RNA–Protein interactions for RNA: ENST00000496298.5

USP40-217, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 665 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-217ENST00000496298 MRPL28Q13084 256 aaKnown RBP15.76■□□□□ 0.11
USP40-217ENST00000496298 LPCAT4Q643R3 524 aa15.76■□□□□ 0.11
USP40-217ENST00000496298 DHRS7BQ6IAN0 325 aaPredicted RBP15.76■□□□□ 0.11
USP40-217ENST00000496298 CRIP3Q6Q6R5 217 aa15.76■□□□□ 0.11
USP40-217ENST00000496298 GDPD3Q7L5L3 318 aa15.76■□□□□ 0.11
USP40-217ENST00000496298 APH1BQ8WW43 257 aa15.76■□□□□ 0.11
USP40-217ENST00000496298 SSX3Q99909 188 aa15.76■□□□□ 0.11
USP40-217ENST00000496298 JAM3Q9BX67 310 aa15.76■□□□□ 0.11
USP40-217ENST00000496298 AMBNQ9NP70 447 aa15.76■□□□□ 0.11
USP40-217ENST00000496298 RBFOX1Q9NWB1 397 aaKnown RBP15.76■□□□□ 0.11
USP40-217ENST00000496298 IL36RNQ9UBH0 155 aa15.76■□□□□ 0.11
USP40-217ENST00000496298 RPL36Q9Y3U8 105 aaKnown RBP15.76■□□□□ 0.11
USP40-217ENST00000496298 CMYA5Q8N3K9 4069 aa15.76■□□□□ 0.11
USP40-217ENST00000496298 H3BUX3 64 aa15.75■□□□□ 0.11
USP40-217ENST00000496298 INMTO95050 263 aa15.75■□□□□ 0.11
USP40-217ENST00000496298 PIPP12273 146 aaPredicted RBP15.75■□□□□ 0.11
USP40-217ENST00000496298 BCL3P20749 454 aa15.75■□□□□ 0.11
USP40-217ENST00000496298 KLHL22Q53GT1 634 aa15.75■□□□□ 0.11
USP40-217ENST00000496298 SPIN3Q5JUX0 258 aa15.75■□□□□ 0.11
USP40-217ENST00000496298 TREML4Q6UXN2 200 aa15.75■□□□□ 0.11
USP40-217ENST00000496298 TCF23Q7RTU1 214 aa15.75■□□□□ 0.11
USP40-217ENST00000496298 ZNF676Q8N7Q3 588 aa15.75■□□□□ 0.11
USP40-217ENST00000496298 OR52N4Q8NGI2 321 aa15.75■□□□□ 0.11
USP40-217ENST00000496298 OR52I1Q8NGK6 324 aa15.75■□□□□ 0.11
USP40-217ENST00000496298 OR13C3Q8NGS6 347 aa15.75■□□□□ 0.11
USP40-217ENST00000496298 HAVCR2Q8TDQ0 301 aa15.75■□□□□ 0.11
USP40-217ENST00000496298 RHOFQ9HBH0 211 aa15.75■□□□□ 0.11
USP40-217ENST00000496298 HMG20AQ9NP66 347 aa15.75■□□□□ 0.11
USP40-217ENST00000496298 IGKV1-12A0A0C4DH73 117 aa15.74■□□□□ 0.11
USP40-217ENST00000496298 E9PI62 339 aa15.74■□□□□ 0.11
USP40-217ENST00000496298 PSPNO60542 156 aa15.74■□□□□ 0.11
USP40-217ENST00000496298 WBP4O75554 376 aaKnown RBP15.74■□□□□ 0.11
USP40-217ENST00000496298 KDM4BO94953 1096 aa15.74■□□□□ 0.11
USP40-217ENST00000496298 ZFPL1O95159 310 aa15.74■□□□□ 0.11
USP40-217ENST00000496298 IGKV1D-12P01611 117 aa15.74■□□□□ 0.11
USP40-217ENST00000496298 POU3F4P49335 361 aa15.74■□□□□ 0.11
USP40-217ENST00000496298 BMXP51813 675 aa15.74■□□□□ 0.11
USP40-217ENST00000496298 EDDM3BP56851 147 aa15.74■□□□□ 0.11
USP40-217ENST00000496298 LRRC75BQ2VPJ9 315 aa15.74■□□□□ 0.11
USP40-217ENST00000496298 RNF144BQ7Z419 303 aa15.74■□□□□ 0.11
USP40-217ENST00000496298 SAXO1Q8IYX7 474 aa15.74■□□□□ 0.11
USP40-217ENST00000496298 PARP16Q8N5Y8 322 aa15.74■□□□□ 0.11
USP40-217ENST00000496298 OR11H6Q8NGC7 330 aa15.74■□□□□ 0.11
USP40-217ENST00000496298 ZCCHC4Q9H5U6 513 aa15.74■□□□□ 0.11
USP40-217ENST00000496298 FGF20Q9NP95 211 aaPredicted RBP15.74■□□□□ 0.11
USP40-217ENST00000496298 SMPD3Q9NY59 655 aaPredicted RBP15.74■□□□□ 0.11
USP40-217ENST00000496298 TMEM212A6NML5 194 aa15.73■□□□□ 0.11
USP40-217ENST00000496298 VGLL3A8MV65 326 aa15.73■□□□□ 0.11
USP40-217ENST00000496298 ODF3BA8MYP8 253 aa15.73■□□□□ 0.11
USP40-217ENST00000496298 LIMS3P0CW19 117 aa15.73■□□□□ 0.11
USP40-217ENST00000496298 LIMS4P0CW20 117 aa15.73■□□□□ 0.11
USP40-217ENST00000496298 IGHV1-8P0DP01 117 aa15.73■□□□□ 0.11
USP40-217ENST00000496298 COX7A1P24310 79 aa15.73■□□□□ 0.11
USP40-217ENST00000496298 LMO1P25800 156 aa15.73■□□□□ 0.11
USP40-217ENST00000496298 PEX2P28328 305 aa15.73■□□□□ 0.11
USP40-217ENST00000496298 ERP29P30040 261 aaKnown RBP15.73■□□□□ 0.11
USP40-217ENST00000496298 LGALS4P56470 323 aa15.73■□□□□ 0.11
USP40-217ENST00000496298 ZSCAN26Q16670 478 aa15.73■□□□□ 0.11
USP40-217ENST00000496298 BRICD5Q6PL45 260 aa15.73■□□□□ 0.11
USP40-217ENST00000496298 ZNF782Q6ZMW2 699 aaPredicted RBP15.73■□□□□ 0.11
USP40-217ENST00000496298 OR13C9Q8NGT0 318 aa15.73■□□□□ 0.11
USP40-217ENST00000496298 PIFOQ8TCI5 191 aa15.73■□□□□ 0.11
USP40-217ENST00000496298 FBLN5Q9UBX5 448 aa15.73■□□□□ 0.11
USP40-217ENST00000496298 LINC00312Q9Y6C7 94 aa15.73■□□□□ 0.11
USP40-217ENST00000496298 hADV38S2A0JD32 116 aa15.72■□□□□ 0.11
USP40-217ENST00000496298 MGST3O14880 152 aa15.72■□□□□ 0.11
USP40-217ENST00000496298 BAG2O95816 211 aa15.72■□□□□ 0.11
USP40-217ENST00000496298 CCDC159P0C7I6 412 aa15.72■□□□□ 0.11
USP40-217ENST00000496298 PRKACAP17612 351 aa15.72■□□□□ 0.11
USP40-217ENST00000496298 DUSP1P28562 367 aa15.72■□□□□ 0.11
USP40-217ENST00000496298 GBX2P52951 348 aaPredicted RBP15.72■□□□□ 0.11
USP40-217ENST00000496298 GRK1Q15835 563 aa15.72■□□□□ 0.11
USP40-217ENST00000496298 ZNF626Q68DY1 528 aa15.72■□□□□ 0.11
USP40-217ENST00000496298 SLC35E4Q6ICL7 350 aa15.72■□□□□ 0.11
USP40-217ENST00000496298 SERPINA12Q8IW75 414 aa15.72■□□□□ 0.11
USP40-217ENST00000496298 OR4S1Q8NGB4 309 aa15.72■□□□□ 0.11
USP40-217ENST00000496298 OR5D14Q8NGL3 314 aa15.72■□□□□ 0.11
USP40-217ENST00000496298 OR13D1Q8NGV5 346 aa15.72■□□□□ 0.11
USP40-217ENST00000496298 OR5AK2Q8NH90 309 aa15.72■□□□□ 0.11
USP40-217ENST00000496298 ZNF714Q96N38 554 aa15.72■□□□□ 0.11
USP40-217ENST00000496298 COMMD4Q9H0A8 199 aa15.72■□□□□ 0.11
USP40-217ENST00000496298 PPA2Q9H2U2 334 aa15.72■□□□□ 0.11
USP40-217ENST00000496298 NEK6Q9HC98 313 aa15.72■□□□□ 0.11
USP40-217ENST00000496298 GLS2Q9UI32 602 aa15.72■□□□□ 0.11
USP40-217ENST00000496298 TBL2Q9Y4P3 447 aaKnown RBP15.72■□□□□ 0.11
USP40-217ENST00000496298 WNK1Q9H4A3 2382 aa15.72■□□□□ 0.11
USP40-217ENST00000496298 MEGF11A6BM72 1044 aa15.71■□□□□ 0.11
USP40-217ENST00000496298 SH2D1BO14796 132 aa15.71■□□□□ 0.11
USP40-217ENST00000496298 GABRR1P24046 479 aa15.71■□□□□ 0.11
USP40-217ENST00000496298 OR3A1P47881 315 aa15.71■□□□□ 0.11
USP40-217ENST00000496298 SMN1Q16637 294 aaKnown RBP15.71■□□□□ 0.11
USP40-217ENST00000496298 ZNF529Q6P280 563 aa15.71■□□□□ 0.11
USP40-217ENST00000496298 LHFPL4Q7Z7J7 247 aa15.71■□□□□ 0.11
USP40-217ENST00000496298 DYNAPQ8N1N2 210 aa15.71■□□□□ 0.11
USP40-217ENST00000496298 ZNF555Q8NEP9 628 aa15.71■□□□□ 0.11
USP40-217ENST00000496298 PPP1R35Q8TAP8 253 aa15.71■□□□□ 0.11
USP40-217ENST00000496298 RFT1Q96AA3 541 aa15.71■□□□□ 0.11
USP40-217ENST00000496298 SPACA5Q96QH8 159 aa15.71■□□□□ 0.11
USP40-217ENST00000496298 PDCD1LG2Q9BQ51 273 aa15.71■□□□□ 0.11
USP40-217ENST00000496298 KIAA2026Q5HYC2 2103 aa15.71■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms