RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 PLA1AQ53H76 456 aa12.76□□□□□ -0.37
CCDC88B-205ENST00000472524 SLC35E4Q6ICL7 350 aa12.76□□□□□ -0.37
CCDC88B-205ENST00000472524 FDX2Q6P4F2 183 aa12.76□□□□□ -0.37
CCDC88B-205ENST00000472524 LHFPL2Q6ZUX7 228 aa12.76□□□□□ -0.37
CCDC88B-205ENST00000472524 UTS2BQ765I0 119 aa12.76□□□□□ -0.37
CCDC88B-205ENST00000472524 LHFPL4Q7Z7J7 247 aa12.76□□□□□ -0.37
CCDC88B-205ENST00000472524 LHFPL3Q86UP9 236 aa12.76□□□□□ -0.37
CCDC88B-205ENST00000472524 Q8IYB0 196 aa12.76□□□□□ -0.37
CCDC88B-205ENST00000472524 FAM58AQ8N1B3 248 aa12.76□□□□□ -0.37
CCDC88B-205ENST00000472524 ZNF676Q8N7Q3 588 aa12.76□□□□□ -0.37
CCDC88B-205ENST00000472524 TPRX1Q8N7U7 411 aa12.76□□□□□ -0.37
CCDC88B-205ENST00000472524 MRPL48Q96GC5 212 aaKnown RBP12.76□□□□□ -0.37
CCDC88B-205ENST00000472524 SNX22Q96L94 193 aa12.76□□□□□ -0.37
CCDC88B-205ENST00000472524 OPALINQ96PE5 141 aa12.76□□□□□ -0.37
CCDC88B-205ENST00000472524 SPACA5Q96QH8 159 aa12.76□□□□□ -0.37
CCDC88B-205ENST00000472524 SLC29A1Q99808 456 aa12.76□□□□□ -0.37
CCDC88B-205ENST00000472524 ALG8Q9BVK2 526 aa12.76□□□□□ -0.37
CCDC88B-205ENST00000472524 AMBNQ9NP70 447 aa12.76□□□□□ -0.37
CCDC88B-205ENST00000472524 HHLA2Q9UM44 414 aa12.76□□□□□ -0.37
CCDC88B-205ENST00000472524 TRBV2A0A0J9YWF9 115 aa12.75□□□□□ -0.37
CCDC88B-205ENST00000472524 OR4C45A6NMZ5 311 aa12.75□□□□□ -0.37
CCDC88B-205ENST00000472524 TSPAN15O95858 294 aa12.75□□□□□ -0.37
CCDC88B-205ENST00000472524 ARG1P05089 322 aa12.75□□□□□ -0.37
CCDC88B-205ENST00000472524 GABRB1P18505 474 aa12.75□□□□□ -0.37
CCDC88B-205ENST00000472524 PEX2P28328 305 aa12.75□□□□□ -0.37
CCDC88B-205ENST00000472524 CCR9P51686 369 aa12.75□□□□□ -0.37
CCDC88B-205ENST00000472524 PRKDCP78527 4128 aaKnown RBP12.75□□□□□ -0.37
CCDC88B-205ENST00000472524 GRK1Q15835 563 aa12.75□□□□□ -0.37
CCDC88B-205ENST00000472524 TCF23Q7RTU1 214 aa12.75□□□□□ -0.37
CCDC88B-205ENST00000472524 C10orf67Q8IYJ2 551 aa12.75□□□□□ -0.37
CCDC88B-205ENST00000472524 OR5D18Q8NGL1 313 aa12.75□□□□□ -0.37
CCDC88B-205ENST00000472524 OR13C9Q8NGT0 318 aa12.75□□□□□ -0.37
CCDC88B-205ENST00000472524 ZNF714Q96N38 554 aa12.75□□□□□ -0.37
CCDC88B-205ENST00000472524 ISG20L2Q9H9L3 353 aaKnown RBP12.75□□□□□ -0.37
CCDC88B-205ENST00000472524 S100A14Q9HCY8 104 aa12.75□□□□□ -0.37
CCDC88B-205ENST00000472524 MYRFQ9Y2G1 1151 aa12.75□□□□□ -0.37
CCDC88B-205ENST00000472524 GABRA5P31644 462 aa12.74□□□□□ -0.37
CCDC88B-205ENST00000472524 PDZK1IP1Q13113 114 aa12.74□□□□□ -0.37
CCDC88B-205ENST00000472524 GALEQ14376 348 aa12.74□□□□□ -0.37
CCDC88B-205ENST00000472524 ZBTB49Q6ZSB9 765 aa12.74□□□□□ -0.37
CCDC88B-205ENST00000472524 RNF144BQ7Z419 303 aa12.74□□□□□ -0.37
CCDC88B-205ENST00000472524 C1QL4Q86Z23 238 aa12.74□□□□□ -0.37
CCDC88B-205ENST00000472524 PQLC1Q8N2U9 271 aa12.74□□□□□ -0.37
CCDC88B-205ENST00000472524 OR52N4Q8NGI2 321 aa12.74□□□□□ -0.37
CCDC88B-205ENST00000472524 OR13D1Q8NGV5 346 aa12.74□□□□□ -0.37
CCDC88B-205ENST00000472524 PPP1R35Q8TAP8 253 aa12.74□□□□□ -0.37
CCDC88B-205ENST00000472524 SPSB1Q96BD6 273 aa12.74□□□□□ -0.37
CCDC88B-205ENST00000472524 Q96MT0 163 aa12.74□□□□□ -0.37
CCDC88B-205ENST00000472524 NEK6Q9HC98 313 aa12.74□□□□□ -0.37
CCDC88B-205ENST00000472524 GSTK1Q9Y2Q3 226 aa12.74□□□□□ -0.37
CCDC88B-205ENST00000472524 SIGLEC9Q9Y336 463 aa12.74□□□□□ -0.37
CCDC88B-205ENST00000472524 LOC100130705A0A1B0GUX0 176 aa12.73□□□□□ -0.37
CCDC88B-205ENST00000472524 hADV38S2A0JD32 116 aa12.73□□□□□ -0.37
CCDC88B-205ENST00000472524 SIRPB1O00241 398 aa12.73□□□□□ -0.37
CCDC88B-205ENST00000472524 MPZL2O60487 215 aa12.73□□□□□ -0.37
CCDC88B-205ENST00000472524 PSPNO60542 156 aa12.73□□□□□ -0.37
CCDC88B-205ENST00000472524 RBP4P02753 201 aa12.73□□□□□ -0.37
CCDC88B-205ENST00000472524 IGHV1-8P0DP01 117 aa12.73□□□□□ -0.37
CCDC88B-205ENST00000472524 MEF2CQ06413 473 aaPredicted RBP12.73□□□□□ -0.37
CCDC88B-205ENST00000472524 DYNC1I2Q13409 638 aaKnown RBP12.73□□□□□ -0.37
CCDC88B-205ENST00000472524 FAM189A2Q15884 450 aa12.73□□□□□ -0.37
CCDC88B-205ENST00000472524 AANATQ16613 207 aa12.73□□□□□ -0.37
CCDC88B-205ENST00000472524 DYNAPQ8N1N2 210 aa12.73□□□□□ -0.37
CCDC88B-205ENST00000472524 OR4S1Q8NGB4 309 aa12.73□□□□□ -0.37
CCDC88B-205ENST00000472524 OR4C13Q8NGP0 309 aa12.73□□□□□ -0.37
CCDC88B-205ENST00000472524 RHOXF1Q8NHV9 184 aa12.73□□□□□ -0.37
CCDC88B-205ENST00000472524 MYCBPQ99417 103 aaPredicted RBP12.73□□□□□ -0.37
CCDC88B-205ENST00000472524 NKX3-1Q99801 234 aaPredicted RBP12.73□□□□□ -0.37
CCDC88B-205ENST00000472524 RAB18Q9NP72 206 aa12.73□□□□□ -0.37
CCDC88B-205ENST00000472524 ERVK13-1Q9NX77 482 aa12.73□□□□□ -0.37
CCDC88B-205ENST00000472524 GLS2Q9UI32 602 aa12.73□□□□□ -0.37
CCDC88B-205ENST00000472524 IGKV1-12A0A0C4DH73 117 aa12.72□□□□□ -0.37
CCDC88B-205ENST00000472524 ODF3BA8MYP8 253 aa12.72□□□□□ -0.37
CCDC88B-205ENST00000472524 EBAG9O00559 213 aa12.72□□□□□ -0.37
CCDC88B-205ENST00000472524 CHST1O43916 411 aa12.72□□□□□ -0.37
CCDC88B-205ENST00000472524 BAG2O95816 211 aa12.72□□□□□ -0.37
CCDC88B-205ENST00000472524 FADS2O95864 444 aaKnown RBP12.72□□□□□ -0.37
CCDC88B-205ENST00000472524 IGKV1D-12P01611 117 aa12.72□□□□□ -0.37
CCDC88B-205ENST00000472524 OR3A1P47881 315 aa12.72□□□□□ -0.37
CCDC88B-205ENST00000472524 ZNF146Q15072 292 aa12.72□□□□□ -0.37
CCDC88B-205ENST00000472524 SPIN3Q5JUX0 258 aa12.72□□□□□ -0.37
CCDC88B-205ENST00000472524 ZNF626Q68DY1 528 aa12.72□□□□□ -0.37
CCDC88B-205ENST00000472524 CRIP3Q6Q6R5 217 aa12.72□□□□□ -0.37
CCDC88B-205ENST00000472524 TRAPPC6BQ86SZ2 158 aa12.72□□□□□ -0.37
CCDC88B-205ENST00000472524 SYS1Q8N2H4 156 aa12.72□□□□□ -0.37
CCDC88B-205ENST00000472524 OR52I1Q8NGK6 324 aa12.72□□□□□ -0.37
CCDC88B-205ENST00000472524 FOXRED1Q96CU9 486 aaPredicted RBP12.72□□□□□ -0.37
CCDC88B-205ENST00000472524 ZCCHC4Q9H5U6 513 aa12.72□□□□□ -0.37
CCDC88B-205ENST00000472524 SEBOXQ9HB31 216 aaPredicted RBP12.72□□□□□ -0.37
CCDC88B-205ENST00000472524 HMG20AQ9NP66 347 aa12.72□□□□□ -0.37
CCDC88B-205ENST00000472524 EXOSC4Q9NPD3 245 aaKnown RBP12.72□□□□□ -0.37
CCDC88B-205ENST00000472524 FAM118AQ9NWS6 357 aa12.72□□□□□ -0.37
CCDC88B-205ENST00000472524 FBLN5Q9UBX5 448 aa12.72□□□□□ -0.37
CCDC88B-205ENST00000472524 TBL2Q9Y4P3 447 aaKnown RBP12.72□□□□□ -0.37
CCDC88B-205ENST00000472524 LINC00312Q9Y6C7 94 aa12.72□□□□□ -0.37
CCDC88B-205ENST00000472524 FAM90A8PA6NJQ4 464 aa12.71□□□□□ -0.37
CCDC88B-205ENST00000472524 E9PI62 339 aa12.71□□□□□ -0.37
CCDC88B-205ENST00000472524 MGST3O14880 152 aa12.71□□□□□ -0.37
CCDC88B-205ENST00000472524 MT-ND2P03891 347 aa12.71□□□□□ -0.37
CCDC88B-205ENST00000472524 HCKP08631 526 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 89.9 ms