RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 MOSPD3O75425 235 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 KLKB1P03952 638 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 SP1P08047 785 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 RBMY1DP0C7P1 496 aaKnown RBP3.2□□□□□ -1.9
USP53-205ENST00000509769 RBMY1A1P0DJD3 496 aaKnown RBP3.2□□□□□ -1.9
USP53-205ENST00000509769 RBMY1CP0DJD4 496 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 OR8G3PP0DMU2 310 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 FBLP22087 321 aaKnown RBP3.2□□□□□ -1.9
USP53-205ENST00000509769 CBLN1P23435 193 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 TSPAN7P41732 249 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 XCR1P46094 333 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 RPL30P62888 115 aaKnown RBP3.2□□□□□ -1.9
USP53-205ENST00000509769 SLC38A11Q08AI6 406 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 HYAL2Q12891 473 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 DCAF12L1Q5VU92 463 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 CD300LDQ6UXZ3 194 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 SLC25A42Q86VD7 318 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 PELI3Q8N2H9 469 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 ZFP41Q8N8Y5 198 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 GPR32P1Q8NGA4 272 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 MARCH1Q8TCQ1 289 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 MRAPQ8TCY5 172 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 DYNLRB2Q8TF09 96 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 PP6455Q8WZ26 134 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 SPSB1Q96BD6 273 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 ZG16BQ96DA0 208 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 ZNF714Q96N38 554 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 MS4A8Q9BY19 250 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 SMOC2Q9H3U7 446 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 GPR84Q9NQS5 396 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 PLSCR3Q9NRY6 295 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 TMEM30AQ9NV96 361 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 PPT2Q9UMR5 302 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 PIAS3Q9Y6X2 628 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 V9GYY9 64 aa3.2□□□□□ -1.9
USP53-205ENST00000509769 TRBV20-1A0A075B6N2 111 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 TRAV9-2A0A087WT02 112 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 TRAV38-1A0A0B4J264 116 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 A0A1B0GTH9 108 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 A0A1B0GW64 132 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 SMIM30A4D0T7 59 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 NKX2-6A6NCS4 301 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 GAGE12JA6NER3 117 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 ZNF716A6NP11 495 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 OR11H12B2RN74 326 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 GNG7O60262 68 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 LYZL6O75951 148 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 GAGE7O76087 117 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 HLA-DQB1P01920 261 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 IGKV5-2P06315 115 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 GAGE12FP0CL80 117 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 GAGE12GP0CL81 117 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 GAGE12IP0CL82 117 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 INAFM2P0DMQ5 153 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 GPR183P32249 361 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 CAPZBP47756 277 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 CYB561P49447 251 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 CDKN1CP49918 316 aaPredicted RBP3.19□□□□□ -1.9
USP53-205ENST00000509769 CRYBB1P53674 252 aaPredicted RBP3.19□□□□□ -1.9
USP53-205ENST00000509769 SELENOTP62341 195 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 GAGE4Q13068 117 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 GGTLC2Q14390 218 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 CDK5R1Q15078 307 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 KCNMB1Q16558 191 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 TBC1D28Q2M2D7 210 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 LRRC75BQ2VPJ9 315 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 NHLRC3Q5JS37 347 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 C9orf57Q5W0N0 161 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 MFSD12Q6NUT3 480 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 MOB3CQ70IA8 216 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 LINC00596Q86U02 117 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 DCAF4L2Q8NA75 395 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 CPEB3Q8NE35 698 aaKnown RBP3.19□□□□□ -1.9
USP53-205ENST00000509769 OR11H1Q8NG94 326 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 OR11H2Q8NH07 326 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 RNASEH2CQ8TDP1 164 aaKnown RBP3.19□□□□□ -1.9
USP53-205ENST00000509769 FAM163AQ96GL9 167 aaPredicted RBP3.19□□□□□ -1.9
USP53-205ENST00000509769 SSBP3Q9BWW4 388 aaPredicted RBP3.19□□□□□ -1.9
USP53-205ENST00000509769 CMC2Q9NRP2 79 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 HSFX1Q9UBD0 423 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 ZNF346Q9UL40 294 aaKnown RBP3.19□□□□□ -1.9
USP53-205ENST00000509769 MCTS1Q9ULC4 181 aaKnown RBP3.19□□□□□ -1.9
USP53-205ENST00000509769 IER3IP1Q9Y5U9 82 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 TRAV8-2A0A0B4J237 113 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 TRAV5A0A0B4J249 113 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 A0A1B0GU03 582 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 ZCWPW2A0A1B0GU75 182 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 FEZF1A0PJY2 475 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 ZNF732B4DXR9 585 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 NPIPB6E9PJ23 425 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 PF4V1P10720 104 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 GM2AP17900 193 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 ASIPP42127 132 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 CASP6P55212 293 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 RPS23P62266 143 aaKnown RBP3.19□□□□□ -1.9
USP53-205ENST00000509769 BTG2P78543 158 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 DGCR2P98153 550 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 ZNF117Q03924 483 aa3.19□□□□□ -1.9
USP53-205ENST00000509769 SMAD4Q13485 552 aaKnown RBP3.19□□□□□ -1.9
USP53-205ENST00000509769 DOK7Q18PE1 504 aa3.19□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms