RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 TNFRSF14Q92956 283 aa12.46□□□□□ -0.41
LIMS3-201ENST00000437679 CPNE2Q96FN4 548 aaPredicted RBP12.46□□□□□ -0.41
LIMS3-201ENST00000437679 SNX22Q96L94 193 aa12.46□□□□□ -0.41
LIMS3-201ENST00000437679 UNKLQ9H9P5 680 aaKnown RBP12.46□□□□□ -0.41
LIMS3-201ENST00000437679 SEBOXQ9HB31 216 aaPredicted RBP12.46□□□□□ -0.41
LIMS3-201ENST00000437679 PLCXD1Q9NUJ7 323 aa12.46□□□□□ -0.41
LIMS3-201ENST00000437679 PSORS1C1Q9UIG5 152 aa12.46□□□□□ -0.41
LIMS3-201ENST00000437679 A0A0U1RQK1 487 aa12.45□□□□□ -0.42
LIMS3-201ENST00000437679 NPFFO15130 113 aa12.45□□□□□ -0.42
LIMS3-201ENST00000437679 XPNPEP2O43895 674 aa12.45□□□□□ -0.42
LIMS3-201ENST00000437679 ZNF737O75373 536 aa12.45□□□□□ -0.42
LIMS3-201ENST00000437679 MELTFP08582 738 aa12.45□□□□□ -0.42
LIMS3-201ENST00000437679 HKR1P10072 659 aa12.45□□□□□ -0.42
LIMS3-201ENST00000437679 UBE2E1P51965 193 aa12.45□□□□□ -0.42
LIMS3-201ENST00000437679 SNU13P55769 128 aaKnown RBP12.45□□□□□ -0.42
LIMS3-201ENST00000437679 DLX1P56177 255 aa12.45□□□□□ -0.42
LIMS3-201ENST00000437679 KISS1Q15726 138 aa12.45□□□□□ -0.42
LIMS3-201ENST00000437679 SPIN3Q5JUX0 258 aa12.45□□□□□ -0.42
LIMS3-201ENST00000437679 C16orf87Q6PH81 154 aa12.45□□□□□ -0.42
LIMS3-201ENST00000437679 AHSA2Q719I0 299 aa12.45□□□□□ -0.42
LIMS3-201ENST00000437679 SAXO1Q8IYX7 474 aa12.45□□□□□ -0.42
LIMS3-201ENST00000437679 OR8H2Q8N162 312 aa12.45□□□□□ -0.42
LIMS3-201ENST00000437679 PIP4P2Q8N4L2 257 aa12.45□□□□□ -0.42
LIMS3-201ENST00000437679 TMEM86BQ8N661 226 aa12.45□□□□□ -0.42
LIMS3-201ENST00000437679 ZSCAN4Q8NAM6 433 aaPredicted RBP12.45□□□□□ -0.42
LIMS3-201ENST00000437679 FBLIM1Q8WUP2 373 aa12.45□□□□□ -0.42
LIMS3-201ENST00000437679 SSMEM1Q8WWF3 244 aa12.45□□□□□ -0.42
LIMS3-201ENST00000437679 RGP1Q92546 391 aaPredicted RBP12.45□□□□□ -0.42
LIMS3-201ENST00000437679 SMIM19Q96E16 107 aa12.45□□□□□ -0.42
LIMS3-201ENST00000437679 RHOFQ9HBH0 211 aa12.45□□□□□ -0.42
LIMS3-201ENST00000437679 TNFRSF19Q9NS68 423 aa12.45□□□□□ -0.42
LIMS3-201ENST00000437679 IL36RNQ9UBH0 155 aa12.45□□□□□ -0.42
LIMS3-201ENST00000437679 ZNF281Q9Y2X9 895 aa12.45□□□□□ -0.42
LIMS3-201ENST00000437679 SF3B6Q9Y3B4 125 aaKnown RBP12.45□□□□□ -0.42
LIMS3-201ENST00000437679 PCDHGB5Q9Y5G0 923 aa12.45□□□□□ -0.42
LIMS3-201ENST00000437679 A0A1W2PRD5 423 aa12.44□□□□□ -0.42
LIMS3-201ENST00000437679 A0A1W2PRF3 423 aa12.44□□□□□ -0.42
LIMS3-201ENST00000437679 A0A1W2PRM7 423 aa12.44□□□□□ -0.42
LIMS3-201ENST00000437679 H0YJX3 145 aa12.44□□□□□ -0.42
LIMS3-201ENST00000437679 SH2D1BO14796 132 aa12.44□□□□□ -0.42
LIMS3-201ENST00000437679 MYL12BO14950 172 aa12.44□□□□□ -0.42
LIMS3-201ENST00000437679 KDM4BO94953 1096 aa12.44□□□□□ -0.42
LIMS3-201ENST00000437679 FBP1P09467 338 aa12.44□□□□□ -0.42
LIMS3-201ENST00000437679 TMEM225BP0DP42 221 aa12.44□□□□□ -0.42
LIMS3-201ENST00000437679 CALCBP10092 127 aa12.44□□□□□ -0.42
LIMS3-201ENST00000437679 GABRR1P24046 479 aa12.44□□□□□ -0.42
LIMS3-201ENST00000437679 DUSP1P28562 367 aa12.44□□□□□ -0.42
LIMS3-201ENST00000437679 EDDM3BP56851 147 aa12.44□□□□□ -0.42
LIMS3-201ENST00000437679 TAS2R43P59537 309 aa12.44□□□□□ -0.42
LIMS3-201ENST00000437679 ACSM1Q08AH1 577 aa12.44□□□□□ -0.42
LIMS3-201ENST00000437679 FOXL1Q12952 345 aa12.44□□□□□ -0.42
LIMS3-201ENST00000437679 ZNF146Q15072 292 aa12.44□□□□□ -0.42
LIMS3-201ENST00000437679 LAIR2Q6ISS4 152 aa12.44□□□□□ -0.42
LIMS3-201ENST00000437679 RNF144BQ7Z419 303 aa12.44□□□□□ -0.42
LIMS3-201ENST00000437679 C3orf56Q8N813 242 aa12.44□□□□□ -0.42
LIMS3-201ENST00000437679 PPP1R35Q8TAP8 253 aa12.44□□□□□ -0.42
LIMS3-201ENST00000437679 TMEM106AQ96A25 262 aa12.44□□□□□ -0.42
LIMS3-201ENST00000437679 GPER1Q99527 375 aa12.44□□□□□ -0.42
LIMS3-201ENST00000437679 HEXA-AS1Q9H8Q6 139 aa12.44□□□□□ -0.42
LIMS3-201ENST00000437679 HMG20AQ9NP66 347 aa12.44□□□□□ -0.42
LIMS3-201ENST00000437679 TAS2R4Q9NYW5 299 aa12.44□□□□□ -0.42
LIMS3-201ENST00000437679 GSTK1Q9Y2Q3 226 aa12.44□□□□□ -0.42
LIMS3-201ENST00000437679 POMT1Q9Y6A1 747 aa12.44□□□□□ -0.42
LIMS3-201ENST00000437679 SIRT4Q9Y6E7 314 aaPredicted RBP12.44□□□□□ -0.42
LIMS3-201ENST00000437679 IGKV1-12A0A0C4DH73 117 aa12.43□□□□□ -0.42
LIMS3-201ENST00000437679 TMEM82A0PJX8 343 aa12.43□□□□□ -0.42
LIMS3-201ENST00000437679 MEIOCA2RUB1 952 aa12.43□□□□□ -0.42
LIMS3-201ENST00000437679 PAHP00439 452 aa12.43□□□□□ -0.42
LIMS3-201ENST00000437679 LALBAP00709 142 aa12.43□□□□□ -0.42
LIMS3-201ENST00000437679 IGKV1D-12P01611 117 aa12.43□□□□□ -0.42
LIMS3-201ENST00000437679 CRYBA1P05813 215 aa12.43□□□□□ -0.42
LIMS3-201ENST00000437679 CCL3L1P16619 93 aa12.43□□□□□ -0.42
LIMS3-201ENST00000437679 AQP4P55087 323 aa12.43□□□□□ -0.42
LIMS3-201ENST00000437679 ERVFRD-1P60508 538 aa12.43□□□□□ -0.42
LIMS3-201ENST00000437679 PPP3R1P63098 170 aa12.43□□□□□ -0.42
LIMS3-201ENST00000437679 EDDM3AQ14507 147 aa12.43□□□□□ -0.42
LIMS3-201ENST00000437679 ZNF273Q14593 569 aa12.43□□□□□ -0.42
LIMS3-201ENST00000437679 GRK1Q15835 563 aa12.43□□□□□ -0.42
LIMS3-201ENST00000437679 AWAT1Q58HT5 328 aa12.43□□□□□ -0.42
LIMS3-201ENST00000437679 DMKNQ6E0U4 476 aaPredicted RBP12.43□□□□□ -0.42
LIMS3-201ENST00000437679 ZNF529Q6P280 563 aa12.43□□□□□ -0.42
LIMS3-201ENST00000437679 C17orf107Q6ZR85 190 aa12.43□□□□□ -0.42
LIMS3-201ENST00000437679 SATL1Q86VE3 508 aa12.43□□□□□ -0.42
LIMS3-201ENST00000437679 LDLRAD3Q86YD5 345 aa12.43□□□□□ -0.42
LIMS3-201ENST00000437679 NRG4Q8WWG1 115 aa12.43□□□□□ -0.42
LIMS3-201ENST00000437679 GHSRQ92847 366 aa12.43□□□□□ -0.42
LIMS3-201ENST00000437679 VCX3BQ9H321 246 aa12.43□□□□□ -0.42
LIMS3-201ENST00000437679 DPAGT1Q9H3H5 408 aa12.43□□□□□ -0.42
LIMS3-201ENST00000437679 EXOSC4Q9NPD3 245 aaKnown RBP12.43□□□□□ -0.42
LIMS3-201ENST00000437679 ANK2Q01484 3957 aa12.43□□□□□ -0.42
LIMS3-201ENST00000437679 DSCAML1Q8TD84 2053 aa12.42□□□□□ -0.42
LIMS3-201ENST00000437679 hADV38S2A0JD32 116 aa12.42□□□□□ -0.42
LIMS3-201ENST00000437679 H0YHG0 523 aa12.42□□□□□ -0.42
LIMS3-201ENST00000437679 C21orf33P30042 268 aaPredicted RBP12.42□□□□□ -0.42
LIMS3-201ENST00000437679 SAA4P35542 130 aa12.42□□□□□ -0.42
LIMS3-201ENST00000437679 BMXP51813 675 aa12.42□□□□□ -0.42
LIMS3-201ENST00000437679 ZP1P60852 638 aa12.42□□□□□ -0.42
LIMS3-201ENST00000437679 MEF2CQ06413 473 aaPredicted RBP12.42□□□□□ -0.42
LIMS3-201ENST00000437679 YIF1BQ5BJH7 314 aa12.42□□□□□ -0.42
LIMS3-201ENST00000437679 CRIP3Q6Q6R5 217 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms