RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 GDPD3Q7L5L3 318 aa9.84□□□□□ -0.83
MSH5-SAPCD1-205ENST00000476085 AMIGO2Q86SJ2 522 aa9.84□□□□□ -0.83
MSH5-SAPCD1-205ENST00000476085 TMEM219Q86XT9 240 aa9.84□□□□□ -0.83
MSH5-SAPCD1-205ENST00000476085 NDUFA11Q86Y39 141 aa9.84□□□□□ -0.83
MSH5-SAPCD1-205ENST00000476085 EGFL6Q8IUX8 553 aa9.84□□□□□ -0.83
MSH5-SAPCD1-205ENST00000476085 Q8IYB0 196 aa9.84□□□□□ -0.83
MSH5-SAPCD1-205ENST00000476085 RDH10Q8IZV5 341 aa9.84□□□□□ -0.83
MSH5-SAPCD1-205ENST00000476085 OR8J1Q8NGP2 316 aa9.84□□□□□ -0.83
MSH5-SAPCD1-205ENST00000476085 PP6455Q8WZ26 134 aa9.84□□□□□ -0.83
MSH5-SAPCD1-205ENST00000476085 ADAT3Q96EY9 351 aaPredicted RBP9.84□□□□□ -0.83
MSH5-SAPCD1-205ENST00000476085 ZNF714Q96N38 554 aa9.84□□□□□ -0.83
MSH5-SAPCD1-205ENST00000476085 TBX5Q99593 518 aa9.84□□□□□ -0.83
MSH5-SAPCD1-205ENST00000476085 PITPNC1Q9UKF7 332 aa9.84□□□□□ -0.83
MSH5-SAPCD1-205ENST00000476085 IGHV2-26A0A0B4J1V2 119 aa9.83□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 TRBV2A0A0J9YWF9 115 aa9.83□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 LOC107986453A0A1B0GWG9 222 aa9.83□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 hADV38S2A0JD32 116 aa9.83□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 MEX3AA1L020 520 aaKnown RBP9.83□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 ENTPD6O75354 484 aa9.83□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 FBXO24O75426 580 aa9.83□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 APOL3O95236 402 aa9.83□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 HAND1O96004 215 aa9.83□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 ISG15P05161 165 aa9.83□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 LMO1P25800 156 aa9.83□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 EDDM3BP56851 147 aa9.83□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 ACTA2P62736 377 aa9.83□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 ACTG2P63267 376 aa9.83□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 ACTC1P68032 377 aa9.83□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 ACTA1P68133 377 aa9.83□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 CD83Q01151 205 aa9.83□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 KPNB1Q14974 876 aaKnown RBP9.83□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 PLA1AQ53H76 456 aa9.83□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 SLC25A30Q5SVS4 291 aa9.83□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 ENTHD1Q8IYW4 607 aa9.83□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 FAM58AQ8N1B3 248 aa9.83□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 WFDC9Q8NEX5 89 aa9.83□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 OR4S1Q8NGB4 309 aa9.83□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 OR4P4Q8NGL7 312 aa9.83□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 OR2G2Q8NGZ5 317 aa9.83□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 CORO2AQ92828 525 aa9.83□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 BORCS8Q96FH0 119 aa9.83□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 MBOAT4Q96T53 435 aa9.83□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 NKX3-1Q99801 234 aaPredicted RBP9.83□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 PRSS22Q9GZN4 317 aa9.83□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 MMP28Q9H239 520 aa9.83□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 TMEM133Q9H2Q1 129 aa9.83□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 RBFOX1Q9NWB1 397 aaKnown RBP9.83□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 FRRS1LQ9P0K9 344 aa9.83□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 SESN1Q9Y6P5 492 aa9.83□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 H3BSH0 61 aa9.82□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 MGST3O14880 152 aa9.82□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 SERPINA3P01011 423 aa9.82□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 MT-ND2P03891 347 aa9.82□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 UBCP0CG48 685 aaKnown RBP9.82□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 BCL3P20749 454 aa9.82□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 PEX2P28328 305 aa9.82□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 OR3A1P47881 315 aa9.82□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 RBP2P50120 134 aa9.82□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 PDZK1IP1Q13113 114 aa9.82□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 OXLD1Q5BKU9 147 aa9.82□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 SPIN3Q5JUX0 258 aa9.82□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 RNF144BQ7Z419 303 aa9.82□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 REC114Q7Z4M0 266 aa9.82□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 KCTD20Q7Z5Y7 419 aa9.82□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 LYG1Q8N1E2 194 aa9.82□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 TPRX1Q8N7U7 411 aa9.82□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 OR10H4Q8NGA5 316 aa9.82□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 TRUB1Q8WWH5 349 aaKnown RBP9.82□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 PYDC1Q8WXC3 89 aa9.82□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 EMG1Q92979 244 aaKnown RBP9.82□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 CITED2Q99967 270 aaPredicted RBP9.82□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 PLEKHA1Q9HB21 404 aa9.82□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 HMG20AQ9NP66 347 aa9.82□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 UBE2J1Q9Y385 318 aaPredicted RBP9.82□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 COL7A1Q02388 2944 aa9.81□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 IGKV1-12A0A0C4DH73 117 aa9.81□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 XPNPEP2O43895 674 aa9.81□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 INMTO95050 263 aa9.81□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 IGKV1D-12P01611 117 aa9.81□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 IGLV1-47P01700 117 aa9.81□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 PRB2P02812 416 aaPredicted RBP9.81□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 ATF1P18846 271 aa9.81□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 DUSP1P28562 367 aa9.81□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 CD34P28906 385 aa9.81□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 ATP1B3P54709 279 aa9.81□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 OR12D2P58182 307 aa9.81□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 NANOS3P60323 173 aaKnown RBP9.81□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 CDC42P60953 191 aa9.81□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 BDH1Q02338 343 aa9.81□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 GRK1Q15835 563 aa9.81□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 NSUN5P1Q3KNT7 163 aa9.81□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 TP53I3Q53FA7 332 aa9.81□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 TMEM244Q5VVB8 128 aa9.81□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 HEPN1Q6WQI6 88 aa9.81□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 ZNF676Q8N7Q3 588 aa9.81□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 RFKQ969G6 155 aa9.81□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 HRASLS5Q96KN8 279 aa9.81□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 ADI1Q9BV57 179 aa9.81□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 CLEC7AQ9BXN2 247 aa9.81□□□□□ -0.84
MSH5-SAPCD1-205ENST00000476085 CHST6Q9GZX3 395 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms