RNA–Protein interactions for RNA: ENST00000494776.1

LIME1-209, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 391 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-209ENST00000494776 HAND1O96004 215 aa13.13□□□□□ -0.31
LIME1-209ENST00000494776 DUSP1P28562 367 aa13.13□□□□□ -0.31
LIME1-209ENST00000494776 BPIFB3P59826 476 aa13.13□□□□□ -0.31
LIME1-209ENST00000494776 RPL31P62899 125 aaKnown RBP13.13□□□□□ -0.31
LIME1-209ENST00000494776 SLC35A2P78381 396 aa13.13□□□□□ -0.31
LIME1-209ENST00000494776 SPHARQ15513 63 aa13.13□□□□□ -0.31
LIME1-209ENST00000494776 GDPD3Q7L5L3 318 aa13.13□□□□□ -0.31
LIME1-209ENST00000494776 PDZD9Q8IXQ8 264 aa13.13□□□□□ -0.31
LIME1-209ENST00000494776 SIGLECL1Q8N7X8 197 aa13.13□□□□□ -0.31
LIME1-209ENST00000494776 ZSCAN4Q8NAM6 433 aaPredicted RBP13.13□□□□□ -0.31
LIME1-209ENST00000494776 OR4M1Q8NGD0 313 aa13.13□□□□□ -0.31
LIME1-209ENST00000494776 OR52N4Q8NGI2 321 aa13.13□□□□□ -0.31
LIME1-209ENST00000494776 OR5D13Q8NGL4 314 aa13.13□□□□□ -0.31
LIME1-209ENST00000494776 TBC1D15Q8TC07 691 aa13.13□□□□□ -0.31
LIME1-209ENST00000494776 TNFAIP8L1Q8WVP5 186 aa13.13□□□□□ -0.31
LIME1-209ENST00000494776 SGCDQ92629 289 aa13.13□□□□□ -0.31
LIME1-209ENST00000494776 Q9H521 79 aa13.13□□□□□ -0.31
LIME1-209ENST00000494776 RHOFQ9HBH0 211 aa13.13□□□□□ -0.31
LIME1-209ENST00000494776 HMG20AQ9NP66 347 aa13.13□□□□□ -0.31
LIME1-209ENST00000494776 TMEM138Q9NPI0 162 aa13.13□□□□□ -0.31
LIME1-209ENST00000494776 PAK1IP1Q9NWT1 392 aaPredicted RBP13.13□□□□□ -0.31
LIME1-209ENST00000494776 IL36RNQ9UBH0 155 aa13.13□□□□□ -0.31
LIME1-209ENST00000494776 GSTK1Q9Y2Q3 226 aa13.13□□□□□ -0.31
LIME1-209ENST00000494776 IGKV1-12A0A0C4DH73 117 aa13.12□□□□□ -0.31
LIME1-209ENST00000494776 CENPVL3A0A0U1RRI6 287 aa13.12□□□□□ -0.31
LIME1-209ENST00000494776 A0A1W2PPK0 400 aa13.12□□□□□ -0.31
LIME1-209ENST00000494776 TRIM77I1YAP6 450 aa13.12□□□□□ -0.31
LIME1-209ENST00000494776 K7N7A8 449 aa13.12□□□□□ -0.31
LIME1-209ENST00000494776 SH2D1BO14796 132 aa13.12□□□□□ -0.31
LIME1-209ENST00000494776 IGKV1D-12P01611 117 aa13.12□□□□□ -0.31
LIME1-209ENST00000494776 CD1AP06126 327 aa13.12□□□□□ -0.31
LIME1-209ENST00000494776 GABRR1P24046 479 aa13.12□□□□□ -0.31
LIME1-209ENST00000494776 CRHBPP24387 322 aa13.12□□□□□ -0.31
LIME1-209ENST00000494776 EEF1B2P24534 225 aaKnown RBP13.12□□□□□ -0.31
LIME1-209ENST00000494776 BDKRB2P30411 391 aa13.12□□□□□ -0.31
LIME1-209ENST00000494776 EDDM3BP56851 147 aa13.12□□□□□ -0.31
LIME1-209ENST00000494776 HILS1P60008 231 aa13.12□□□□□ -0.31
LIME1-209ENST00000494776 BDH1Q02338 343 aa13.12□□□□□ -0.31
LIME1-209ENST00000494776 KRTAP24-1Q3LI83 254 aa13.12□□□□□ -0.31
LIME1-209ENST00000494776 SPIN3Q5JUX0 258 aa13.12□□□□□ -0.31
LIME1-209ENST00000494776 RBM48Q5RL73 367 aaKnown RBP13.12□□□□□ -0.31
LIME1-209ENST00000494776 DDI2Q5TDH0 399 aa13.12□□□□□ -0.31
LIME1-209ENST00000494776 ZNF529Q6P280 563 aa13.12□□□□□ -0.31
LIME1-209ENST00000494776 ORAI1Q96D31 301 aa13.12□□□□□ -0.31
LIME1-209ENST00000494776 SNX22Q96L94 193 aa13.12□□□□□ -0.31
LIME1-209ENST00000494776 OR14A2Q96R54 314 aa13.12□□□□□ -0.31
LIME1-209ENST00000494776 DUSP21Q9H596 190 aa13.12□□□□□ -0.31
LIME1-209ENST00000494776 EXOSC4Q9NPD3 245 aaKnown RBP13.12□□□□□ -0.31
LIME1-209ENST00000494776 SIRT7Q9NRC8 400 aa13.12□□□□□ -0.31
LIME1-209ENST00000494776 C19orf12Q9NSK7 152 aa13.12□□□□□ -0.31
LIME1-209ENST00000494776 BLOC1S6Q9UL45 172 aa13.12□□□□□ -0.31
LIME1-209ENST00000494776 MXRA5Q9NR99 2828 aa13.12□□□□□ -0.31
LIME1-209ENST00000494776 M0R1W7 72 aa13.11□□□□□ -0.31
LIME1-209ENST00000494776 GABRPO00591 440 aa13.11□□□□□ -0.31
LIME1-209ENST00000494776 ALDOBP05062 364 aa13.11□□□□□ -0.31
LIME1-209ENST00000494776 MAPK3P27361 379 aaPredicted RBP13.11□□□□□ -0.31
LIME1-209ENST00000494776 ZNF93P35789 620 aaPredicted RBP13.11□□□□□ -0.31
LIME1-209ENST00000494776 TGFBR2P37173 567 aa13.11□□□□□ -0.31
LIME1-209ENST00000494776 BMXP51813 675 aa13.11□□□□□ -0.31
LIME1-209ENST00000494776 ZP1P60852 638 aa13.11□□□□□ -0.31
LIME1-209ENST00000494776 RPS11P62280 158 aaKnown RBP eCLIP13.11□□□□□ -0.31
LIME1-209ENST00000494776 SCN1BQ07699 218 aa13.11□□□□□ -0.31
LIME1-209ENST00000494776 ACSM1Q08AH1 577 aa13.11□□□□□ -0.31
LIME1-209ENST00000494776 BAMBIQ13145 260 aa13.11□□□□□ -0.31
LIME1-209ENST00000494776 ZNF146Q15072 292 aa13.11□□□□□ -0.31
LIME1-209ENST00000494776 RSU1Q15404 277 aa13.11□□□□□ -0.31
LIME1-209ENST00000494776 RUSC1-AS1Q66K80 236 aa13.11□□□□□ -0.31
LIME1-209ENST00000494776 ASPHD2Q6ICH7 369 aa13.11□□□□□ -0.31
LIME1-209ENST00000494776 C9orf139Q6ZV77 190 aa13.11□□□□□ -0.31
LIME1-209ENST00000494776 PPP1R35Q8TAP8 253 aa13.11□□□□□ -0.31
LIME1-209ENST00000494776 THRSPQ92748 146 aa13.11□□□□□ -0.31
LIME1-209ENST00000494776 ZDHHC16Q969W1 377 aa13.11□□□□□ -0.31
LIME1-209ENST00000494776 OR5M11Q96RB7 305 aa13.11□□□□□ -0.31
LIME1-209ENST00000494776 S100A13Q99584 98 aa13.11□□□□□ -0.31
LIME1-209ENST00000494776 ZNF184Q99676 751 aaPredicted RBP13.11□□□□□ -0.31
LIME1-209ENST00000494776 METTL8Q9H825 291 aaKnown RBP13.11□□□□□ -0.31
LIME1-209ENST00000494776 ING4Q9UNL4 249 aa13.11□□□□□ -0.31
LIME1-209ENST00000494776 SOX21Q9Y651 276 aaPredicted RBP13.11□□□□□ -0.31
LIME1-209ENST00000494776 IGHV1-69DA0A0B4J2H0 117 aa13.1□□□□□ -0.31
LIME1-209ENST00000494776 hCG_1809904A0A1W2PP81 198 aa13.1□□□□□ -0.31
LIME1-209ENST00000494776 A0A1W2PPE2 198 aa13.1□□□□□ -0.31
LIME1-209ENST00000494776 A0A1W2PR64 198 aa13.1□□□□□ -0.31
LIME1-209ENST00000494776 A0A1W2PRV1 198 aa13.1□□□□□ -0.31
LIME1-209ENST00000494776 SIRPB1O00241 398 aa13.1□□□□□ -0.31
LIME1-209ENST00000494776 IGHV1-69P01742 117 aa13.1□□□□□ -0.31
LIME1-209ENST00000494776 HSMCR30P0CW71 290 aa13.1□□□□□ -0.31
LIME1-209ENST00000494776 ZNF44P15621 663 aa13.1□□□□□ -0.31
LIME1-209ENST00000494776 MTNR1BP49286 362 aa13.1□□□□□ -0.31
LIME1-209ENST00000494776 GUCA2AQ02747 115 aa13.1□□□□□ -0.31
LIME1-209ENST00000494776 EDDM3AQ14507 147 aa13.1□□□□□ -0.31
LIME1-209ENST00000494776 GRK1Q15835 563 aa13.1□□□□□ -0.31
LIME1-209ENST00000494776 TMEM200BQ69YZ2 307 aa13.1□□□□□ -0.31
LIME1-209ENST00000494776 CRIP3Q6Q6R5 217 aa13.1□□□□□ -0.31
LIME1-209ENST00000494776 C1orf122Q6ZSJ8 110 aa13.1□□□□□ -0.31
LIME1-209ENST00000494776 PRSS48Q7RTY5 328 aa13.1□□□□□ -0.31
LIME1-209ENST00000494776 OR8H2Q8N162 312 aa13.1□□□□□ -0.31
LIME1-209ENST00000494776 MS4A15Q8N5U1 240 aa13.1□□□□□ -0.31
LIME1-209ENST00000494776 Q8N7P7 452 aa13.1□□□□□ -0.31
LIME1-209ENST00000494776 PXT1Q8NFP0 134 aa13.1□□□□□ -0.31
LIME1-209ENST00000494776 NR1H4Q96RI1 486 aaPredicted RBP13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms