RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 OPA3Q9H6K4 179 aa12.99□□□□□ -0.33
LDLR-202ENST00000455727 KCNIP3Q9Y2W7 256 aa12.99□□□□□ -0.33
LDLR-202ENST00000455727 FGF16O43320 207 aa12.99□□□□□ -0.33
LDLR-202ENST00000455727 HOXD4P09016 255 aaPredicted RBP12.99□□□□□ -0.33
LDLR-202ENST00000455727 CD46P15529 392 aa12.99□□□□□ -0.33
LDLR-202ENST00000455727 RAB1AP62820 205 aa12.99□□□□□ -0.33
LDLR-202ENST00000455727 PRDX4Q13162 271 aa12.99□□□□□ -0.33
LDLR-202ENST00000455727 DAZAP2Q15038 168 aaPredicted RBP12.99□□□□□ -0.33
LDLR-202ENST00000455727 CEACAM21Q3KPI0 293 aa12.99□□□□□ -0.33
LDLR-202ENST00000455727 C9orf135Q5VTT2 229 aa12.99□□□□□ -0.33
LDLR-202ENST00000455727 POM121L2Q96KW2 1035 aa12.99□□□□□ -0.33
LDLR-202ENST00000455727 PAPOLGQ9BWT3 736 aaKnown RBP12.99□□□□□ -0.33
LDLR-202ENST00000455727 COQ3Q9NZJ6 369 aa12.99□□□□□ -0.33
LDLR-202ENST00000455727 TUBD1Q9UJT1 453 aa12.99□□□□□ -0.33
LDLR-202ENST00000455727 R4GN57 208 aa12.99□□□□□ -0.33
LDLR-202ENST00000455727 ZNF503-AS2A6NEH8 195 aa12.98□□□□□ -0.33
LDLR-202ENST00000455727 PCNX2A6NKB5 2137 aa12.98□□□□□ -0.33
LDLR-202ENST00000455727 LGALS8O00214 317 aa12.98□□□□□ -0.33
LDLR-202ENST00000455727 CCNOP22674 350 aa12.98□□□□□ -0.33
LDLR-202ENST00000455727 PIGPP57054 158 aa12.98□□□□□ -0.33
LDLR-202ENST00000455727 TAGLNQ01995 201 aaKnown RBP12.98□□□□□ -0.33
LDLR-202ENST00000455727 SRSF7Q16629 238 aaKnown RBP eCLIP12.98□□□□□ -0.33
LDLR-202ENST00000455727 Q6ZS49 121 aa12.98□□□□□ -0.33
LDLR-202ENST00000455727 MRPL21Q7Z2W9 205 aaKnown RBP12.98□□□□□ -0.33
LDLR-202ENST00000455727 MCEMP1Q8IX19 187 aa12.98□□□□□ -0.33
LDLR-202ENST00000455727 IL22RA1Q8N6P7 574 aa12.98□□□□□ -0.33
LDLR-202ENST00000455727 CNTNAP3BQ96NU0 1288 aa12.98□□□□□ -0.33
LDLR-202ENST00000455727 CNTNAP3Q9BZ76 1288 aa12.98□□□□□ -0.33
LDLR-202ENST00000455727 IFNA21P01568 189 aa12.97□□□□□ -0.33
LDLR-202ENST00000455727 NPBWR2P48146 333 aa12.97□□□□□ -0.33
LDLR-202ENST00000455727 PLP2Q04941 152 aa12.97□□□□□ -0.33
LDLR-202ENST00000455727 BRICD5Q6PL45 260 aa12.97□□□□□ -0.33
LDLR-202ENST00000455727 SLC22A25Q6T423 547 aa12.97□□□□□ -0.33
LDLR-202ENST00000455727 CCDC36Q8IYA8 594 aa12.97□□□□□ -0.33
LDLR-202ENST00000455727 ZDHHC23Q8IYP9 409 aa12.97□□□□□ -0.33
LDLR-202ENST00000455727 LRTM2Q8N967 370 aa12.97□□□□□ -0.33
LDLR-202ENST00000455727 NAXEQ8NCW5 288 aa12.97□□□□□ -0.33
LDLR-202ENST00000455727 BHLHE23Q8NDY6 225 aa12.97□□□□□ -0.33
LDLR-202ENST00000455727 MARS2Q96GW9 593 aaKnown RBP12.97□□□□□ -0.33
LDLR-202ENST00000455727 PIGMQ9H3S5 423 aa12.97□□□□□ -0.33
LDLR-202ENST00000455727 PLSCR2Q9NRY7 297 aa12.97□□□□□ -0.33
LDLR-202ENST00000455727 TMEM100Q9NV29 134 aa12.97□□□□□ -0.33
LDLR-202ENST00000455727 TAS2R3Q9NYW6 316 aa12.97□□□□□ -0.33
LDLR-202ENST00000455727 GSKIPQ9P0R6 139 aa12.97□□□□□ -0.33
LDLR-202ENST00000455727 MSGN1A6NI15 193 aa12.97□□□□□ -0.33
LDLR-202ENST00000455727 TEX46H3BTG2 121 aa12.97□□□□□ -0.33
LDLR-202ENST00000455727 TAAR5O14804 337 aa12.97□□□□□ -0.33
LDLR-202ENST00000455727 CD79AP11912 226 aa12.97□□□□□ -0.33
LDLR-202ENST00000455727 FCGR2CP31995 323 aa12.97□□□□□ -0.33
LDLR-202ENST00000455727 SOX8P57073 446 aa12.97□□□□□ -0.33
LDLR-202ENST00000455727 IAH1Q2TAA2 248 aaPredicted RBP12.97□□□□□ -0.33
LDLR-202ENST00000455727 NUFIP2Q7Z417 695 aaKnown RBP12.97□□□□□ -0.33
LDLR-202ENST00000455727 STPG2Q8N412 459 aa12.97□□□□□ -0.33
LDLR-202ENST00000455727 DYRK2Q92630 601 aa12.97□□□□□ -0.33
LDLR-202ENST00000455727 MOB3AQ96BX8 217 aa12.97□□□□□ -0.33
LDLR-202ENST00000455727 SUCNR1Q9BXA5 334 aa12.97□□□□□ -0.33
LDLR-202ENST00000455727 SLC5A7Q9GZV3 580 aa12.97□□□□□ -0.33
LDLR-202ENST00000455727 ZNF442Q9H7R0 627 aa12.97□□□□□ -0.33
LDLR-202ENST00000455727 NAA60Q9H7X0 242 aa12.97□□□□□ -0.33
LDLR-202ENST00000455727 GP6Q9HCN6 339 aa12.97□□□□□ -0.33
LDLR-202ENST00000455727 STARD10Q9Y365 291 aa12.97□□□□□ -0.33
LDLR-202ENST00000455727 OR7C1O76099 320 aaPredicted RBP12.96□□□□□ -0.33
LDLR-202ENST00000455727 FGF12P61328 243 aa12.96□□□□□ -0.33
LDLR-202ENST00000455727 ABCA11PQ4W5N1 156 aa12.96□□□□□ -0.33
LDLR-202ENST00000455727 UQCC3Q6UW78 93 aa12.96□□□□□ -0.33
LDLR-202ENST00000455727 OR5A2Q8NGI9 324 aa12.96□□□□□ -0.33
LDLR-202ENST00000455727 HPSE2Q8WWQ2 592 aa12.96□□□□□ -0.33
LDLR-202ENST00000455727 MICU1Q9BPX6 476 aa12.96□□□□□ -0.33
LDLR-202ENST00000455727 SYT3Q9BQG1 590 aa12.96□□□□□ -0.33
LDLR-202ENST00000455727 RAB19A4D1S5 217 aa12.96□□□□□ -0.34
LDLR-202ENST00000455727 CCL2P13500 99 aa12.96□□□□□ -0.34
LDLR-202ENST00000455727 TMEM187Q14656 261 aa12.96□□□□□ -0.34
LDLR-202ENST00000455727 GGNBP1Q5YKI7 109 aa12.96□□□□□ -0.34
LDLR-202ENST00000455727 PNPLA5Q7Z6Z6 429 aaPredicted RBP12.96□□□□□ -0.34
LDLR-202ENST00000455727 MKXQ8IYA7 352 aa12.96□□□□□ -0.34
LDLR-202ENST00000455727 RNF141Q8WVD5 230 aa12.96□□□□□ -0.34
LDLR-202ENST00000455727 RTN4IP1Q8WWV3 396 aaPredicted RBP12.96□□□□□ -0.34
LDLR-202ENST00000455727 TOMM40LQ969M1 308 aa12.96□□□□□ -0.34
LDLR-202ENST00000455727 FGF23Q9GZV9 251 aaPredicted RBP12.96□□□□□ -0.34
LDLR-202ENST00000455727 FAM221AA4D161 298 aa12.95□□□□□ -0.34
LDLR-202ENST00000455727 GLP1RP43220 463 aa12.95□□□□□ -0.34
LDLR-202ENST00000455727 HAAOP46952 286 aa12.95□□□□□ -0.34
LDLR-202ENST00000455727 EIF5AP63241 154 aaKnown RBP12.95□□□□□ -0.34
LDLR-202ENST00000455727 PXDC1Q5TGL8 231 aa12.95□□□□□ -0.34
LDLR-202ENST00000455727 ZNF585AQ6P3V2 769 aa12.95□□□□□ -0.34
LDLR-202ENST00000455727 Q6ZPA2 131 aa12.95□□□□□ -0.34
LDLR-202ENST00000455727 MARC2Q969Z3 335 aa12.95□□□□□ -0.34
LDLR-202ENST00000455727 WDYHV1Q96HA8 205 aa12.95□□□□□ -0.34
LDLR-202ENST00000455727 RSRP1Q9BUV0 290 aa12.95□□□□□ -0.34
LDLR-202ENST00000455727 BCL3P20749 454 aa12.95□□□□□ -0.34
LDLR-202ENST00000455727 GPM6AP51674 278 aa12.95□□□□□ -0.34
LDLR-202ENST00000455727 S100A10P60903 97 aa12.95□□□□□ -0.34
LDLR-202ENST00000455727 MPV17LQ2QL34 196 aa12.95□□□□□ -0.34
LDLR-202ENST00000455727 SLC2A9Q9NRM0 540 aa12.95□□□□□ -0.34
LDLR-202ENST00000455727 FAM86C1Q9NVL1 165 aa12.95□□□□□ -0.34
LDLR-202ENST00000455727 RCC2Q9P258 522 aaKnown RBP12.95□□□□□ -0.34
LDLR-202ENST00000455727 LIPGQ9Y5X9 500 aa12.95□□□□□ -0.34
LDLR-202ENST00000455727 SHANK1Q9Y566 2161 aa12.95□□□□□ -0.34
LDLR-202ENST00000455727 NUDT19A8MXV4 375 aa12.94□□□□□ -0.34
LDLR-202ENST00000455727 BET1O15155 118 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms