RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 MUCL1Q96DR8 90 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 SF3B5Q9BWJ5 86 aaKnown RBP5.34□□□□□ -1.55
HERC4-209ENST00000473533 CTDSP1Q9GZU7 261 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 RIMS4Q9H426 269 aaPredicted RBP5.34□□□□□ -1.55
HERC4-209ENST00000473533 LYRM2Q9NU23 88 aaPredicted RBP5.34□□□□□ -1.55
HERC4-209ENST00000473533 PLEK2Q9NYT0 353 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 PRR13Q9NZ81 148 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 TINAGQ9UJW2 476 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 DKKL1Q9UK85 242 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 F5P12259 2224 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 TRAV1-1A0A0B4J248 108 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 KIR2DS1A0A191URI9 304 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 A0A1W2PP11 408 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 A0A1W2PR77 199 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 METTL12A8MUP2 240 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 TK1P04183 234 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 OR13C7P0DN81 318 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 SLC25A6P12236 298 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 FAHP16930 419 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 KIR2DS4P43632 304 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 CLDN15P56746 228 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 OR2B8PP59922 312 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 RPS23P62266 143 aaKnown RBP5.34□□□□□ -1.55
HERC4-209ENST00000473533 H3F3AP84243 136 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 KIR2DS1Q14954 304 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 UBE2V2Q15819 145 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 IGSF11Q5DX21 431 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 TMEM31Q5JXX7 168 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 C1orf189Q5VU69 101 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 ZNF429Q86V71 674 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 C7orf61Q8IZ16 206 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 CMTM1Q8IZ96 169 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 APCDD1LQ8NCL9 501 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 OR5D18Q8NGL1 313 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 M1APQ8TC57 530 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 ZNF501Q96CX3 271 aaPredicted RBP5.34□□□□□ -1.55
HERC4-209ENST00000473533 GNRHR2Q96P88 292 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 IP6K3Q96PC2 410 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 P2RX4Q99571 388 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 GGACTQ9BVM4 153 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 DEFB126Q9BYW3 111 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 NXT1Q9UKK6 140 aaKnown RBP5.34□□□□□ -1.55
HERC4-209ENST00000473533 MCTS1Q9ULC4 181 aaKnown RBP5.34□□□□□ -1.55
HERC4-209ENST00000473533 ATXN7L1Q9ULK2 861 aaPredicted RBP5.34□□□□□ -1.55
HERC4-209ENST00000473533 MTCH2Q9Y6C9 303 aa5.34□□□□□ -1.55
HERC4-209ENST00000473533 CHD7Q9P2D1 2997 aa5.34□□□□□ -1.56
HERC4-209ENST00000473533 ADAMTS9Q9P2N4 1935 aa5.34□□□□□ -1.56
HERC4-209ENST00000473533 C3orf85A0A1B0GTC6 90 aa5.34□□□□□ -1.56
HERC4-209ENST00000473533 H3BQ15 152 aa5.34□□□□□ -1.56
HERC4-209ENST00000473533 MPPED1O15442 326 aa5.34□□□□□ -1.56
HERC4-209ENST00000473533 XRCC2O43543 280 aa5.34□□□□□ -1.56
HERC4-209ENST00000473533 PTBP3O95758 552 aaKnown RBP5.34□□□□□ -1.56
HERC4-209ENST00000473533 CST2P09228 141 aa5.34□□□□□ -1.56
HERC4-209ENST00000473533 PNLIPP16233 465 aa5.34□□□□□ -1.56
HERC4-209ENST00000473533 CDAP32320 146 aa5.34□□□□□ -1.56
HERC4-209ENST00000473533 RAB4BP61018 213 aa5.34□□□□□ -1.56
HERC4-209ENST00000473533 DEFB133Q30KQ1 61 aa5.34□□□□□ -1.56
HERC4-209ENST00000473533 TMEM176BQ3YBM2 270 aaPredicted RBP5.34□□□□□ -1.56
HERC4-209ENST00000473533 FAM27BQ5VT28 67 aa5.34□□□□□ -1.56
HERC4-209ENST00000473533 SLC25A24Q6NUK1 477 aa5.34□□□□□ -1.56
HERC4-209ENST00000473533 LANCL3Q6ZV70 420 aa5.34□□□□□ -1.56
HERC4-209ENST00000473533 CPEB2Q7Z5Q1 589 aaKnown RBP5.34□□□□□ -1.56
HERC4-209ENST00000473533 FBXL14Q8N1E6 418 aa5.34□□□□□ -1.56
HERC4-209ENST00000473533 TMEM156Q8N614 296 aa5.34□□□□□ -1.56
HERC4-209ENST00000473533 FADS6Q8N9I5 356 aa5.34□□□□□ -1.56
HERC4-209ENST00000473533 POC1BQ8TC44 478 aa5.34□□□□□ -1.56
HERC4-209ENST00000473533 PIGTQ969N2 578 aa5.34□□□□□ -1.56
HERC4-209ENST00000473533 ISOC2Q96AB3 205 aa5.34□□□□□ -1.56
HERC4-209ENST00000473533 MSI2Q96DH6 328 aaKnown RBP5.34□□□□□ -1.56
HERC4-209ENST00000473533 SPACA9Q96E40 222 aaPredicted RBP5.34□□□□□ -1.56
HERC4-209ENST00000473533 TMEM56Q96MV1 263 aa5.34□□□□□ -1.56
HERC4-209ENST00000473533 SCRT1Q9BWW7 348 aa5.34□□□□□ -1.56
HERC4-209ENST00000473533 ULBP2Q9BZM5 246 aa5.34□□□□□ -1.56
HERC4-209ENST00000473533 TMEM222Q9H0R3 208 aa5.34□□□□□ -1.56
HERC4-209ENST00000473533 MYOTQ9UBF9 498 aa5.34□□□□□ -1.56
HERC4-209ENST00000473533 WSB1Q9Y6I7 421 aa5.34□□□□□ -1.56
HERC4-209ENST00000473533 TMEM56-RWDD3S4R434 201 aa5.34□□□□□ -1.56
HERC4-209ENST00000473533 A0A1W2PPE2 198 aa5.33□□□□□ -1.56
HERC4-209ENST00000473533 CLEC18AA5D8T8 446 aa5.33□□□□□ -1.56
HERC4-209ENST00000473533 SCAF4O95104 1147 aaKnown RBP5.33□□□□□ -1.56
HERC4-209ENST00000473533 FUT3P21217 361 aa5.33□□□□□ -1.56
HERC4-209ENST00000473533 ITGA3P26006 1051 aa5.33□□□□□ -1.56
HERC4-209ENST00000473533 GLIPR1P48060 266 aa5.33□□□□□ -1.56
HERC4-209ENST00000473533 FXYD4P59646 89 aa5.33□□□□□ -1.56
HERC4-209ENST00000473533 CHAF1BQ13112 559 aa5.33□□□□□ -1.56
HERC4-209ENST00000473533 EXT1Q16394 746 aa5.33□□□□□ -1.56
HERC4-209ENST00000473533 NKAIN1Q4KMZ8 207 aa5.33□□□□□ -1.56
HERC4-209ENST00000473533 OR2B11Q5JQS5 317 aa5.33□□□□□ -1.56
HERC4-209ENST00000473533 LYZL2Q7Z4W2 148 aa5.33□□□□□ -1.56
HERC4-209ENST00000473533 H1FOOQ8IZA3 346 aaPredicted RBP5.33□□□□□ -1.56
HERC4-209ENST00000473533 CLEC18CQ8NCF0 446 aa5.33□□□□□ -1.56
HERC4-209ENST00000473533 SCGB1C1Q8TD33 95 aa5.33□□□□□ -1.56
HERC4-209ENST00000473533 NPRL2Q8WTW4 380 aa5.33□□□□□ -1.56
HERC4-209ENST00000473533 CPNE4Q96A23 557 aaPredicted RBP5.33□□□□□ -1.56
HERC4-209ENST00000473533 RAB39BQ96DA2 213 aa5.33□□□□□ -1.56
HERC4-209ENST00000473533 C20orf24Q9BUV8 137 aa5.33□□□□□ -1.56
HERC4-209ENST00000473533 B3GALT1Q9Y5Z6 326 aa5.33□□□□□ -1.56
HERC4-209ENST00000473533 WDFY3Q8IZQ1 3526 aa5.33□□□□□ -1.56
HERC4-209ENST00000473533 PRRC2CQ9Y520 2896 aaKnown RBP5.33□□□□□ -1.56
HERC4-209ENST00000473533 FAM186AA6NE01 2351 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms