RNA–Protein interactions for RNA: ENST00000497203.1

SMC4-225, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 490 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-225ENST00000497203 RPS11P62280 158 aaKnown RBP eCLIP2.16□□□□□ -2.06
SMC4-225ENST00000497203 BNIP2Q12982 314 aa2.16□□□□□ -2.06
SMC4-225ENST00000497203 BIKQ13323 160 aa2.16□□□□□ -2.06
SMC4-225ENST00000497203 USF2Q15853 346 aaPredicted RBP2.16□□□□□ -2.06
SMC4-225ENST00000497203 IGFBP7Q16270 282 aa2.16□□□□□ -2.06
SMC4-225ENST00000497203 SSX1Q16384 188 aa2.16□□□□□ -2.06
SMC4-225ENST00000497203 CEACAM16Q2WEN9 425 aa2.16□□□□□ -2.06
SMC4-225ENST00000497203 UBE2NLQ5JXB2 153 aa2.16□□□□□ -2.06
SMC4-225ENST00000497203 FAM131AQ6UXB0 335 aa2.16□□□□□ -2.06
SMC4-225ENST00000497203 FAM19A1Q7Z5A9 133 aa2.16□□□□□ -2.06
SMC4-225ENST00000497203 ZNF680Q8NEM1 530 aa2.16□□□□□ -2.06
SMC4-225ENST00000497203 OR8G5Q8NG78 346 aa2.16□□□□□ -2.06
SMC4-225ENST00000497203 OR4D6Q8NGJ1 314 aa2.16□□□□□ -2.06
SMC4-225ENST00000497203 OR1P1Q8NH06 330 aa2.16□□□□□ -2.06
SMC4-225ENST00000497203 BLNKQ8WV28 456 aa2.16□□□□□ -2.06
SMC4-225ENST00000497203 PPP1R36Q96LQ0 422 aa2.16□□□□□ -2.06
SMC4-225ENST00000497203 YPEL4Q96NS1 127 aa2.16□□□□□ -2.06
SMC4-225ENST00000497203 SEC22CQ9BRL7 303 aa2.16□□□□□ -2.06
SMC4-225ENST00000497203 SRRQ9GZT4 340 aa2.16□□□□□ -2.06
SMC4-225ENST00000497203 ASB7Q9H672 318 aa2.16□□□□□ -2.06
SMC4-225ENST00000497203 METTL8Q9H825 291 aaKnown RBP2.16□□□□□ -2.06
SMC4-225ENST00000497203 PLEKHA1Q9HB21 404 aa2.16□□□□□ -2.06
SMC4-225ENST00000497203 TMBIM4Q9HC24 238 aa2.16□□□□□ -2.06
SMC4-225ENST00000497203 DHCR7Q9UBM7 475 aaKnown RBP2.16□□□□□ -2.06
SMC4-225ENST00000497203 CLEC2DQ9UHP7 191 aa2.16□□□□□ -2.06
SMC4-225ENST00000497203 NRCAMQ92823 1304 aa2.16□□□□□ -2.06
SMC4-225ENST00000497203 ADAMTSL3P82987 1691 aa2.15□□□□□ -2.06
SMC4-225ENST00000497203 GOLGA8IPA6NC78 632 aa2.15□□□□□ -2.07
SMC4-225ENST00000497203 K7ERQ8 282 aa2.15□□□□□ -2.07
SMC4-225ENST00000497203 PLPP3O14495 311 aa2.15□□□□□ -2.07
SMC4-225ENST00000497203 UBDO15205 165 aa2.15□□□□□ -2.07
SMC4-225ENST00000497203 COX7A2P2O60397 106 aa2.15□□□□□ -2.07
SMC4-225ENST00000497203 PFN1P07737 140 aaKnown RBP2.15□□□□□ -2.07
SMC4-225ENST00000497203 RNASE2P10153 161 aaKnown RBP2.15□□□□□ -2.07
SMC4-225ENST00000497203 IL12BP29460 328 aa2.15□□□□□ -2.07
SMC4-225ENST00000497203 RPA3P35244 121 aaPredicted RBP2.15□□□□□ -2.07
SMC4-225ENST00000497203 GPR176Q14439 515 aa2.15□□□□□ -2.07
SMC4-225ENST00000497203 TTMPQ5BVD1 217 aa2.15□□□□□ -2.07
SMC4-225ENST00000497203 HBMQ6B0K9 141 aa2.15□□□□□ -2.07
SMC4-225ENST00000497203 FA2HQ7L5A8 372 aa2.15□□□□□ -2.07
SMC4-225ENST00000497203 PRNTQ86SH4 94 aa2.15□□□□□ -2.07
SMC4-225ENST00000497203 LINC00596Q86U02 117 aa2.15□□□□□ -2.07
SMC4-225ENST00000497203 SPICQ8N5J4 248 aa2.15□□□□□ -2.07
SMC4-225ENST00000497203 ACBD4Q8NC06 268 aa2.15□□□□□ -2.07
SMC4-225ENST00000497203 C1orf64Q8NEQ6 169 aa2.15□□□□□ -2.07
SMC4-225ENST00000497203 OR4K17Q8NGC6 315 aa2.15□□□□□ -2.07
SMC4-225ENST00000497203 CPB2Q96IY4 423 aa2.15□□□□□ -2.07
SMC4-225ENST00000497203 ZNF396Q96N95 335 aaPredicted RBP2.15□□□□□ -2.07
SMC4-225ENST00000497203 FAM60AQ9NP50 221 aa2.15□□□□□ -2.07
SMC4-225ENST00000497203 OR2S2Q9NQN1 319 aa2.15□□□□□ -2.07
SMC4-225ENST00000497203 NXT1Q9UKK6 140 aaKnown RBP2.15□□□□□ -2.07
SMC4-225ENST00000497203 SLC22A14Q9Y267 594 aa2.15□□□□□ -2.07
SMC4-225ENST00000497203 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP2.14□□□□□ -2.07
SMC4-225ENST00000497203 CECR9P0C854 216 aa2.14□□□□□ -2.07
SMC4-225ENST00000497203 PRTN3P24158 256 aa2.14□□□□□ -2.07
SMC4-225ENST00000497203 ELK4P28324 431 aa2.14□□□□□ -2.07
SMC4-225ENST00000497203 IMPA1P29218 277 aa2.14□□□□□ -2.07
SMC4-225ENST00000497203 LCN1P31025 176 aa2.14□□□□□ -2.07
SMC4-225ENST00000497203 TGFBR1P36897 503 aa2.14□□□□□ -2.07
SMC4-225ENST00000497203 SPAM1P38567 509 aa2.14□□□□□ -2.07
SMC4-225ENST00000497203 GCLMP48507 274 aa2.14□□□□□ -2.07
SMC4-225ENST00000497203 ACOT2P49753 483 aa2.14□□□□□ -2.07
SMC4-225ENST00000497203 IL15RAQ13261 267 aa2.14□□□□□ -2.07
SMC4-225ENST00000497203 FAM53BQ14153 422 aa2.14□□□□□ -2.07
SMC4-225ENST00000497203 Q499Y3 187 aa2.14□□□□□ -2.07
SMC4-225ENST00000497203 TMEM69Q5SWH9 247 aa2.14□□□□□ -2.07
SMC4-225ENST00000497203 CALHM3Q86XJ0 350 aa2.14□□□□□ -2.07
SMC4-225ENST00000497203 CLHC1Q8NHS4 586 aa2.14□□□□□ -2.07
SMC4-225ENST00000497203 ITLN2Q8WWU7 325 aaPredicted RBP2.14□□□□□ -2.07
SMC4-225ENST00000497203 IFT81Q8WYA0 676 aa2.14□□□□□ -2.07
SMC4-225ENST00000497203 PITX2Q99697 317 aa2.14□□□□□ -2.07
SMC4-225ENST00000497203 DHX35Q9H5Z1 703 aaKnown RBP2.14□□□□□ -2.07
SMC4-225ENST00000497203 USH1CQ9Y6N9 552 aa2.14□□□□□ -2.07
SMC4-225ENST00000497203 SEC16AO15027 2179 aa2.14□□□□□ -2.07
SMC4-225ENST00000497203 RPRD2Q5VT52 1461 aaKnown RBP2.14□□□□□ -2.07
SMC4-225ENST00000497203 RBFOX3A6NFN3 312 aa2.13□□□□□ -2.07
SMC4-225ENST00000497203 K7EPK0 472 aa2.13□□□□□ -2.07
SMC4-225ENST00000497203 GYG2O15488 501 aa2.13□□□□□ -2.07
SMC4-225ENST00000497203 FSTL3O95633 263 aa2.13□□□□□ -2.07
SMC4-225ENST00000497203 LDOC1O95751 146 aaPredicted RBP2.13□□□□□ -2.07
SMC4-225ENST00000497203 FADS2O95864 444 aaKnown RBP2.13□□□□□ -2.07
SMC4-225ENST00000497203 SCGB1C2P0DMR2 95 aa2.13□□□□□ -2.07
SMC4-225ENST00000497203 PTHLHP12272 177 aa2.13□□□□□ -2.07
SMC4-225ENST00000497203 MLNP12872 115 aa2.13□□□□□ -2.07
SMC4-225ENST00000497203 PSMB9P28065 219 aa2.13□□□□□ -2.07
SMC4-225ENST00000497203 GTF2H1P32780 548 aa2.13□□□□□ -2.07
SMC4-225ENST00000497203 STX3Q13277 289 aa2.13□□□□□ -2.07
SMC4-225ENST00000497203 TRIP13Q15645 432 aaPredicted RBP2.13□□□□□ -2.07
SMC4-225ENST00000497203 CLEC18BQ6UXF7 455 aa2.13□□□□□ -2.07
SMC4-225ENST00000497203 TMEM136Q6ZRR5 245 aa2.13□□□□□ -2.07
SMC4-225ENST00000497203 COPS6Q7L5N1 327 aa2.13□□□□□ -2.07
SMC4-225ENST00000497203 TCAIMQ8N3R3 496 aa2.13□□□□□ -2.07
SMC4-225ENST00000497203 CDRT4Q8N9R6 151 aa2.13□□□□□ -2.07
SMC4-225ENST00000497203 OR6K3Q8NGY3 331 aa2.13□□□□□ -2.07
SMC4-225ENST00000497203 SCGB1C1Q8TD33 95 aa2.13□□□□□ -2.07
SMC4-225ENST00000497203 TNFRSF14Q92956 283 aa2.13□□□□□ -2.07
SMC4-225ENST00000497203 TMIGD2Q96BF3 282 aa2.13□□□□□ -2.07
SMC4-225ENST00000497203 ZMYND19Q96E35 227 aaPredicted RBP2.13□□□□□ -2.07
SMC4-225ENST00000497203 ZBED3Q96IU2 234 aaPredicted RBP2.13□□□□□ -2.07
SMC4-225ENST00000497203 ZNF75AQ96N20 296 aa2.13□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms