RNA–Protein interactions for RNA: ENST00000482217.1

VPS41-212, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 951 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-212ENST00000482217 ACOT6Q3I5F7 207 aaPredicted RBP3.3□□□□□ -1.88
VPS41-212ENST00000482217 TNFAIP8L2Q6P589 184 aaPredicted RBP3.3□□□□□ -1.88
VPS41-212ENST00000482217 OPN5Q6U736 354 aa3.3□□□□□ -1.88
VPS41-212ENST00000482217 TFAP2EQ6VUC0 442 aa3.3□□□□□ -1.88
VPS41-212ENST00000482217 NEGR1Q7Z3B1 354 aa3.3□□□□□ -1.88
VPS41-212ENST00000482217 NFE4Q86UQ8 179 aa3.3□□□□□ -1.88
VPS41-212ENST00000482217 PNKDQ8N490 385 aa3.3□□□□□ -1.88
VPS41-212ENST00000482217 ZNF491Q8N8L2 437 aa3.3□□□□□ -1.88
VPS41-212ENST00000482217 OR4M1Q8NGD0 313 aa3.3□□□□□ -1.88
VPS41-212ENST00000482217 OR52E4Q8NGH9 312 aa3.3□□□□□ -1.88
VPS41-212ENST00000482217 OR4S2Q8NH73 311 aa3.3□□□□□ -1.88
VPS41-212ENST00000482217 SKA2Q8WVK7 121 aaPredicted RBP3.3□□□□□ -1.88
VPS41-212ENST00000482217 TCTEX1D2Q8WW35 142 aa3.3□□□□□ -1.88
VPS41-212ENST00000482217 TMEM54Q969K7 222 aa3.3□□□□□ -1.88
VPS41-212ENST00000482217 APOBEC3DQ96AK3 386 aaPredicted RBP3.3□□□□□ -1.88
VPS41-212ENST00000482217 GPR21Q99679 349 aa3.3□□□□□ -1.88
VPS41-212ENST00000482217 RTBDNQ9BSG5 229 aaPredicted RBP3.3□□□□□ -1.88
VPS41-212ENST00000482217 MND1Q9BWT6 205 aa3.3□□□□□ -1.88
VPS41-212ENST00000482217 MROQ9BYG7 248 aa3.3□□□□□ -1.88
VPS41-212ENST00000482217 MAP1LC3BQ9GZQ8 125 aa3.3□□□□□ -1.88
VPS41-212ENST00000482217 RNASE7Q9H1E1 156 aaKnown RBP3.3□□□□□ -1.88
VPS41-212ENST00000482217 ZNF556Q9HAH1 456 aa3.3□□□□□ -1.88
VPS41-212ENST00000482217 KCNJ16Q9NPI9 418 aa3.3□□□□□ -1.88
VPS41-212ENST00000482217 NIT2Q9NQR4 276 aa3.3□□□□□ -1.88
VPS41-212ENST00000482217 C14orf105Q9NVL8 296 aa3.3□□□□□ -1.88
VPS41-212ENST00000482217 ARMCX1Q9P291 453 aa3.3□□□□□ -1.88
VPS41-212ENST00000482217 SLC2A6Q9UGQ3 507 aa3.3□□□□□ -1.88
VPS41-212ENST00000482217 ANXA10Q9UJ72 324 aa3.3□□□□□ -1.88
VPS41-212ENST00000482217 ZNF580Q9UK33 172 aa3.3□□□□□ -1.88
VPS41-212ENST00000482217 FER1L5A0AVI2 2057 aa3.3□□□□□ -1.88
VPS41-212ENST00000482217 HECW2Q9P2P5 1572 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 A2MP01023 1474 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 IGLV5-45A0A087WSX0 123 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 IGLV9-49A0A0B4J1Y8 123 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 FAM236DA0A1B0GTK5 79 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 FAM25AB3EWG3 89 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 FAM25CB3EWG5 89 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 FAM25GB3EWG6 89 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 TCP10L2B9ZVM9 353 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 G3V2T6 193 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 TRAPPC2LH3BP13 241 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 K7EQS6 105 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 FAAHO00519 579 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 TCF21O43680 179 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 TYROBPO43914 113 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 HPRT1P00492 218 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 S100A8P05109 93 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 FRMD6-AS1P0C7T7 363 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 GKN3PP0CG01 181 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 FAM236CP0DP71 79 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 HSD17B1P14061 328 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 GNB3P16520 340 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 GGT1P19440 569 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 ELK3P41970 407 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 GPM6AP51674 278 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 RIPPLY3P57055 190 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 RAB5BP61020 215 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 RND3P61587 244 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 SLC35A1P78382 337 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 RPL36AP83881 106 aaKnown RBP3.29□□□□□ -1.88
VPS41-212ENST00000482217 HPCAP84074 193 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 BAXQ07812 192 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 CEACAM16Q2WEN9 425 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 NSUN5P1Q3KNT7 163 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 ATAD3CQ5T2N8 411 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 FAM162BQ5T6X4 162 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 DCUN1D2Q6PH85 259 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 TMPPEQ6ZT21 453 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 STRADAQ7RTN6 431 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 OAFQ86UD1 273 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 CARM1Q86X55 608 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 SLC22A15Q8IZD6 547 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 ZCCHC24Q8N2G6 241 aaKnown RBP3.29□□□□□ -1.88
VPS41-212ENST00000482217 SVOPLQ8N434 492 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 OR52E2Q8NGJ4 325 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 OR1S1Q8NH92 325 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 PTX4Q96A99 478 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 GALMQ96C23 342 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 PAGE5Q96GU1 130 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 CDX2Q99626 313 aaPredicted RBP3.29□□□□□ -1.88
VPS41-212ENST00000482217 MCHR1Q99705 422 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 EFCAB11Q9BUY7 163 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 EMC6Q9BV81 110 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 TM2D1Q9BX74 207 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 TBL1XR1Q9BZK7 514 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 FAM96AQ9H5X1 160 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 RBM22Q9NW64 420 aaKnown RBP eCLIP3.29□□□□□ -1.88
VPS41-212ENST00000482217 MED29Q9NX70 200 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 TAS2R5Q9NYW4 299 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 COPZ2Q9P299 210 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 DHCR7Q9UBM7 475 aaKnown RBP3.29□□□□□ -1.88
VPS41-212ENST00000482217 VAX2Q9UIW0 290 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 ZNF257Q9Y2Q1 563 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 RFNGQ9Y644 331 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 ZNF780BQ9Y6R6 833 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 ADAMTSL1Q8N6G6 1762 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 MYO15BQ96JP2 1530 aa3.29□□□□□ -1.88
VPS41-212ENST00000482217 RAPGEF2Q9Y4G8 1499 aa3.28□□□□□ -1.88
VPS41-212ENST00000482217 WRNQ14191 1432 aaPredicted RBP eCLIP3.28□□□□□ -1.88
VPS41-212ENST00000482217 NCOA1Q15788 1441 aa3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms