RNA–Protein interactions for RNA: ENST00000460265.5

LMNB1-203, Transcript of lamin B1, humanhuman

TSL 1 (best)

Gene LMNB1, Length 3,475 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMNB1-203ENST00000460265 C3AR1Q16581 482 aa13.48□□□□□ -0.25
LMNB1-203ENST00000460265 HES7Q9BYE0 225 aa13.48□□□□□ -0.25
LMNB1-203ENST00000460265 SRXN1Q9BYN0 137 aa13.48□□□□□ -0.25
LMNB1-203ENST00000460265 C12orf49Q9H741 205 aa13.48□□□□□ -0.25
LMNB1-203ENST00000460265 C9JQL5 133 aa13.48□□□□□ -0.25
LMNB1-203ENST00000460265 ZIC3O60481 467 aa13.48□□□□□ -0.25
LMNB1-203ENST00000460265 TMEM127O75204 238 aa13.48□□□□□ -0.25
LMNB1-203ENST00000460265 PSMB6P28072 239 aa13.48□□□□□ -0.25
LMNB1-203ENST00000460265 ZNF674Q2M3X9 581 aa13.48□□□□□ -0.25
LMNB1-203ENST00000460265 SLC30A7Q8NEW0 376 aa13.48□□□□□ -0.25
LMNB1-203ENST00000460265 SEMA6DQ8NFY4 1073 aa13.48□□□□□ -0.25
LMNB1-203ENST00000460265 RPS4Y2Q8TD47 263 aa13.48□□□□□ -0.25
LMNB1-203ENST00000460265 IMMP1LQ96LU5 166 aa13.48□□□□□ -0.25
LMNB1-203ENST00000460265 ATG101Q9BSB4 218 aa13.48□□□□□ -0.25
LMNB1-203ENST00000460265 CHST5Q9GZS9 411 aa13.48□□□□□ -0.25
LMNB1-203ENST00000460265 EIF5A2Q9GZV4 153 aaKnown RBP13.48□□□□□ -0.25
LMNB1-203ENST00000460265 TMEM100Q9NV29 134 aa13.48□□□□□ -0.25
LMNB1-203ENST00000460265 CACFD1Q9UGQ2 172 aa13.48□□□□□ -0.25
LMNB1-203ENST00000460265 C14orf166Q9Y224 244 aaKnown RBP13.48□□□□□ -0.25
LMNB1-203ENST00000460265 FREM2Q5SZK8 3169 aa13.48□□□□□ -0.25
LMNB1-203ENST00000460265 PHOX2AO14813 284 aa13.48□□□□□ -0.25
LMNB1-203ENST00000460265 CDC14BO60729 498 aa13.48□□□□□ -0.25
LMNB1-203ENST00000460265 SYNGR4O95473 234 aa13.48□□□□□ -0.25
LMNB1-203ENST00000460265 ABCA11PQ4W5N1 156 aa13.48□□□□□ -0.25
LMNB1-203ENST00000460265 PLCXD3Q63HM9 321 aa13.48□□□□□ -0.25
LMNB1-203ENST00000460265 WDR5BQ86VZ2 330 aa13.48□□□□□ -0.25
LMNB1-203ENST00000460265 ZNF100Q8IYN0 542 aa13.48□□□□□ -0.25
LMNB1-203ENST00000460265 SLC7A11Q9UPY5 501 aa13.48□□□□□ -0.25
LMNB1-203ENST00000460265 VSIG4Q9Y279 399 aa13.48□□□□□ -0.25
LMNB1-203ENST00000460265 SLC33A1O00400 549 aaPredicted RBP13.47□□□□□ -0.25
LMNB1-203ENST00000460265 LRP3O75074 770 aa13.47□□□□□ -0.25
LMNB1-203ENST00000460265 ID4P47928 161 aa13.47□□□□□ -0.25
LMNB1-203ENST00000460265 MLF1P58340 268 aa13.47□□□□□ -0.25
LMNB1-203ENST00000460265 MST1LQ2TV78 715 aa13.47□□□□□ -0.25
LMNB1-203ENST00000460265 KIAA2026Q5HYC2 2103 aa13.47□□□□□ -0.25
LMNB1-203ENST00000460265 EIF5AL1Q6IS14 154 aaKnown RBP13.47□□□□□ -0.25
LMNB1-203ENST00000460265 REEP6Q96HR9 211 aa13.47□□□□□ -0.25
LMNB1-203ENST00000460265 MOB1AQ9H8S9 216 aa13.47□□□□□ -0.25
LMNB1-203ENST00000460265 DOK5Q9P104 306 aa13.47□□□□□ -0.25
LMNB1-203ENST00000460265 KCNIP3Q9Y2W7 256 aa13.47□□□□□ -0.25
LMNB1-203ENST00000460265 A0A1B0GTI1 187 aa13.47□□□□□ -0.25
LMNB1-203ENST00000460265 CYTIPO60759 359 aa13.47□□□□□ -0.25
LMNB1-203ENST00000460265 ITGB2P05107 769 aa13.47□□□□□ -0.25
LMNB1-203ENST00000460265 IGFBP3P17936 291 aaPredicted RBP13.47□□□□□ -0.25
LMNB1-203ENST00000460265 SERPINF1P36955 418 aa13.47□□□□□ -0.25
LMNB1-203ENST00000460265 RRADP55042 308 aa13.47□□□□□ -0.25
LMNB1-203ENST00000460265 ZXDAP98168 799 aa13.47□□□□□ -0.25
LMNB1-203ENST00000460265 NEU1Q99519 415 aa13.47□□□□□ -0.25
LMNB1-203ENST00000460265 MMP24Q9Y5R2 645 aa13.47□□□□□ -0.25
LMNB1-203ENST00000460265 A0A087WZY1 265 aa13.47□□□□□ -0.25
LMNB1-203ENST00000460265 FSTP19883 344 aa13.47□□□□□ -0.25
LMNB1-203ENST00000460265 RBMXP38159 391 aaKnown RBP13.47□□□□□ -0.25
LMNB1-203ENST00000460265 SULT1A1P50225 295 aa13.47□□□□□ -0.25
LMNB1-203ENST00000460265 ZNF260Q3ZCT1 412 aa13.47□□□□□ -0.25
LMNB1-203ENST00000460265 PAQR4Q8N4S7 273 aaPredicted RBP13.47□□□□□ -0.25
LMNB1-203ENST00000460265 HDHD3Q9BSH5 251 aaPredicted RBP13.47□□□□□ -0.25
LMNB1-203ENST00000460265 DEFB127Q9H1M4 99 aa13.47□□□□□ -0.25
LMNB1-203ENST00000460265 B4GALT7Q9UBV7 327 aa13.47□□□□□ -0.25
LMNB1-203ENST00000460265 ZDHHC8Q9ULC8 765 aa13.47□□□□□ -0.25
LMNB1-203ENST00000460265 CADP27708 2225 aa13.46□□□□□ -0.25
LMNB1-203ENST00000460265 PPP1R2P9O14990 202 aa13.46□□□□□ -0.25
LMNB1-203ENST00000460265 ADAP1O75689 374 aa13.46□□□□□ -0.25
LMNB1-203ENST00000460265 IFNA10P01566 189 aa13.46□□□□□ -0.25
LMNB1-203ENST00000460265 FAM157CP0CG43 387 aa13.46□□□□□ -0.25
LMNB1-203ENST00000460265 HIST1H1DP16402 221 aaKnown RBP13.46□□□□□ -0.25
LMNB1-203ENST00000460265 ANOS1P23352 680 aa13.46□□□□□ -0.25
LMNB1-203ENST00000460265 GLRA1P23415 457 aa13.46□□□□□ -0.25
LMNB1-203ENST00000460265 FKBP2P26885 142 aaKnown RBP13.46□□□□□ -0.25
LMNB1-203ENST00000460265 DVL1P1P54792 670 aaPredicted RBP13.46□□□□□ -0.25
LMNB1-203ENST00000460265 SNAI3Q3KNW1 292 aa13.46□□□□□ -0.25
LMNB1-203ENST00000460265 SPIN3Q5JUX0 258 aa13.46□□□□□ -0.25
LMNB1-203ENST00000460265 C1orf100Q5SVJ3 147 aa13.46□□□□□ -0.25
LMNB1-203ENST00000460265 TIPARPQ7Z3E1 657 aaKnown RBP13.46□□□□□ -0.25
LMNB1-203ENST00000460265 M1APQ8TC57 530 aa13.46□□□□□ -0.25
LMNB1-203ENST00000460265 ANGPTL4Q9BY76 406 aa13.46□□□□□ -0.25
LMNB1-203ENST00000460265 BOKQ9UMX3 212 aaPredicted RBP13.46□□□□□ -0.25
LMNB1-203ENST00000460265 A0A1W2PNV4 684 aa13.46□□□□□ -0.26
LMNB1-203ENST00000460265 LPAR6P43657 344 aa13.46□□□□□ -0.26
LMNB1-203ENST00000460265 TRA2AQ13595 282 aaKnown RBP eCLIP13.46□□□□□ -0.26
LMNB1-203ENST00000460265 HIST2H3AQ71DI3 136 aa13.46□□□□□ -0.26
LMNB1-203ENST00000460265 FOXB1Q99853 325 aa13.46□□□□□ -0.26
LMNB1-203ENST00000460265 C2orf88Q9BSF0 95 aa13.46□□□□□ -0.26
LMNB1-203ENST00000460265 FAAP24Q9BTP7 215 aa13.46□□□□□ -0.26
LMNB1-203ENST00000460265 GPR61Q9BZJ8 451 aa13.46□□□□□ -0.26
LMNB1-203ENST00000460265 LPAR5Q9H1C0 372 aa13.46□□□□□ -0.26
LMNB1-203ENST00000460265 SHANK1Q9Y566 2161 aa13.46□□□□□ -0.26
LMNB1-203ENST00000460265 CCDC163A0A0D9SF12 145 aa13.45□□□□□ -0.26
LMNB1-203ENST00000460265 SCGNO76038 276 aa13.45□□□□□ -0.26
LMNB1-203ENST00000460265 RAC3P60763 192 aa13.45□□□□□ -0.26
LMNB1-203ENST00000460265 HMGN3Q15651 99 aa13.45□□□□□ -0.26
LMNB1-203ENST00000460265 FAM189A2Q15884 450 aa13.45□□□□□ -0.26
LMNB1-203ENST00000460265 KDF1Q8NAX2 398 aaPredicted RBP13.45□□□□□ -0.26
LMNB1-203ENST00000460265 TERB2Q8NHR7 220 aa13.45□□□□□ -0.26
LMNB1-203ENST00000460265 DHRS3O75911 302 aa13.45□□□□□ -0.26
LMNB1-203ENST00000460265 OR2C1O95371 312 aa13.45□□□□□ -0.26
LMNB1-203ENST00000460265 TSPAN15O95858 294 aa13.45□□□□□ -0.26
LMNB1-203ENST00000460265 HLA-HP01893 362 aa13.45□□□□□ -0.26
LMNB1-203ENST00000460265 DUSP1P28562 367 aa13.45□□□□□ -0.26
LMNB1-203ENST00000460265 HGFACQ04756 655 aa13.45□□□□□ -0.26
LMNB1-203ENST00000460265 LBHQ53QV2 105 aaPredicted RBP13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 11.2 ms