RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 ZSCAN4Q8NAM6 433 aaPredicted RBP9.45□□□□□ -0.9
COL28A1-203ENST00000435823 OR13C5Q8NGS8 318 aa9.45□□□□□ -0.9
COL28A1-203ENST00000435823 THRSPQ92748 146 aa9.45□□□□□ -0.9
COL28A1-203ENST00000435823 PGLYRP3Q96LB9 341 aa9.45□□□□□ -0.9
COL28A1-203ENST00000435823 FAM234AQ9H0X4 552 aa9.45□□□□□ -0.9
COL28A1-203ENST00000435823 SIRPDQ9H106 197 aa9.45□□□□□ -0.9
COL28A1-203ENST00000435823 Q9H521 79 aa9.45□□□□□ -0.9
COL28A1-203ENST00000435823 ELL3Q9HB65 397 aaPredicted RBP9.45□□□□□ -0.9
COL28A1-203ENST00000435823 RHOFQ9HBH0 211 aa9.45□□□□□ -0.9
COL28A1-203ENST00000435823 TMEM138Q9NPI0 162 aa9.45□□□□□ -0.9
COL28A1-203ENST00000435823 RBFOX1Q9NWB1 397 aaKnown RBP9.45□□□□□ -0.9
COL28A1-203ENST00000435823 BLOC1S6Q9UL45 172 aa9.45□□□□□ -0.9
COL28A1-203ENST00000435823 RRP15Q9Y3B9 282 aaKnown RBP9.45□□□□□ -0.9
COL28A1-203ENST00000435823 TK1P04183 234 aa9.44□□□□□ -0.9
COL28A1-203ENST00000435823 ALDOBP05062 364 aa9.44□□□□□ -0.9
COL28A1-203ENST00000435823 SFTPBP07988 381 aa9.44□□□□□ -0.9
COL28A1-203ENST00000435823 MMP9P14780 707 aa9.44□□□□□ -0.9
COL28A1-203ENST00000435823 MAPK3P27361 379 aaPredicted RBP9.44□□□□□ -0.9
COL28A1-203ENST00000435823 BDKRB2P30411 391 aa9.44□□□□□ -0.9
COL28A1-203ENST00000435823 NPBWR2P48146 333 aa9.44□□□□□ -0.9
COL28A1-203ENST00000435823 SNU13P55769 128 aaKnown RBP9.44□□□□□ -0.9
COL28A1-203ENST00000435823 HILS1P60008 231 aa9.44□□□□□ -0.9
COL28A1-203ENST00000435823 ZP1P60852 638 aa9.44□□□□□ -0.9
COL28A1-203ENST00000435823 ACSM1Q08AH1 577 aa9.44□□□□□ -0.9
COL28A1-203ENST00000435823 SPHARQ15513 63 aa9.44□□□□□ -0.9
COL28A1-203ENST00000435823 MED22Q15528 200 aa9.44□□□□□ -0.9
COL28A1-203ENST00000435823 RBM48Q5RL73 367 aaKnown RBP9.44□□□□□ -0.9
COL28A1-203ENST00000435823 ZNF529Q6P280 563 aa9.44□□□□□ -0.9
COL28A1-203ENST00000435823 C9orf139Q6ZV77 190 aa9.44□□□□□ -0.9
COL28A1-203ENST00000435823 VMO1Q7Z5L0 202 aa9.44□□□□□ -0.9
COL28A1-203ENST00000435823 OR51A2Q8NGJ7 313 aa9.44□□□□□ -0.9
COL28A1-203ENST00000435823 PPP1R35Q8TAP8 253 aa9.44□□□□□ -0.9
COL28A1-203ENST00000435823 TBC1D15Q8TC07 691 aa9.44□□□□□ -0.9
COL28A1-203ENST00000435823 LHX4Q969G2 390 aa9.44□□□□□ -0.9
COL28A1-203ENST00000435823 TBX15Q96SF7 602 aa9.44□□□□□ -0.9
COL28A1-203ENST00000435823 CCDC90BQ9GZT6 254 aa9.44□□□□□ -0.9
COL28A1-203ENST00000435823 FAM192AQ9GZU8 254 aa9.44□□□□□ -0.9
COL28A1-203ENST00000435823 DUSP21Q9H596 190 aa9.44□□□□□ -0.9
COL28A1-203ENST00000435823 SEBOXQ9HB31 216 aaPredicted RBP9.44□□□□□ -0.9
COL28A1-203ENST00000435823 HMG20AQ9NP66 347 aa9.44□□□□□ -0.9
COL28A1-203ENST00000435823 PAK1IP1Q9NWT1 392 aaPredicted RBP9.44□□□□□ -0.9
COL28A1-203ENST00000435823 ATRQ13535 2644 aa9.44□□□□□ -0.9
COL28A1-203ENST00000435823 IGKV1-12A0A0C4DH73 117 aa9.43□□□□□ -0.9
COL28A1-203ENST00000435823 K7N7A8 449 aa9.43□□□□□ -0.9
COL28A1-203ENST00000435823 M0R1W7 72 aa9.43□□□□□ -0.9
COL28A1-203ENST00000435823 SH2D1BO14796 132 aa9.43□□□□□ -0.9
COL28A1-203ENST00000435823 IGKV1D-12P01611 117 aa9.43□□□□□ -0.9
COL28A1-203ENST00000435823 CALCBP10092 127 aa9.43□□□□□ -0.9
COL28A1-203ENST00000435823 GABRR1P24046 479 aa9.43□□□□□ -0.9
COL28A1-203ENST00000435823 CRHBPP24387 322 aa9.43□□□□□ -0.9
COL28A1-203ENST00000435823 EEF1B2P24534 225 aaKnown RBP9.43□□□□□ -0.9
COL28A1-203ENST00000435823 BMXP51813 675 aa9.43□□□□□ -0.9
COL28A1-203ENST00000435823 RPL31P62899 125 aaKnown RBP9.43□□□□□ -0.9
COL28A1-203ENST00000435823 SRSF2Q01130 221 aaKnown RBP9.43□□□□□ -0.9
COL28A1-203ENST00000435823 IRF3Q14653 427 aa9.43□□□□□ -0.9
COL28A1-203ENST00000435823 ZNF146Q15072 292 aa9.43□□□□□ -0.9
COL28A1-203ENST00000435823 DDI2Q5TDH0 399 aa9.43□□□□□ -0.9
COL28A1-203ENST00000435823 ASPHD2Q6ICH7 369 aa9.43□□□□□ -0.9
COL28A1-203ENST00000435823 GDPD3Q7L5L3 318 aa9.43□□□□□ -0.9
COL28A1-203ENST00000435823 RNF144BQ7Z419 303 aa9.43□□□□□ -0.9
COL28A1-203ENST00000435823 MS4A15Q8N5U1 240 aa9.43□□□□□ -0.9
COL28A1-203ENST00000435823 PXT1Q8NFP0 134 aa9.43□□□□□ -0.9
COL28A1-203ENST00000435823 OR52N4Q8NGI2 321 aa9.43□□□□□ -0.9
COL28A1-203ENST00000435823 OR5D13Q8NGL4 314 aa9.43□□□□□ -0.9
COL28A1-203ENST00000435823 TNFAIP8L1Q8WVP5 186 aa9.43□□□□□ -0.9
COL28A1-203ENST00000435823 SGCDQ92629 289 aa9.43□□□□□ -0.9
COL28A1-203ENST00000435823 SNX22Q96L94 193 aa9.43□□□□□ -0.9
COL28A1-203ENST00000435823 OR14A2Q96R54 314 aa9.43□□□□□ -0.9
COL28A1-203ENST00000435823 S100A13Q99584 98 aa9.43□□□□□ -0.9
COL28A1-203ENST00000435823 ZNF184Q99676 751 aaPredicted RBP9.43□□□□□ -0.9
COL28A1-203ENST00000435823 MDFIQ99750 246 aa9.43□□□□□ -0.9
COL28A1-203ENST00000435823 EXOSC4Q9NPD3 245 aaKnown RBP9.43□□□□□ -0.9
COL28A1-203ENST00000435823 C19orf12Q9NSK7 152 aa9.43□□□□□ -0.9
COL28A1-203ENST00000435823 GSTK1Q9Y2Q3 226 aa9.43□□□□□ -0.9
COL28A1-203ENST00000435823 TRBV5-7A0A0A0MS05 114 aa9.42□□□□□ -0.9
COL28A1-203ENST00000435823 IGHV1-69DA0A0B4J2H0 117 aa9.42□□□□□ -0.9
COL28A1-203ENST00000435823 CENPVL3A0A0U1RRI6 287 aa9.42□□□□□ -0.9
COL28A1-203ENST00000435823 hCG_1809904A0A1W2PP81 198 aa9.42□□□□□ -0.9
COL28A1-203ENST00000435823 A0A1W2PPE2 198 aa9.42□□□□□ -0.9
COL28A1-203ENST00000435823 A0A1W2PR64 198 aa9.42□□□□□ -0.9
COL28A1-203ENST00000435823 A0A1W2PRV1 198 aa9.42□□□□□ -0.9
COL28A1-203ENST00000435823 TRIM77I1YAP6 450 aa9.42□□□□□ -0.9
COL28A1-203ENST00000435823 GABRPO00591 440 aa9.42□□□□□ -0.9
COL28A1-203ENST00000435823 ZNF737O75373 536 aa9.42□□□□□ -0.9
COL28A1-203ENST00000435823 GPX5O75715 221 aa9.42□□□□□ -0.9
COL28A1-203ENST00000435823 VENTXO95231 258 aa9.42□□□□□ -0.9
COL28A1-203ENST00000435823 IGHV1-69P01742 117 aa9.42□□□□□ -0.9
COL28A1-203ENST00000435823 FSTP19883 344 aa9.42□□□□□ -0.9
COL28A1-203ENST00000435823 DUSP1P28562 367 aa9.42□□□□□ -0.9
COL28A1-203ENST00000435823 ZNF93P35789 620 aaPredicted RBP9.42□□□□□ -0.9
COL28A1-203ENST00000435823 TGFBR2P37173 567 aa9.42□□□□□ -0.9
COL28A1-203ENST00000435823 MTNR1BP49286 362 aa9.42□□□□□ -0.9
COL28A1-203ENST00000435823 EDDM3BP56851 147 aa9.42□□□□□ -0.9
COL28A1-203ENST00000435823 RPS11P62280 158 aaKnown RBP eCLIP9.42□□□□□ -0.9
COL28A1-203ENST00000435823 GUCA2AQ02747 115 aa9.42□□□□□ -0.9
COL28A1-203ENST00000435823 RSU1Q15404 277 aa9.42□□□□□ -0.9
COL28A1-203ENST00000435823 RUSC1-AS1Q66K80 236 aa9.42□□□□□ -0.9
COL28A1-203ENST00000435823 NCR3LG1Q68D85 454 aa9.42□□□□□ -0.9
COL28A1-203ENST00000435823 CRIP3Q6Q6R5 217 aa9.42□□□□□ -0.9
COL28A1-203ENST00000435823 BRD3OSQ6XYD6 125 aa9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms