RNA–Protein interactions for RNA: ENST00000488017.1

SMC4-220, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 4

Gene SMC4, Length 592 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-220ENST00000488017 SBNO1A3KN83 1393 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 ROCK2O75116 1388 aaKnown RBP0.89□□□□□ -2.27
SMC4-220ENST00000488017 ROCK1Q13464 1354 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 IGKV1OR2-108A0A075B7D4 117 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 TRAV8-4A0A0B4J246 113 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 C1orf232A0A0U1RR37 186 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 GOLGA8IPA6NC78 632 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 NCF1BA6NI72 391 aaPredicted RBP0.89□□□□□ -2.27
SMC4-220ENST00000488017 IQCF5A8MTL0 148 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 NCF1CA8MVU1 366 aaPredicted RBP0.89□□□□□ -2.27
SMC4-220ENST00000488017 H0YIV9 168 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 GOLGA8MH3BSY2 632 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 J3QT63 122 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 DFFAO00273 331 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 GPR171O14626 319 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 TRAPPC3O43617 180 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 SPOPO43791 374 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 NDUFS5O43920 106 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 CIAO1O76071 339 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 KCNK2O95069 426 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 TTC4O95801 387 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 P01737 135 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 HLA-DRAP01903 254 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 SNRPAP09012 282 aaKnown RBP0.89□□□□□ -2.27
SMC4-220ENST00000488017 TFPTP0C1Z6 253 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 COX5BP10606 129 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 PMCHP20382 165 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 MSNP26038 577 aaKnown RBP0.89□□□□□ -2.27
SMC4-220ENST00000488017 GABRR2P28476 465 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 TGFBR2P37173 567 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 MAGEA1P43355 309 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 PSMD8P48556 350 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 PSMD4P55036 377 aaKnown RBP0.89□□□□□ -2.27
SMC4-220ENST00000488017 CLDN6P56747 220 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 CLDN8P56748 225 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 KLF3P57682 345 aaPredicted RBP0.89□□□□□ -2.27
SMC4-220ENST00000488017 CARD18P57730 90 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 TAS2R39P59534 338 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 RAB11AP62491 216 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 UBE2IP63279 158 aaKnown RBP0.89□□□□□ -2.27
SMC4-220ENST00000488017 LCN2P80188 198 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 ATP5G2Q06055 141 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 TNFRSF9Q07011 255 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 ADIGQ0VDE8 80 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 XRCC4Q13426 336 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 SYCP1Q15431 976 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 RAB11BQ15907 218 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 FBXL19-AS1Q494R0 122 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 HIKESHIQ53FT3 197 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 HSP90AA4PQ58FG1 418 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 PDZD11Q5EBL8 140 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 MLIPQ5VWP3 458 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 FAM104BQ5XKR9 115 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 ZFAND6Q6FIF0 208 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 APOBEC3HQ6NTF7 200 aaKnown RBP0.89□□□□□ -2.27
SMC4-220ENST00000488017 C8orf74Q6P047 294 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 EPGNQ6UW88 154 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 TMCO2Q7Z6W1 182 aaPredicted RBP0.89□□□□□ -2.27
SMC4-220ENST00000488017 VTCN1Q7Z7D3 282 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 PRNTQ86SH4 94 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 NATD1Q8N6N6 113 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 CCNYL1Q8N7R7 359 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 ZNF321PQ8N8H1 164 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 ZFP62Q8NB50 900 aaPredicted RBP0.89□□□□□ -2.27
SMC4-220ENST00000488017 OR10Z1Q8NGY1 313 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 OR8K3Q8NH51 312 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 MUC7Q8TAX7 377 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 TCP10LQ8TDR4 215 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 TMEM234Q8WY98 164 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 ING5Q8WYH8 240 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 OR8D1Q8WZ84 308 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 CCDC127Q96BQ5 260 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 C19orf60Q96EN9 201 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 CERS2Q96G23 380 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 STACQ99469 402 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 PKMYT1Q99640 499 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 TRIM4Q9C037 500 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 CHRNA10Q9GZZ6 450 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 PORCNQ9H237 461 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 DUSP21Q9H596 190 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 SPACA1Q9HBV2 294 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 FAM60AQ9NP50 221 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 TMEM38BQ9NVV0 291 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 ATPIF1Q9UII2 106 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 PSME2Q9UL46 239 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 ACOT9Q9Y305 439 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 ATG2AQ2TAZ0 1938 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 XIRP1Q702N8 1843 aaKnown RBP0.89□□□□□ -2.27
SMC4-220ENST00000488017 PHLPP1O60346 1717 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 KIAA1551Q9HCM1 1747 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 ARHGEF11O15085 1522 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 TOP2AP11388 1531 aaKnown RBP0.89□□□□□ -2.27
SMC4-220ENST00000488017 PRDM15P57071 1507 aaPredicted RBP0.89□□□□□ -2.27
SMC4-220ENST00000488017 LMTK2Q8IWU2 1503 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 DISP1Q96F81 1524 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 BCL9O00512 1426 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 CPSF1Q10570 1443 aaKnown RBP0.89□□□□□ -2.27
SMC4-220ENST00000488017 MYOM3Q5VTT5 1437 aa0.89□□□□□ -2.27
SMC4-220ENST00000488017 SBF1O95248 1867 aa0.88□□□□□ -2.27
SMC4-220ENST00000488017 CCDC88AQ3V6T2 1871 aa0.88□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms