RNA–Protein interactions for RNA: ENST00000510187.5

SQSTM1-213, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-213ENST00000510187 SNRNP40Q96DI7 357 aaKnown RBP13.89□□□□□ -0.19
SQSTM1-213ENST00000510187 METTL9Q9H1A3 318 aa13.89□□□□□ -0.19
SQSTM1-213ENST00000510187 METTL8Q9H825 291 aaKnown RBP13.89□□□□□ -0.19
SQSTM1-213ENST00000510187 DECR2Q9NUI1 292 aa13.89□□□□□ -0.19
SQSTM1-213ENST00000510187 C1orf123Q9NWV4 160 aa13.89□□□□□ -0.19
SQSTM1-213ENST00000510187 ZNF391Q9UJN7 358 aa13.89□□□□□ -0.19
SQSTM1-213ENST00000510187 HSF4Q9ULV5 492 aa13.89□□□□□ -0.19
SQSTM1-213ENST00000510187 MAP1BP46821 2468 aaKnown RBP13.88□□□□□ -0.19
SQSTM1-213ENST00000510187 ZNF716A6NP11 495 aa13.88□□□□□ -0.19
SQSTM1-213ENST00000510187 TOR1AO14656 332 aa13.88□□□□□ -0.19
SQSTM1-213ENST00000510187 HTR3BO95264 441 aa13.88□□□□□ -0.19
SQSTM1-213ENST00000510187 IFNA2P01563 188 aa13.88□□□□□ -0.19
SQSTM1-213ENST00000510187 CSTBP04080 98 aaKnown RBP13.88□□□□□ -0.19
SQSTM1-213ENST00000510187 CTSDP07339 412 aaPredicted RBP13.88□□□□□ -0.19
SQSTM1-213ENST00000510187 LY6DQ14210 128 aa13.88□□□□□ -0.19
SQSTM1-213ENST00000510187 CNN3Q15417 329 aaKnown RBP13.88□□□□□ -0.19
SQSTM1-213ENST00000510187 ATRAIDQ6UW56 229 aa13.88□□□□□ -0.19
SQSTM1-213ENST00000510187 IL34Q6ZMJ4 242 aa13.88□□□□□ -0.19
SQSTM1-213ENST00000510187 FBXO17Q96EF6 278 aa13.88□□□□□ -0.19
SQSTM1-213ENST00000510187 AIFM2Q9BRQ8 373 aa13.88□□□□□ -0.19
SQSTM1-213ENST00000510187 NKX6-2Q9C056 277 aaPredicted RBP13.88□□□□□ -0.19
SQSTM1-213ENST00000510187 PKD1L2Q7Z442 2459 aa13.88□□□□□ -0.19
SQSTM1-213ENST00000510187 TMEM218A2RU14 115 aa13.87□□□□□ -0.19
SQSTM1-213ENST00000510187 SDCBPO00560 298 aaPredicted RBP13.87□□□□□ -0.19
SQSTM1-213ENST00000510187 SGCEO43556 437 aa13.87□□□□□ -0.19
SQSTM1-213ENST00000510187 SYNGR3O43761 229 aa13.87□□□□□ -0.19
SQSTM1-213ENST00000510187 ATG12O94817 140 aa13.87□□□□□ -0.19
SQSTM1-213ENST00000510187 SERPINA5P05154 406 aa13.87□□□□□ -0.19
SQSTM1-213ENST00000510187 PI3P19957 117 aa13.87□□□□□ -0.19
SQSTM1-213ENST00000510187 GLRA1P23415 457 aa13.87□□□□□ -0.19
SQSTM1-213ENST00000510187 DTYMKP23919 212 aa13.87□□□□□ -0.19
SQSTM1-213ENST00000510187 RBMXP38159 391 aaKnown RBP13.87□□□□□ -0.19
SQSTM1-213ENST00000510187 DEFA5Q01523 94 aa13.87□□□□□ -0.19
SQSTM1-213ENST00000510187 SCRN3Q0VDG4 424 aa13.87□□□□□ -0.19
SQSTM1-213ENST00000510187 KRTAP27-1Q3LI81 207 aa13.87□□□□□ -0.19
SQSTM1-213ENST00000510187 PRR30Q53SZ7 412 aaPredicted RBP13.87□□□□□ -0.19
SQSTM1-213ENST00000510187 NKAPLQ5M9Q1 402 aa13.87□□□□□ -0.19
SQSTM1-213ENST00000510187 PIGTQ969N2 578 aa13.87□□□□□ -0.19
SQSTM1-213ENST00000510187 SGK3Q96BR1 496 aa13.87□□□□□ -0.19
SQSTM1-213ENST00000510187 ZNF775Q96BV0 537 aaPredicted RBP13.87□□□□□ -0.19
SQSTM1-213ENST00000510187 MMP26Q9NRE1 261 aa13.87□□□□□ -0.19
SQSTM1-213ENST00000510187 OR5AC2Q9NZP5 309 aa13.87□□□□□ -0.19
SQSTM1-213ENST00000510187 TLN1Q9Y490 2541 aaKnown RBP13.87□□□□□ -0.19
SQSTM1-213ENST00000510187 PRRC2CQ9Y520 2896 aaKnown RBP13.87□□□□□ -0.19
SQSTM1-213ENST00000510187 SLC22A20A6NK97 555 aa13.87□□□□□ -0.19
SQSTM1-213ENST00000510187 TDGF1P3P51864 188 aa13.87□□□□□ -0.19
SQSTM1-213ENST00000510187 SNAI3Q3KNW1 292 aa13.87□□□□□ -0.19
SQSTM1-213ENST00000510187 EIF5AL1Q6IS14 154 aaKnown RBP13.87□□□□□ -0.19
SQSTM1-213ENST00000510187 ZNF585AQ6P3V2 769 aa13.87□□□□□ -0.19
SQSTM1-213ENST00000510187 ASCL4Q6XD76 172 aa13.87□□□□□ -0.19
SQSTM1-213ENST00000510187 CPT1CQ8TCG5 803 aa13.87□□□□□ -0.19
SQSTM1-213ENST00000510187 SAT2Q96F10 170 aaPredicted RBP13.87□□□□□ -0.19
SQSTM1-213ENST00000510187 NARS2Q96I59 477 aaKnown RBP13.87□□□□□ -0.19
SQSTM1-213ENST00000510187 OR10C1Q96KK4 312 aa13.87□□□□□ -0.19
SQSTM1-213ENST00000510187 CNTNAP3BQ96NU0 1288 aa13.87□□□□□ -0.19
SQSTM1-213ENST00000510187 CNTNAP3Q9BZ76 1288 aa13.87□□□□□ -0.19
SQSTM1-213ENST00000510187 SLC5A7Q9GZV3 580 aa13.87□□□□□ -0.19
SQSTM1-213ENST00000510187 ELL3Q9HB65 397 aaPredicted RBP13.87□□□□□ -0.19
SQSTM1-213ENST00000510187 ZNF701Q9NV72 531 aaPredicted RBP13.87□□□□□ -0.19
SQSTM1-213ENST00000510187 PLEKHJ1Q9NW61 149 aa13.87□□□□□ -0.19
SQSTM1-213ENST00000510187 ZNF175Q9Y473 711 aa13.87□□□□□ -0.19
SQSTM1-213ENST00000510187 MSGN1A6NI15 193 aa13.86□□□□□ -0.19
SQSTM1-213ENST00000510187 ABCD4O14678 606 aa13.86□□□□□ -0.19
SQSTM1-213ENST00000510187 TPD52L2O43399 206 aaKnown RBP13.86□□□□□ -0.19
SQSTM1-213ENST00000510187 DBHP09172 617 aa13.86□□□□□ -0.19
SQSTM1-213ENST00000510187 PTGER4P35408 488 aa13.86□□□□□ -0.19
SQSTM1-213ENST00000510187 MTCP1P56278 107 aa13.86□□□□□ -0.19
SQSTM1-213ENST00000510187 RAB32Q13637 225 aa13.86□□□□□ -0.19
SQSTM1-213ENST00000510187 RNPS1Q15287 305 aaKnown RBP13.86□□□□□ -0.19
SQSTM1-213ENST00000510187 C10orf91Q5T1B1 145 aa13.86□□□□□ -0.19
SQSTM1-213ENST00000510187 LHFPL2Q6ZUX7 228 aa13.86□□□□□ -0.19
SQSTM1-213ENST00000510187 SGPP2Q8IWX5 399 aa13.86□□□□□ -0.19
SQSTM1-213ENST00000510187 MCEMP1Q8IX19 187 aa13.86□□□□□ -0.19
SQSTM1-213ENST00000510187 ZNF100Q8IYN0 542 aa13.86□□□□□ -0.19
SQSTM1-213ENST00000510187 SVBPQ8N300 66 aa13.86□□□□□ -0.19
SQSTM1-213ENST00000510187 CLRN3Q8NCR9 226 aa13.86□□□□□ -0.19
SQSTM1-213ENST00000510187 OR1F12Q8NHA8 337 aa13.86□□□□□ -0.19
SQSTM1-213ENST00000510187 TRIB1Q96RU8 372 aa13.86□□□□□ -0.19
SQSTM1-213ENST00000510187 RGCCQ9H4X1 137 aa13.86□□□□□ -0.19
SQSTM1-213ENST00000510187 TMEM38BQ9NVV0 291 aa13.86□□□□□ -0.19
SQSTM1-213ENST00000510187 NCOA6Q14686 2063 aaPredicted RBP13.85□□□□□ -0.19
SQSTM1-213ENST00000510187 IGKV3D-15A0A087WSY6 115 aa13.85□□□□□ -0.19
SQSTM1-213ENST00000510187 OR6C6A6NF89 314 aa13.85□□□□□ -0.19
SQSTM1-213ENST00000510187 AHRRA9YTQ3 701 aa13.85□□□□□ -0.19
SQSTM1-213ENST00000510187 FAM157CP0CG43 387 aa13.85□□□□□ -0.19
SQSTM1-213ENST00000510187 TMEM225BP0DP42 221 aa13.85□□□□□ -0.19
SQSTM1-213ENST00000510187 P4HA3Q7Z4N8 544 aa13.85□□□□□ -0.19
SQSTM1-213ENST00000510187 C6orf201Q7Z4U5 140 aa13.85□□□□□ -0.19
SQSTM1-213ENST00000510187 TMED6Q8WW62 240 aa13.85□□□□□ -0.19
SQSTM1-213ENST00000510187 REEP6Q96HR9 211 aa13.85□□□□□ -0.19
SQSTM1-213ENST00000510187 GPR173Q9NS66 373 aa13.85□□□□□ -0.19
SQSTM1-213ENST00000510187 LPAR3Q9UBY5 353 aa13.85□□□□□ -0.19
SQSTM1-213ENST00000510187 ANXA10Q9UJ72 324 aa13.85□□□□□ -0.19
SQSTM1-213ENST00000510187 CARHSP1Q9Y2V2 147 aaKnown RBP13.85□□□□□ -0.19
SQSTM1-213ENST00000510187 SVILO95425 2214 aa13.85□□□□□ -0.19
SQSTM1-213ENST00000510187 CRYM-AS1A6NIL9 109 aa13.84□□□□□ -0.19
SQSTM1-213ENST00000510187 KCNAB3O43448 404 aa13.84□□□□□ -0.19
SQSTM1-213ENST00000510187 GABRR1P24046 479 aa13.84□□□□□ -0.19
SQSTM1-213ENST00000510187 RBM39Q14498 530 aaKnown RBP13.84□□□□□ -0.19
SQSTM1-213ENST00000510187 RSU1Q15404 277 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms