RNA–Protein interactions for RNA: ENST00000486549.5

USP4-212, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 749 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-212ENST00000486549 BLOC1S6Q9UL45 172 aa12.18□□□□□ -0.46
USP4-212ENST00000486549 GABRPO00591 440 aa12.17□□□□□ -0.46
USP4-212ENST00000486549 KDM4BO94953 1096 aa12.17□□□□□ -0.46
USP4-212ENST00000486549 HAND1O96004 215 aa12.17□□□□□ -0.46
USP4-212ENST00000486549 HSMCR30P0CW71 290 aa12.17□□□□□ -0.46
USP4-212ENST00000486549 MMP9P14780 707 aa12.17□□□□□ -0.46
USP4-212ENST00000486549 MAP2K4P45985 399 aa12.17□□□□□ -0.46
USP4-212ENST00000486549 ZP1P60852 638 aa12.17□□□□□ -0.46
USP4-212ENST00000486549 ACSM1Q08AH1 577 aa12.17□□□□□ -0.46
USP4-212ENST00000486549 PRSS48Q7RTY5 328 aa12.17□□□□□ -0.46
USP4-212ENST00000486549 LY6G5BQ8NDX9 201 aa12.17□□□□□ -0.46
USP4-212ENST00000486549 ZNF418Q8TF45 676 aaPredicted RBP12.17□□□□□ -0.46
USP4-212ENST00000486549 ZFAND2BQ8WV99 257 aa12.17□□□□□ -0.46
USP4-212ENST00000486549 TBX15Q96SF7 602 aa12.17□□□□□ -0.46
USP4-212ENST00000486549 TMED9Q9BVK6 235 aa12.17□□□□□ -0.46
USP4-212ENST00000486549 C19orf24Q9BVV8 132 aa12.17□□□□□ -0.46
USP4-212ENST00000486549 MS4A7Q9GZW8 240 aaPredicted RBP12.17□□□□□ -0.46
USP4-212ENST00000486549 SIRPDQ9H106 197 aa12.17□□□□□ -0.46
USP4-212ENST00000486549 GSTK1Q9Y2Q3 226 aa12.17□□□□□ -0.46
USP4-212ENST00000486549 TRAV8-7A0A075B6U6 113 aa12.16□□□□□ -0.46
USP4-212ENST00000486549 MAGEA13PA6NCF6 341 aa12.16□□□□□ -0.46
USP4-212ENST00000486549 TK1P04183 234 aa12.16□□□□□ -0.46
USP4-212ENST00000486549 CD1AP06126 327 aa12.16□□□□□ -0.46
USP4-212ENST00000486549 CHRM2P08172 466 aa12.16□□□□□ -0.46
USP4-212ENST00000486549 FPR2P25090 351 aa12.16□□□□□ -0.46
USP4-212ENST00000486549 BDKRB2P30411 391 aa12.16□□□□□ -0.46
USP4-212ENST00000486549 OR3A4PP47883 348 aa12.16□□□□□ -0.46
USP4-212ENST00000486549 PRB3Q04118 309 aaPredicted RBP12.16□□□□□ -0.46
USP4-212ENST00000486549 KRTAP24-1Q3LI83 254 aa12.16□□□□□ -0.46
USP4-212ENST00000486549 GPR157Q5UAW9 335 aa12.16□□□□□ -0.46
USP4-212ENST00000486549 BRD3OSQ6XYD6 125 aa12.16□□□□□ -0.46
USP4-212ENST00000486549 VMO1Q7Z5L0 202 aa12.16□□□□□ -0.46
USP4-212ENST00000486549 PDZD9Q8IXQ8 264 aa12.16□□□□□ -0.46
USP4-212ENST00000486549 SAXO1Q8IYX7 474 aa12.16□□□□□ -0.46
USP4-212ENST00000486549 CMTM4Q8IZR5 234 aa12.16□□□□□ -0.46
USP4-212ENST00000486549 BCL6BQ8N143 479 aaPredicted RBP12.16□□□□□ -0.46
USP4-212ENST00000486549 OR4M1Q8NGD0 313 aa12.16□□□□□ -0.46
USP4-212ENST00000486549 OR10K1Q8NGX5 313 aa12.16□□□□□ -0.46
USP4-212ENST00000486549 C8orf46Q8TAG6 207 aa12.16□□□□□ -0.46
USP4-212ENST00000486549 UFD1Q92890 307 aa12.16□□□□□ -0.46
USP4-212ENST00000486549 LHX4Q969G2 390 aa12.16□□□□□ -0.46
USP4-212ENST00000486549 DERL3Q96Q80 235 aa12.16□□□□□ -0.46
USP4-212ENST00000486549 JMJD8Q96S16 334 aa12.16□□□□□ -0.46
USP4-212ENST00000486549 HMG20AQ9NP66 347 aa12.16□□□□□ -0.46
USP4-212ENST00000486549 TMEM138Q9NPI0 162 aa12.16□□□□□ -0.46
USP4-212ENST00000486549 SIRT7Q9NRC8 400 aa12.16□□□□□ -0.46
USP4-212ENST00000486549 C19orf12Q9NSK7 152 aa12.16□□□□□ -0.46
USP4-212ENST00000486549 SOX21Q9Y651 276 aaPredicted RBP12.16□□□□□ -0.46
USP4-212ENST00000486549 KPTNQ9Y664 436 aa12.16□□□□□ -0.46
USP4-212ENST00000486549 STAB1Q9NY15 2570 aa12.15□□□□□ -0.46
USP4-212ENST00000486549 TRBV5-7A0A0A0MS05 114 aa12.15□□□□□ -0.46
USP4-212ENST00000486549 TRBV23-1A0A0A0MS06 115 aa12.15□□□□□ -0.46
USP4-212ENST00000486549 K7N7A8 449 aa12.15□□□□□ -0.46
USP4-212ENST00000486549 SIRPB1O00241 398 aa12.15□□□□□ -0.46
USP4-212ENST00000486549 DENRO43583 198 aaKnown RBP12.15□□□□□ -0.46
USP4-212ENST00000486549 MAS1P04201 325 aa12.15□□□□□ -0.46
USP4-212ENST00000486549 ALDOBP05062 364 aa12.15□□□□□ -0.46
USP4-212ENST00000486549 IGFBP3P17936 291 aaPredicted RBP12.15□□□□□ -0.46
USP4-212ENST00000486549 FSTP19883 344 aa12.15□□□□□ -0.46
USP4-212ENST00000486549 GABRR1P24046 479 aa12.15□□□□□ -0.46
USP4-212ENST00000486549 ZNF93P35789 620 aaPredicted RBP12.15□□□□□ -0.46
USP4-212ENST00000486549 TGFBR2P37173 567 aa12.15□□□□□ -0.46
USP4-212ENST00000486549 DLX1P56177 255 aa12.15□□□□□ -0.46
USP4-212ENST00000486549 RPL31P62899 125 aaKnown RBP12.15□□□□□ -0.46
USP4-212ENST00000486549 INSL4Q14641 139 aa12.15□□□□□ -0.46
USP4-212ENST00000486549 SPIN3Q5JUX0 258 aa12.15□□□□□ -0.46
USP4-212ENST00000486549 LIPKQ5VXJ0 399 aa12.15□□□□□ -0.46
USP4-212ENST00000486549 RUSC1-AS1Q66K80 236 aa12.15□□□□□ -0.46
USP4-212ENST00000486549 KIR3DL3Q8N743 410 aa12.15□□□□□ -0.46
USP4-212ENST00000486549 ZSCAN4Q8NAM6 433 aaPredicted RBP12.15□□□□□ -0.46
USP4-212ENST00000486549 SUCNR1Q9BXA5 334 aa12.15□□□□□ -0.46
USP4-212ENST00000486549 CHST6Q9GZX3 395 aa12.15□□□□□ -0.46
USP4-212ENST00000486549 FAM234AQ9H0X4 552 aa12.15□□□□□ -0.46
USP4-212ENST00000486549 EXOSC4Q9NPD3 245 aaKnown RBP12.15□□□□□ -0.46
USP4-212ENST00000486549 NOX4Q9NPH5 578 aa12.15□□□□□ -0.46
USP4-212ENST00000486549 GLS2Q9UI32 602 aa12.15□□□□□ -0.46
USP4-212ENST00000486549 TMEM82A0PJX8 343 aa12.14□□□□□ -0.47
USP4-212ENST00000486549 MEX3AA1L020 520 aaKnown RBP12.14□□□□□ -0.47
USP4-212ENST00000486549 ZNF737O75373 536 aa12.14□□□□□ -0.47
USP4-212ENST00000486549 CDRT1O95170 752 aa12.14□□□□□ -0.47
USP4-212ENST00000486549 MAPK3P27361 379 aaPredicted RBP12.14□□□□□ -0.47
USP4-212ENST00000486549 EDDM3BP56851 147 aa12.14□□□□□ -0.47
USP4-212ENST00000486549 SCN1BQ07699 218 aa12.14□□□□□ -0.47
USP4-212ENST00000486549 EDDM3AQ14507 147 aa12.14□□□□□ -0.47
USP4-212ENST00000486549 PDCD1Q15116 288 aa12.14□□□□□ -0.47
USP4-212ENST00000486549 RSU1Q15404 277 aa12.14□□□□□ -0.47
USP4-212ENST00000486549 USP43Q70EL4 1123 aa12.14□□□□□ -0.47
USP4-212ENST00000486549 GDPD3Q7L5L3 318 aa12.14□□□□□ -0.47
USP4-212ENST00000486549 SIGLECL1Q8N7X8 197 aa12.14□□□□□ -0.47
USP4-212ENST00000486549 NR1H4Q96RI1 486 aaPredicted RBP12.14□□□□□ -0.47
USP4-212ENST00000486549 ING4Q9UNL4 249 aa12.14□□□□□ -0.47
USP4-212ENST00000486549 CENPVL3A0A0U1RRI6 287 aa12.13□□□□□ -0.47
USP4-212ENST00000486549 SH2D1BO14796 132 aa12.13□□□□□ -0.47
USP4-212ENST00000486549 PIN1P1O15428 100 aa12.13□□□□□ -0.47
USP4-212ENST00000486549 GPX5O75715 221 aa12.13□□□□□ -0.47
USP4-212ENST00000486549 VENTXO95231 258 aa12.13□□□□□ -0.47
USP4-212ENST00000486549 HTR3BO95264 441 aa12.13□□□□□ -0.47
USP4-212ENST00000486549 OR2H2O95918 312 aa12.13□□□□□ -0.47
USP4-212ENST00000486549 ZNF44P15621 663 aa12.13□□□□□ -0.47
USP4-212ENST00000486549 PTGFRP43088 359 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms