62487 172 aaKnown RBP eCLIP10□□□□□ -0.81
LIMCH1-217ENST00000512946 JAG1P78504 1218 aa10□□□□□ -0.81
LIMCH1-217ENST00000512946 KLF9Q13886 244 aaPredicted RBP10□□□□□ -0.81
LIMCH1-217ENST00000512946 ZNF506Q5JVG8 444 aa10□□□□□ -0.81
LIMCH1-217ENST00000512946 FAM27D1Q5T7N8 215 aa10□□□□□ -0.81
LIMCH1-217ENST00000512946 DMKNQ6E0U4 476 aaPredicted RBP10□□□□□ -0.81
LIMCH1-217ENST00000512946 OR11H7Q8NGC8 314 aa10□□□□□ -0.81
LIMCH1-217ENST00000512946 OR10AG1Q8NH19 301 aa10□□□□□ -0.81
LIMCH1-217ENST00000512946 ATOH1Q92858 354 aaPredicted RBP10□□□□□ -0.81
LIMCH1-217ENST00000512946 FGF21Q9NSA1 209 aa10□□□□□ -0.81
LIMCH1-217ENST00000512946 CLDN16Q9Y5I7 305 aa10□□□□□ -0.81
LIMCH1-217ENST00000512946 PIK3C2BO00750 1634 aa10□□□□□ -0.81
LIMCH1-217ENST00000512946 A1L4Q6 167 aa9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms