RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 H3BUX3 64 aa9.79□□□□□ -0.84
USP40-210ENST00000454354 TSPAN9O75954 239 aa9.79□□□□□ -0.84
USP40-210ENST00000454354 ALX3O95076 343 aa9.79□□□□□ -0.84
USP40-210ENST00000454354 HAND1O96004 215 aa9.79□□□□□ -0.84
USP40-210ENST00000454354 CYB5AP00167 134 aa9.79□□□□□ -0.84
USP40-210ENST00000454354 BCL3P20749 454 aa9.79□□□□□ -0.84
USP40-210ENST00000454354 TGFBR2P37173 567 aa9.79□□□□□ -0.84
USP40-210ENST00000454354 NPBWR2P48146 333 aa9.79□□□□□ -0.84
USP40-210ENST00000454354 POU3F4P49335 361 aa9.79□□□□□ -0.84
USP40-210ENST00000454354 BMXP51813 675 aa9.79□□□□□ -0.84
USP40-210ENST00000454354 PROK1P58294 105 aa9.79□□□□□ -0.84
USP40-210ENST00000454354 PDZK1IP1Q13113 114 aa9.79□□□□□ -0.84
USP40-210ENST00000454354 LPCAT4Q643R3 524 aa9.79□□□□□ -0.84
USP40-210ENST00000454354 CRIP3Q6Q6R5 217 aa9.79□□□□□ -0.84
USP40-210ENST00000454354 GDPD3Q7L5L3 318 aa9.79□□□□□ -0.84
USP40-210ENST00000454354 TCF23Q7RTU1 214 aa9.79□□□□□ -0.84
USP40-210ENST00000454354 FAM58AQ8N1B3 248 aa9.79□□□□□ -0.84
USP40-210ENST00000454354 ZNF676Q8N7Q3 588 aa9.79□□□□□ -0.84
USP40-210ENST00000454354 OR52I1Q8NGK6 324 aa9.79□□□□□ -0.84
USP40-210ENST00000454354 OR13C3Q8NGS6 347 aa9.79□□□□□ -0.84
USP40-210ENST00000454354 ISG20L2Q9H9L3 353 aaKnown RBP9.79□□□□□ -0.84
USP40-210ENST00000454354 RHOFQ9HBH0 211 aa9.79□□□□□ -0.84
USP40-210ENST00000454354 AMBNQ9NP70 447 aa9.79□□□□□ -0.84
USP40-210ENST00000454354 SMPD3Q9NY59 655 aaPredicted RBP9.79□□□□□ -0.84
USP40-210ENST00000454354 RNF114Q9Y508 228 aa9.79□□□□□ -0.84
USP40-210ENST00000454354 IGKV1-12A0A0C4DH73 117 aa9.78□□□□□ -0.84
USP40-210ENST00000454354 FAM90A8PA6NJQ4 464 aa9.78□□□□□ -0.84
USP40-210ENST00000454354 TMEM212A6NML5 194 aa9.78□□□□□ -0.84
USP40-210ENST00000454354 ODF3BA8MYP8 253 aa9.78□□□□□ -0.84
USP40-210ENST00000454354 PSPNO60542 156 aa9.78□□□□□ -0.84
USP40-210ENST00000454354 WBP4O75554 376 aaKnown RBP9.78□□□□□ -0.84
USP40-210ENST00000454354 KDM4BO94953 1096 aa9.78□□□□□ -0.84
USP40-210ENST00000454354 INMTO95050 263 aa9.78□□□□□ -0.84
USP40-210ENST00000454354 ZFPL1O95159 310 aa9.78□□□□□ -0.84
USP40-210ENST00000454354 IGKV1D-12P01611 117 aa9.78□□□□□ -0.84
USP40-210ENST00000454354 CCDC159P0C7I6 412 aa9.78□□□□□ -0.84
USP40-210ENST00000454354 LIMS3P0CW19 117 aa9.78□□□□□ -0.84
USP40-210ENST00000454354 LIMS4P0CW20 117 aa9.78□□□□□ -0.84
USP40-210ENST00000454354 ZNF728P0DKX0 622 aa9.78□□□□□ -0.84
USP40-210ENST00000454354 PIPP12273 146 aaPredicted RBP9.78□□□□□ -0.84
USP40-210ENST00000454354 EDDM3BP56851 147 aa9.78□□□□□ -0.84
USP40-210ENST00000454354 KRTAP10-3P60369 221 aa9.78□□□□□ -0.84
USP40-210ENST00000454354 LRRC75BQ2VPJ9 315 aa9.78□□□□□ -0.84
USP40-210ENST00000454354 KLHL22Q53GT1 634 aa9.78□□□□□ -0.84
USP40-210ENST00000454354 ZNF782Q6ZMW2 699 aaPredicted RBP9.78□□□□□ -0.84
USP40-210ENST00000454354 SAXO1Q8IYX7 474 aa9.78□□□□□ -0.84
USP40-210ENST00000454354 PARP16Q8N5Y8 322 aa9.78□□□□□ -0.84
USP40-210ENST00000454354 OR13C9Q8NGT0 318 aa9.78□□□□□ -0.84
USP40-210ENST00000454354 ZNF714Q96N38 554 aa9.78□□□□□ -0.84
USP40-210ENST00000454354 SSX3Q99909 188 aa9.78□□□□□ -0.84
USP40-210ENST00000454354 ZCCHC4Q9H5U6 513 aa9.78□□□□□ -0.84
USP40-210ENST00000454354 HMG20AQ9NP66 347 aa9.78□□□□□ -0.84
USP40-210ENST00000454354 FGF20Q9NP95 211 aaPredicted RBP9.78□□□□□ -0.84
USP40-210ENST00000454354 LINC00312Q9Y6C7 94 aa9.78□□□□□ -0.84
USP40-210ENST00000454354 hADV38S2A0JD32 116 aa9.77□□□□□ -0.85
USP40-210ENST00000454354 VGLL3A8MV65 326 aa9.77□□□□□ -0.85
USP40-210ENST00000454354 E9PI62 339 aa9.77□□□□□ -0.85
USP40-210ENST00000454354 MGST3O14880 152 aa9.77□□□□□ -0.85
USP40-210ENST00000454354 IGHV1-8P0DP01 117 aa9.77□□□□□ -0.85
USP40-210ENST00000454354 PRKACAP17612 351 aa9.77□□□□□ -0.85
USP40-210ENST00000454354 COX7A1P24310 79 aa9.77□□□□□ -0.85
USP40-210ENST00000454354 PEX2P28328 305 aa9.77□□□□□ -0.85
USP40-210ENST00000454354 OR3A1P47881 315 aa9.77□□□□□ -0.85
USP40-210ENST00000454354 SRSF4Q08170 494 aaKnown RBP9.77□□□□□ -0.85
USP40-210ENST00000454354 GRK1Q15835 563 aa9.77□□□□□ -0.85
USP40-210ENST00000454354 ZNF626Q68DY1 528 aa9.77□□□□□ -0.85
USP40-210ENST00000454354 BRICD5Q6PL45 260 aa9.77□□□□□ -0.85
USP40-210ENST00000454354 TREML4Q6UXN2 200 aa9.77□□□□□ -0.85
USP40-210ENST00000454354 LIAT1Q6ZQX7 453 aa9.77□□□□□ -0.85
USP40-210ENST00000454354 RNF144BQ7Z419 303 aa9.77□□□□□ -0.85
USP40-210ENST00000454354 ZNF555Q8NEP9 628 aa9.77□□□□□ -0.85
USP40-210ENST00000454354 OR11H6Q8NGC7 330 aa9.77□□□□□ -0.85
USP40-210ENST00000454354 OR52N4Q8NGI2 321 aa9.77□□□□□ -0.85
USP40-210ENST00000454354 OR13D1Q8NGV5 346 aa9.77□□□□□ -0.85
USP40-210ENST00000454354 OR5AK2Q8NH90 309 aa9.77□□□□□ -0.85
USP40-210ENST00000454354 RPS4Y2Q8TD47 263 aa9.77□□□□□ -0.85
USP40-210ENST00000454354 STMN2Q93045 179 aa9.77□□□□□ -0.85
USP40-210ENST00000454354 RFT1Q96AA3 541 aa9.77□□□□□ -0.85
USP40-210ENST00000454354 COMMD4Q9H0A8 199 aa9.77□□□□□ -0.85
USP40-210ENST00000454354 NEK6Q9HC98 313 aa9.77□□□□□ -0.85
USP40-210ENST00000454354 TBL2Q9Y4P3 447 aaKnown RBP9.77□□□□□ -0.85
USP40-210ENST00000454354 SULT1B1O43704 296 aa9.76□□□□□ -0.85
USP40-210ENST00000454354 BAG2O95816 211 aa9.76□□□□□ -0.85
USP40-210ENST00000454354 OCM2P0CE71 109 aa9.76□□□□□ -0.85
USP40-210ENST00000454354 OCMP0CE72 109 aaPredicted RBP9.76□□□□□ -0.85
USP40-210ENST00000454354 GABRR1P24046 479 aa9.76□□□□□ -0.85
USP40-210ENST00000454354 LMO1P25800 156 aa9.76□□□□□ -0.85
USP40-210ENST00000454354 ERP29P30040 261 aaKnown RBP9.76□□□□□ -0.85
USP40-210ENST00000454354 GBX2P52951 348 aaPredicted RBP9.76□□□□□ -0.85
USP40-210ENST00000454354 P2RX3P56373 397 aa9.76□□□□□ -0.85
USP40-210ENST00000454354 LGALS4P56470 323 aa9.76□□□□□ -0.85
USP40-210ENST00000454354 ZP1P60852 638 aa9.76□□□□□ -0.85
USP40-210ENST00000454354 EDDM3AQ14507 147 aa9.76□□□□□ -0.85
USP40-210ENST00000454354 SMN1Q16637 294 aaKnown RBP9.76□□□□□ -0.85
USP40-210ENST00000454354 CCDC58Q4VC31 144 aa9.76□□□□□ -0.85
USP40-210ENST00000454354 ZNF691Q5VV52 312 aa9.76□□□□□ -0.85
USP40-210ENST00000454354 ZNF529Q6P280 563 aa9.76□□□□□ -0.85
USP40-210ENST00000454354 LHFPL4Q7Z7J7 247 aa9.76□□□□□ -0.85
USP40-210ENST00000454354 SERPINA12Q8IW75 414 aa9.76□□□□□ -0.85
USP40-210ENST00000454354 PACRGLQ8N7B6 248 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms