RNA–Protein interactions for RNA: ENST00000489108.1

USP48-210, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 443 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-210ENST00000489108 LAMP5Q9UJQ1 280 aa12.72□□□□□ -0.37
USP48-210ENST00000489108 UBE2J1Q9Y385 318 aaPredicted RBP12.72□□□□□ -0.37
USP48-210ENST00000489108 CSMD3Q7Z407 3707 aa12.71□□□□□ -0.37
USP48-210ENST00000489108 STARD9Q9P2P6 4700 aa12.71□□□□□ -0.37
USP48-210ENST00000489108 HYDINQ4G0P3 5121 aa12.71□□□□□ -0.37
USP48-210ENST00000489108 FAM230AA0A1W2PPH8 454 aa12.71□□□□□ -0.37
USP48-210ENST00000489108 FAM90A18PA6NE21 464 aa12.71□□□□□ -0.37
USP48-210ENST00000489108 FAM90A16PA6NEW6 464 aa12.71□□□□□ -0.37
USP48-210ENST00000489108 FAM90A20PA6NIJ5 464 aa12.71□□□□□ -0.37
USP48-210ENST00000489108 FAM90A9PA6NNJ1 464 aa12.71□□□□□ -0.37
USP48-210ENST00000489108 FAM90A12PA8MX19 464 aa12.71□□□□□ -0.37
USP48-210ENST00000489108 FAM90A5PA8MXJ8 464 aa12.71□□□□□ -0.37
USP48-210ENST00000489108 PRR23D1E9PI22 279 aaPredicted RBP12.71□□□□□ -0.37
USP48-210ENST00000489108 TTRP02766 147 aa12.71□□□□□ -0.37
USP48-210ENST00000489108 RPLP1P05386 114 aaKnown RBP12.71□□□□□ -0.37
USP48-210ENST00000489108 FAM90A15PP0C7V4 464 aa12.71□□□□□ -0.37
USP48-210ENST00000489108 FAM90A13PP0C7W8 464 aa12.71□□□□□ -0.37
USP48-210ENST00000489108 FAM90A14PP0C7W9 464 aa12.71□□□□□ -0.37
USP48-210ENST00000489108 FAM90A24PP0C7X0 464 aa12.71□□□□□ -0.37
USP48-210ENST00000489108 PRR23D2P0DMB1 279 aaPredicted RBP12.71□□□□□ -0.37
USP48-210ENST00000489108 CDK2P24941 298 aa12.71□□□□□ -0.37
USP48-210ENST00000489108 CEACAM3P40198 252 aa12.71□□□□□ -0.37
USP48-210ENST00000489108 MNDAP41218 407 aa12.71□□□□□ -0.37
USP48-210ENST00000489108 KIR2DS1Q14954 304 aa12.71□□□□□ -0.37
USP48-210ENST00000489108 C5orf56Q8N8D9 126 aa12.71□□□□□ -0.37
USP48-210ENST00000489108 SLAMF9Q96A28 289 aa12.71□□□□□ -0.37
USP48-210ENST00000489108 DGCR6LQ9BY27 220 aa12.71□□□□□ -0.37
USP48-210ENST00000489108 IL36RNQ9UBH0 155 aa12.71□□□□□ -0.37
USP48-210ENST00000489108 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.71□□□□□ -0.37
USP48-210ENST00000489108 LINC01548A6NM66 108 aa12.7□□□□□ -0.38
USP48-210ENST00000489108 PRR32B1ATL7 298 aa12.7□□□□□ -0.38
USP48-210ENST00000489108 TOR1AO14656 332 aa12.7□□□□□ -0.38
USP48-210ENST00000489108 HAND1O96004 215 aa12.7□□□□□ -0.38
USP48-210ENST00000489108 MFGE8Q08431 387 aaPredicted RBP12.7□□□□□ -0.38
USP48-210ENST00000489108 HLA-DRB5Q30154 266 aa12.7□□□□□ -0.38
USP48-210ENST00000489108 ZNF260Q3ZCT1 412 aa12.7□□□□□ -0.38
USP48-210ENST00000489108 SLX4IPQ5VYV7 408 aa12.7□□□□□ -0.38
USP48-210ENST00000489108 DEGS2Q6QHC5 323 aa12.7□□□□□ -0.38
USP48-210ENST00000489108 HEPN1Q6WQI6 88 aa12.7□□□□□ -0.38
USP48-210ENST00000489108 THNSL2Q86YJ6 484 aa12.7□□□□□ -0.38
USP48-210ENST00000489108 STPG2Q8N412 459 aa12.7□□□□□ -0.38
USP48-210ENST00000489108 OR8U1Q8NH10 309 aa12.7□□□□□ -0.38
USP48-210ENST00000489108 TEX47Q8TBZ9 253 aa12.7□□□□□ -0.38
USP48-210ENST00000489108 CREB3L1Q96BA8 519 aa12.7□□□□□ -0.38
USP48-210ENST00000489108 CITED4Q96RK1 184 aa12.7□□□□□ -0.38
USP48-210ENST00000489108 CADM1Q9BY67 442 aaKnown RBP12.7□□□□□ -0.38
USP48-210ENST00000489108 MROQ9BYG7 248 aa12.7□□□□□ -0.38
USP48-210ENST00000489108 NUFIP1Q9UHK0 495 aaKnown RBP12.7□□□□□ -0.38
USP48-210ENST00000489108 V9GYS6 101 aa12.7□□□□□ -0.38
USP48-210ENST00000489108 MGST3O14880 152 aa12.69□□□□□ -0.38
USP48-210ENST00000489108 ARPC2O15144 300 aa12.69□□□□□ -0.38
USP48-210ENST00000489108 CCDC22O60826 627 aa12.69□□□□□ -0.38
USP48-210ENST00000489108 HSD17B1P14061 328 aa12.69□□□□□ -0.38
USP48-210ENST00000489108 DUSP1P28562 367 aa12.69□□□□□ -0.38
USP48-210ENST00000489108 CD34P28906 385 aa12.69□□□□□ -0.38
USP48-210ENST00000489108 PRRX1P54821 245 aa12.69□□□□□ -0.38
USP48-210ENST00000489108 RBM39Q14498 530 aaKnown RBP12.69□□□□□ -0.38
USP48-210ENST00000489108 HNF4GQ14541 408 aa12.69□□□□□ -0.38
USP48-210ENST00000489108 MICAQ29983 383 aa12.69□□□□□ -0.38
USP48-210ENST00000489108 UTF1Q5T230 341 aa12.69□□□□□ -0.38
USP48-210ENST00000489108 CCDC144NLQ6NUI1 221 aa12.69□□□□□ -0.38
USP48-210ENST00000489108 TEX38Q6PEX7 206 aa12.69□□□□□ -0.38
USP48-210ENST00000489108 SLC35E3Q7Z769 313 aa12.69□□□□□ -0.38
USP48-210ENST00000489108 CPOQ8IVL8 374 aa12.69□□□□□ -0.38
USP48-210ENST00000489108 BBS1Q8NFJ9 593 aa12.69□□□□□ -0.38
USP48-210ENST00000489108 OR14K1Q8NGZ2 314 aa12.69□□□□□ -0.38
USP48-210ENST00000489108 NIPSNAP1Q9BPW8 284 aa12.69□□□□□ -0.38
USP48-210ENST00000489108 GAL3ST2Q9H3Q3 398 aa12.69□□□□□ -0.38
USP48-210ENST00000489108 ZMAT4Q9H898 229 aa12.69□□□□□ -0.38
USP48-210ENST00000489108 U3KQV3 271 aa12.69□□□□□ -0.38
USP48-210ENST00000489108 IGKV1-27A0A075B6S5 117 aa12.68□□□□□ -0.38
USP48-210ENST00000489108 A0A1B0GTI1 187 aa12.68□□□□□ -0.38
USP48-210ENST00000489108 OOSP1A8MZH6 123 aa12.68□□□□□ -0.38
USP48-210ENST00000489108 H3BN98 237 aa12.68□□□□□ -0.38
USP48-210ENST00000489108 PRODHO43272 600 aa12.68□□□□□ -0.38
USP48-210ENST00000489108 IGHG2P01859 326 aa12.68□□□□□ -0.38
USP48-210ENST00000489108 ERP29P30040 261 aaKnown RBP12.68□□□□□ -0.38
USP48-210ENST00000489108 OR3A1P47881 315 aa12.68□□□□□ -0.38
USP48-210ENST00000489108 P2RX3P56373 397 aa12.68□□□□□ -0.38
USP48-210ENST00000489108 RPS7P62081 194 aaKnown RBP12.68□□□□□ -0.38
USP48-210ENST00000489108 ZNF91Q05481 1191 aa12.68□□□□□ -0.38
USP48-210ENST00000489108 KPNB1Q14974 876 aaKnown RBP12.68□□□□□ -0.38
USP48-210ENST00000489108 PNLIPRP3Q17RR3 467 aa12.68□□□□□ -0.38
USP48-210ENST00000489108 FOXRED2Q8IWF2 684 aa12.68□□□□□ -0.38
USP48-210ENST00000489108 ZNF679Q8IYX0 411 aa12.68□□□□□ -0.38
USP48-210ENST00000489108 OR56B4Q8NH76 319 aa12.68□□□□□ -0.38
USP48-210ENST00000489108 EMG1Q92979 244 aaKnown RBP12.68□□□□□ -0.38
USP48-210ENST00000489108 TTTY10Q9BZA0 68 aa12.68□□□□□ -0.38
USP48-210ENST00000489108 SEBOXQ9HB31 216 aaPredicted RBP12.68□□□□□ -0.38
USP48-210ENST00000489108 NKX1-2Q9UD57 310 aaPredicted RBP12.68□□□□□ -0.38
USP48-210ENST00000489108 GTF2A1LQ9UNN4 478 aa12.68□□□□□ -0.38
USP48-210ENST00000489108 SLC7A11Q9UPY5 501 aa12.68□□□□□ -0.38
USP48-210ENST00000489108 TRGV10A0A0A0MS01 117 aa12.67□□□□□ -0.38
USP48-210ENST00000489108 ZNF254O75437 659 aa12.67□□□□□ -0.38
USP48-210ENST00000489108 FRMD6-AS1P0C7T7 363 aa12.67□□□□□ -0.38
USP48-210ENST00000489108 CALCBP10092 127 aa12.67□□□□□ -0.38
USP48-210ENST00000489108 TMEM11P17152 192 aa12.67□□□□□ -0.38
USP48-210ENST00000489108 CDX1P47902 265 aaPredicted RBP12.67□□□□□ -0.38
USP48-210ENST00000489108 RIDAP52758 137 aaKnown RBP12.67□□□□□ -0.38
USP48-210ENST00000489108 ROM1Q03395 351 aa12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms