RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 ACAA1P09110 424 aaPredicted RBP6.44□□□□□ -1.38
VPS53-204ENST00000437048 FAM109BQ6ICB4 259 aaPredicted RBP6.44□□□□□ -1.38
VPS53-204ENST00000437048 MRPL30Q8TCC3 161 aaKnown RBP6.44□□□□□ -1.38
VPS53-204ENST00000437048 PTPMT1Q8WUK0 201 aaPredicted RBP6.44□□□□□ -1.38
VPS53-204ENST00000437048 TAS2R4Q9NYW5 299 aa6.44□□□□□ -1.38
VPS53-204ENST00000437048 P2RY10O00398 339 aa6.44□□□□□ -1.38
VPS53-204ENST00000437048 BCAT2O15382 392 aaPredicted RBP6.44□□□□□ -1.38
VPS53-204ENST00000437048 OR4A8P0C604 315 aa6.44□□□□□ -1.38
VPS53-204ENST00000437048 RACK1P63244 317 aaKnown RBP6.44□□□□□ -1.38
VPS53-204ENST00000437048 C6orf132Q5T0Z8 1188 aa6.44□□□□□ -1.38
VPS53-204ENST00000437048 MYPOPQ86VE0 399 aaPredicted RBP6.44□□□□□ -1.38
VPS53-204ENST00000437048 MUC20Q8N307 709 aaPredicted RBP6.44□□□□□ -1.38
VPS53-204ENST00000437048 OR10G3Q8NGC4 313 aa6.44□□□□□ -1.38
VPS53-204ENST00000437048 CFAP20Q9Y6A4 193 aaKnown RBP6.44□□□□□ -1.38
VPS53-204ENST00000437048 ALS2Q96Q42 1657 aa6.44□□□□□ -1.38
VPS53-204ENST00000437048 TNFSF12-TNFSF13A0A0A6YY99 330 aa6.44□□□□□ -1.38
VPS53-204ENST00000437048 A0A0B4J293 547 aa6.44□□□□□ -1.38
VPS53-204ENST00000437048 TNFSF12O43508 249 aa6.44□□□□□ -1.38
VPS53-204ENST00000437048 FAM24BQ8N5W8 94 aa6.44□□□□□ -1.38
VPS53-204ENST00000437048 MDGA1Q8NFP4 955 aa6.44□□□□□ -1.38
VPS53-204ENST00000437048 OR10AG1Q8NH19 301 aa6.44□□□□□ -1.38
VPS53-204ENST00000437048 HHIPQ96QV1 700 aa6.44□□□□□ -1.38
VPS53-204ENST00000437048 PDCD1LG2Q9BQ51 273 aa6.44□□□□□ -1.38
VPS53-204ENST00000437048 NEU3Q9UQ49 428 aa6.44□□□□□ -1.38
VPS53-204ENST00000437048 ITGB4P16144 1822 aa6.44□□□□□ -1.38
VPS53-204ENST00000437048 PLPP1O14494 284 aa6.44□□□□□ -1.38
VPS53-204ENST00000437048 PTP4A3O75365 173 aa6.44□□□□□ -1.38
VPS53-204ENST00000437048 PCBP3P57721 371 aaKnown RBP6.44□□□□□ -1.38
VPS53-204ENST00000437048 ASCL5Q7RTU5 278 aa6.44□□□□□ -1.38
VPS53-204ENST00000437048 TMPRSS9Q7Z410 1059 aa6.44□□□□□ -1.38
VPS53-204ENST00000437048 VASH2Q86V25 355 aa6.44□□□□□ -1.38
VPS53-204ENST00000437048 FAM169BQ8N8A8 192 aa6.44□□□□□ -1.38
VPS53-204ENST00000437048 OR5M1Q8NGP8 315 aa6.44□□□□□ -1.38
VPS53-204ENST00000437048 FBXL17Q9UF56 701 aa6.44□□□□□ -1.38
VPS53-204ENST00000437048 ADAMTS5Q9UNA0 930 aa6.44□□□□□ -1.38
VPS53-204ENST00000437048 CARHSP1Q9Y2V2 147 aaKnown RBP6.44□□□□□ -1.38
VPS53-204ENST00000437048 HMX2A2RU54 273 aa6.44□□□□□ -1.38
VPS53-204ENST00000437048 ADAP1O75689 374 aa6.44□□□□□ -1.38
VPS53-204ENST00000437048 P01737 135 aa6.44□□□□□ -1.38
VPS53-204ENST00000437048 MRPL58Q14197 206 aaKnown RBP6.44□□□□□ -1.38
VPS53-204ENST00000437048 KCNMB1Q16558 191 aa6.44□□□□□ -1.38
VPS53-204ENST00000437048 IER2Q9BTL4 223 aa6.44□□□□□ -1.38
VPS53-204ENST00000437048 TMEFF2Q9UIK5 374 aaPredicted RBP6.44□□□□□ -1.38
VPS53-204ENST00000437048 MS4A6EQ96DS6 147 aa6.44□□□□□ -1.38
VPS53-204ENST00000437048 PBOV1Q9GZY1 135 aa6.44□□□□□ -1.38
VPS53-204ENST00000437048 PSMB2P49721 201 aa6.44□□□□□ -1.38
VPS53-204ENST00000437048 ST3GAL2Q16842 350 aa6.44□□□□□ -1.38
VPS53-204ENST00000437048 RPL30P62888 115 aaKnown RBP6.43□□□□□ -1.38
VPS53-204ENST00000437048 HES1Q14469 280 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 MBD3L1Q8WWY6 194 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 NPIPB13A6NJU9 1138 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 NPIPB4C9JG80 1138 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 SYNGR2O43760 224 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 CFIP05156 583 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 TCF24Q7RTU0 167 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 SLC7A10Q9NS82 523 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 C1RLQ9NZP8 487 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 KCNE1BA0A087WTH5 132 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 SRSF9Q13242 221 aaKnown RBP eCLIP6.43□□□□□ -1.38
VPS53-204ENST00000437048 OR10X1Q8NGY0 326 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 NUDT8Q8WV74 236 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 PRELID3AQ96N28 172 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 WNT6Q9Y6F9 365 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 CACNA1HO95180 2353 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 TRPM3Q9HCF6 1732 aaPredicted RBP6.43□□□□□ -1.38
VPS53-204ENST00000437048 SCGB1A1P11684 91 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 ZNF718Q3SXZ3 478 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 CLDN16Q9Y5I7 305 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 IFNL4K9M1U5 179 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 FSTP19883 344 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 FMODQ06828 376 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 ZNF770Q6IQ21 691 aaPredicted RBP6.43□□□□□ -1.38
VPS53-204ENST00000437048 OR10G4Q8NGN3 311 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 OR10G9Q8NGN4 311 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 OR10G7Q8NGN6 311 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 GABRG3Q99928 467 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 GGACTQ9BVM4 153 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 DECR2Q9NUI1 292 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 MRPS2Q9Y399 296 aaKnown RBP6.43□□□□□ -1.38
VPS53-204ENST00000437048 C1QTNF9BB2RNN3 333 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 ZNF468Q5VIY5 522 aaPredicted RBP6.43□□□□□ -1.38
VPS53-204ENST00000437048 PNKDQ8N490 385 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 TMEM255BQ8WV15 326 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 TPPP3Q9BW30 176 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 DDA1Q9BW61 102 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 ECM29Q5VYK3 1845 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 RBBP6Q7Z6E9 1792 aaKnown RBP6.43□□□□□ -1.38
VPS53-204ENST00000437048 HOXD9P28356 352 aaPredicted RBP6.43□□□□□ -1.38
VPS53-204ENST00000437048 PECRQ9BY49 303 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 TUBD1Q9UJT1 453 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 A0A1W2PP55 124 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 APCSP02743 223 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 F13BP05160 661 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 GPR3P46089 330 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 CYB561P49447 251 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 CLDN12P56749 244 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 CLDN17P56750 224 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 SLC35B1P78383 322 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 PTOV1Q86YD1 416 aa6.43□□□□□ -1.38
VPS53-204ENST00000437048 NXF5Q9H1B4 397 aaKnown RBP6.43□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 108.2 ms