RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 LAMP5Q9UJQ1 280 aa5.92□□□□□ -1.46
USP54-208ENST00000461520 LRP12Q9Y561 859 aa5.92□□□□□ -1.46
USP54-208ENST00000461520 WNK1Q9H4A3 2382 aa5.92□□□□□ -1.46
USP54-208ENST00000461520 TMEM269A0A1B0GVZ9 245 aa5.91□□□□□ -1.46
USP54-208ENST00000461520 BTBD17A6NE02 478 aa5.91□□□□□ -1.46
USP54-208ENST00000461520 OR2AT4A6NND4 320 aa5.91□□□□□ -1.46
USP54-208ENST00000461520 RNASEK-C17orf49H0YIS7 233 aa5.91□□□□□ -1.46
USP54-208ENST00000461520 NPFFO15130 113 aa5.91□□□□□ -1.46
USP54-208ENST00000461520 ZNF254O75437 659 aa5.91□□□□□ -1.46
USP54-208ENST00000461520 E2F6O75461 281 aa5.91□□□□□ -1.46
USP54-208ENST00000461520 TSPAN9O75954 239 aa5.91□□□□□ -1.46
USP54-208ENST00000461520 IGLV3-1P01715 115 aa5.91□□□□□ -1.46
USP54-208ENST00000461520 ACAA1P09110 424 aaPredicted RBP5.91□□□□□ -1.46
USP54-208ENST00000461520 SELLP14151 372 aa5.91□□□□□ -1.46
USP54-208ENST00000461520 SLC2A5P22732 501 aa5.91□□□□□ -1.46
USP54-208ENST00000461520 GLRA1P23415 457 aa5.91□□□□□ -1.46
USP54-208ENST00000461520 TGFBR2P37173 567 aa5.91□□□□□ -1.46
USP54-208ENST00000461520 GPM6AP51674 278 aa5.91□□□□□ -1.46
USP54-208ENST00000461520 UBE2E1P51965 193 aa5.91□□□□□ -1.46
USP54-208ENST00000461520 GMFBP60983 142 aa5.91□□□□□ -1.46
USP54-208ENST00000461520 GNG3P63215 75 aa5.91□□□□□ -1.46
USP54-208ENST00000461520 ACSM1Q08AH1 577 aa5.91□□□□□ -1.46
USP54-208ENST00000461520 BLMHQ13867 455 aa5.91□□□□□ -1.46
USP54-208ENST00000461520 TAF9Q16594 264 aa5.91□□□□□ -1.46
USP54-208ENST00000461520 CEACAM21Q3KPI0 293 aa5.91□□□□□ -1.46
USP54-208ENST00000461520 NCR3LG1Q68D85 454 aa5.91□□□□□ -1.46
USP54-208ENST00000461520 Q6ZSV7 163 aa5.91□□□□□ -1.46
USP54-208ENST00000461520 TRPM8Q7Z2W7 1104 aa5.91□□□□□ -1.46
USP54-208ENST00000461520 ZNF679Q8IYX0 411 aa5.91□□□□□ -1.46
USP54-208ENST00000461520 BBS1Q8NFJ9 593 aa5.91□□□□□ -1.46
USP54-208ENST00000461520 OR5A2Q8NGI9 324 aa5.91□□□□□ -1.46
USP54-208ENST00000461520 OR5R1Q8NH85 324 aa5.91□□□□□ -1.46
USP54-208ENST00000461520 ZNF671Q8TAW3 534 aa5.91□□□□□ -1.46
USP54-208ENST00000461520 FAM81AQ8TBF8 368 aa5.91□□□□□ -1.46
USP54-208ENST00000461520 DNAJC9Q8WXX5 260 aa5.91□□□□□ -1.46
USP54-208ENST00000461520 H1FXQ92522 213 aaKnown RBP5.91□□□□□ -1.46
USP54-208ENST00000461520 GAFA1Q96PS6 74 aa5.91□□□□□ -1.46
USP54-208ENST00000461520 TEAD3Q99594 435 aa5.91□□□□□ -1.46
USP54-208ENST00000461520 YIPF3Q9GZM5 350 aa5.91□□□□□ -1.46
USP54-208ENST00000461520 FGF23Q9GZV9 251 aaPredicted RBP5.91□□□□□ -1.46
USP54-208ENST00000461520 OR51I2Q9H344 312 aa5.91□□□□□ -1.46
USP54-208ENST00000461520 C16orf95Q9H693 158 aa5.91□□□□□ -1.46
USP54-208ENST00000461520 METTL8Q9H825 291 aaKnown RBP5.91□□□□□ -1.46
USP54-208ENST00000461520 SNTG1Q9NSN8 517 aa5.91□□□□□ -1.46
USP54-208ENST00000461520 FAM206AQ9NX38 181 aa5.91□□□□□ -1.46
USP54-208ENST00000461520 RASL12Q9NYN1 266 aa5.91□□□□□ -1.46
USP54-208ENST00000461520 DNAJB9Q9UBS3 223 aa5.91□□□□□ -1.46
USP54-208ENST00000461520 STEAP1Q9UHE8 339 aa5.91□□□□□ -1.46
USP54-208ENST00000461520 VPREB3Q9UKI3 123 aa5.91□□□□□ -1.46
USP54-208ENST00000461520 KLHDC2Q9Y2U9 406 aa5.91□□□□□ -1.46
USP54-208ENST00000461520 TMEM14AQ9Y6G1 99 aa5.91□□□□□ -1.46
USP54-208ENST00000461520 A0A1W2PQ09 198 aa5.9□□□□□ -1.46
USP54-208ENST00000461520 MEIOCA2RUB1 952 aa5.9□□□□□ -1.46
USP54-208ENST00000461520 OR5B21A6NL26 309 aa5.9□□□□□ -1.46
USP54-208ENST00000461520 ZNF732B4DXR9 585 aa5.9□□□□□ -1.46
USP54-208ENST00000461520 FKBP6O75344 327 aa5.9□□□□□ -1.46
USP54-208ENST00000461520 MTRF1O75570 445 aaKnown RBP5.9□□□□□ -1.46
USP54-208ENST00000461520 RHBDL1O75783 438 aa5.9□□□□□ -1.46
USP54-208ENST00000461520 PAHP00439 452 aa5.9□□□□□ -1.46
USP54-208ENST00000461520 PSG2P11465 335 aa5.9□□□□□ -1.46
USP54-208ENST00000461520 PRKACGP22612 351 aa5.9□□□□□ -1.46
USP54-208ENST00000461520 SAA4P35542 130 aa5.9□□□□□ -1.46
USP54-208ENST00000461520 CRISP1P54107 249 aa5.9□□□□□ -1.46
USP54-208ENST00000461520 KRTAP10-3P60369 221 aa5.9□□□□□ -1.46
USP54-208ENST00000461520 CBX1P83916 185 aa5.9□□□□□ -1.46
USP54-208ENST00000461520 RIPPLY1Q0D2K3 151 aa5.9□□□□□ -1.46
USP54-208ENST00000461520 APOFQ13790 326 aa5.9□□□□□ -1.46
USP54-208ENST00000461520 FLOT2Q14254 428 aa5.9□□□□□ -1.46
USP54-208ENST00000461520 SNAPC1Q16533 368 aa5.9□□□□□ -1.46
USP54-208ENST00000461520 DNAL1Q4LDG9 190 aa5.9□□□□□ -1.46
USP54-208ENST00000461520 LCN1P1Q5VSP4 162 aa5.9□□□□□ -1.46
USP54-208ENST00000461520 TMEM236Q5W0B7 351 aa5.9□□□□□ -1.46
USP54-208ENST00000461520 DHRS7BQ6IAN0 325 aaPredicted RBP5.9□□□□□ -1.46
USP54-208ENST00000461520 ASPHD2Q6ICH7 369 aa5.9□□□□□ -1.46
USP54-208ENST00000461520 SPATA24Q86W54 205 aa5.9□□□□□ -1.46
USP54-208ENST00000461520 HS3ST5Q8IZT8 346 aa5.9□□□□□ -1.46
USP54-208ENST00000461520 ZNRF1Q8ND25 227 aa5.9□□□□□ -1.46
USP54-208ENST00000461520 OR5D13Q8NGL4 314 aa5.9□□□□□ -1.46
USP54-208ENST00000461520 ASB17Q8WXJ9 295 aa5.9□□□□□ -1.46
USP54-208ENST00000461520 AQP3Q92482 292 aa5.9□□□□□ -1.46
USP54-208ENST00000461520 NRBF2Q96F24 287 aa5.9□□□□□ -1.46
USP54-208ENST00000461520 SDSLQ96GA7 329 aa5.9□□□□□ -1.46
USP54-208ENST00000461520 OR8B4Q96RC9 309 aa5.9□□□□□ -1.46
USP54-208ENST00000461520 RBM4BQ9BQ04 359 aaKnown RBP5.9□□□□□ -1.46
USP54-208ENST00000461520 PRRG3Q9BZD7 231 aa5.9□□□□□ -1.46
USP54-208ENST00000461520 PBOV1Q9GZY1 135 aa5.9□□□□□ -1.46
USP54-208ENST00000461520 SEMA6AQ9H2E6 1030 aa5.9□□□□□ -1.46
USP54-208ENST00000461520 PAPOLBQ9NRJ5 636 aaKnown RBP5.9□□□□□ -1.46
USP54-208ENST00000461520 TVP23BQ9NYZ1 205 aa5.9□□□□□ -1.46
USP54-208ENST00000461520 NUFIP1Q9UHK0 495 aaKnown RBP5.9□□□□□ -1.46
USP54-208ENST00000461520 ZNF222Q9UK12 451 aa5.9□□□□□ -1.46
USP54-208ENST00000461520 MAB21L2Q9Y586 359 aa5.9□□□□□ -1.46
USP54-208ENST00000461520 IGKV1D-17A0A075B6S4 117 aa5.89□□□□□ -1.47
USP54-208ENST00000461520 A0A1W2PPH5 198 aa5.89□□□□□ -1.47
USP54-208ENST00000461520 TCRBV3S1A0A5B6 114 aa5.89□□□□□ -1.47
USP54-208ENST00000461520 GYG2O15488 501 aa5.89□□□□□ -1.47
USP54-208ENST00000461520 DHRS3O75911 302 aa5.89□□□□□ -1.47
USP54-208ENST00000461520 NRASP01111 189 aa5.89□□□□□ -1.47
USP54-208ENST00000461520 TFF1P04155 84 aa5.89□□□□□ -1.47
USP54-208ENST00000461520 PEX2P28328 305 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms