RNA–Protein interactions for RNA: ENST00000414963.2

SF3B1-204, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SF3B1, Length 651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-204ENST00000414963 CYB5R3P00387 301 aaPredicted RBP11.96□□□□□ -0.49
SF3B1-204ENST00000414963 HLA-DQB1P01920 261 aa11.96□□□□□ -0.49
SF3B1-204ENST00000414963 GLAP06280 429 aa11.96□□□□□ -0.49
SF3B1-204ENST00000414963 DAOP14920 347 aa11.96□□□□□ -0.49
SF3B1-204ENST00000414963 LMO1P25800 156 aa11.96□□□□□ -0.49
SF3B1-204ENST00000414963 PTH2RP49190 550 aa11.96□□□□□ -0.49
SF3B1-204ENST00000414963 VEGFCP49767 419 aa11.96□□□□□ -0.49
SF3B1-204ENST00000414963 TMEM50BP56557 158 aa11.96□□□□□ -0.49
SF3B1-204ENST00000414963 TAF9Q16594 264 aa11.96□□□□□ -0.49
SF3B1-204ENST00000414963 MOGAT2Q3SYC2 334 aa11.96□□□□□ -0.49
SF3B1-204ENST00000414963 SIGIRRQ6IA17 410 aa11.96□□□□□ -0.49
SF3B1-204ENST00000414963 Q6P435 159 aa11.96□□□□□ -0.49
SF3B1-204ENST00000414963 C15orf40Q8WUR7 153 aa11.96□□□□□ -0.49
SF3B1-204ENST00000414963 PHF21AQ96BD5 680 aa11.96□□□□□ -0.49
SF3B1-204ENST00000414963 TSC22D3Q99576 134 aa11.96□□□□□ -0.49
SF3B1-204ENST00000414963 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.96□□□□□ -0.49
SF3B1-204ENST00000414963 DCAF16Q9NXF7 216 aa11.96□□□□□ -0.49
SF3B1-204ENST00000414963 TREM2Q9NZC2 230 aa11.96□□□□□ -0.49
SF3B1-204ENST00000414963 RCC2Q9P258 522 aaKnown RBP11.96□□□□□ -0.49
SF3B1-204ENST00000414963 NLKQ9UBE8 527 aa11.96□□□□□ -0.49
SF3B1-204ENST00000414963 IL36RNQ9UBH0 155 aa11.96□□□□□ -0.49
SF3B1-204ENST00000414963 GLS2Q9UI32 602 aa11.96□□□□□ -0.49
SF3B1-204ENST00000414963 HSF4Q9ULV5 492 aa11.96□□□□□ -0.49
SF3B1-204ENST00000414963 EDARQ9UNE0 448 aa11.96□□□□□ -0.49
SF3B1-204ENST00000414963 V9GYH0 126 aa11.96□□□□□ -0.49
SF3B1-204ENST00000414963 PTPN13Q12923 2485 aa11.96□□□□□ -0.5
SF3B1-204ENST00000414963 DSCAMO60469 2012 aa11.95□□□□□ -0.5
SF3B1-204ENST00000414963 CLDN25C9JDP6 229 aa11.95□□□□□ -0.5
SF3B1-204ENST00000414963 C3orf80F5H4A9 247 aa11.95□□□□□ -0.5
SF3B1-204ENST00000414963 LGALS8O00214 317 aa11.95□□□□□ -0.5
SF3B1-204ENST00000414963 SH2D1BO14796 132 aa11.95□□□□□ -0.5
SF3B1-204ENST00000414963 MELTFP08582 738 aa11.95□□□□□ -0.5
SF3B1-204ENST00000414963 FUT3P21217 361 aa11.95□□□□□ -0.5
SF3B1-204ENST00000414963 CHATP28329 748 aa11.95□□□□□ -0.5
SF3B1-204ENST00000414963 BLVRBP30043 206 aaPredicted RBP11.95□□□□□ -0.5
SF3B1-204ENST00000414963 TMEM33P57088 247 aa11.95□□□□□ -0.5
SF3B1-204ENST00000414963 ARL6IP1Q15041 203 aa11.95□□□□□ -0.5
SF3B1-204ENST00000414963 PLAC9Q5JTB6 97 aa11.95□□□□□ -0.5
SF3B1-204ENST00000414963 TMEM69Q5SWH9 247 aa11.95□□□□□ -0.5
SF3B1-204ENST00000414963 ATPAF1Q5TC12 328 aaPredicted RBP11.95□□□□□ -0.5
SF3B1-204ENST00000414963 BATF2Q8N1L9 274 aa11.95□□□□□ -0.5
SF3B1-204ENST00000414963 RAB3CQ96E17 227 aa11.95□□□□□ -0.5
SF3B1-204ENST00000414963 LIME1Q9H400 295 aa11.95□□□□□ -0.5
SF3B1-204ENST00000414963 SPACA1Q9HBV2 294 aa11.95□□□□□ -0.5
SF3B1-204ENST00000414963 MYOZ1Q9NP98 299 aaPredicted RBP11.95□□□□□ -0.5
SF3B1-204ENST00000414963 WIPI2Q9Y4P8 454 aa11.95□□□□□ -0.5
SF3B1-204ENST00000414963 CELSR2Q9HCU4 2923 aa11.95□□□□□ -0.5
SF3B1-204ENST00000414963 CRYBG3Q68DQ2 2970 aa11.94□□□□□ -0.5
SF3B1-204ENST00000414963 CHD3Q12873 2000 aaKnown RBP11.94□□□□□ -0.5
SF3B1-204ENST00000414963 TACC2O95359 2948 aa11.94□□□□□ -0.5
SF3B1-204ENST00000414963 IGKV1D-17A0A075B6S4 117 aa11.94□□□□□ -0.5
SF3B1-204ENST00000414963 TRAV18A0A075B6X5 111 aa11.94□□□□□ -0.5
SF3B1-204ENST00000414963 PPIAL4EA0A075B759 164 aa11.94□□□□□ -0.5
SF3B1-204ENST00000414963 TRAV38-1A0A0B4J264 116 aa11.94□□□□□ -0.5
SF3B1-204ENST00000414963 OOEPA6NGQ2 149 aa11.94□□□□□ -0.5
SF3B1-204ENST00000414963 OR2AT4A6NND4 320 aa11.94□□□□□ -0.5
SF3B1-204ENST00000414963 PPIAL4DF5H284 164 aa11.94□□□□□ -0.5
SF3B1-204ENST00000414963 TNFRSF13BO14836 293 aaPredicted RBP11.94□□□□□ -0.5
SF3B1-204ENST00000414963 DEGS1O15121 323 aa11.94□□□□□ -0.5
SF3B1-204ENST00000414963 PDCD6O75340 191 aa11.94□□□□□ -0.5
SF3B1-204ENST00000414963 CA11O75493 328 aa11.94□□□□□ -0.5
SF3B1-204ENST00000414963 HAND1O96004 215 aa11.94□□□□□ -0.5
SF3B1-204ENST00000414963 GSTP1P09211 210 aaKnown RBP11.94□□□□□ -0.5
SF3B1-204ENST00000414963 PPIAL4FP0DN26 164 aa11.94□□□□□ -0.5
SF3B1-204ENST00000414963 PSG2P11465 335 aa11.94□□□□□ -0.5
SF3B1-204ENST00000414963 HIST1H1DP16402 221 aaKnown RBP11.94□□□□□ -0.5
SF3B1-204ENST00000414963 GABRR1P24046 479 aa11.94□□□□□ -0.5
SF3B1-204ENST00000414963 PRDX2P32119 198 aa11.94□□□□□ -0.5
SF3B1-204ENST00000414963 CD80P33681 288 aa11.94□□□□□ -0.5
SF3B1-204ENST00000414963 RBMXP38159 391 aaKnown RBP11.94□□□□□ -0.5
SF3B1-204ENST00000414963 TAS2R20P59543 309 aa11.94□□□□□ -0.5
SF3B1-204ENST00000414963 KRTAP10-9P60411 292 aa11.94□□□□□ -0.5
SF3B1-204ENST00000414963 HOXA4Q00056 320 aaPredicted RBP11.94□□□□□ -0.5
SF3B1-204ENST00000414963 PITPNAQ00169 270 aa11.94□□□□□ -0.5
SF3B1-204ENST00000414963 MICBQ29980 383 aa11.94□□□□□ -0.5
SF3B1-204ENST00000414963 ZNF260Q3ZCT1 412 aa11.94□□□□□ -0.5
SF3B1-204ENST00000414963 FAM201AQ5SY85 155 aa11.94□□□□□ -0.5
SF3B1-204ENST00000414963 STUMQ69YW2 141 aa11.94□□□□□ -0.5
SF3B1-204ENST00000414963 PYHIN1Q6K0P9 492 aa11.94□□□□□ -0.5
SF3B1-204ENST00000414963 FAM131AQ6UXB0 335 aa11.94□□□□□ -0.5
SF3B1-204ENST00000414963 Q6ZTK2 550 aa11.94□□□□□ -0.5
SF3B1-204ENST00000414963 BOLLQ8N9W6 283 aaKnown RBP11.94□□□□□ -0.5
SF3B1-204ENST00000414963 CHST4Q8NCG5 386 aa11.94□□□□□ -0.5
SF3B1-204ENST00000414963 ANGPTL6Q8NI99 470 aa11.94□□□□□ -0.5
SF3B1-204ENST00000414963 SEH1LQ96EE3 360 aa11.94□□□□□ -0.5
SF3B1-204ENST00000414963 NEDD4LQ96PU5 975 aa11.94□□□□□ -0.5
SF3B1-204ENST00000414963 ABHD1Q96SE0 405 aa11.94□□□□□ -0.5
SF3B1-204ENST00000414963 DNTTIP1Q9H147 329 aa11.94□□□□□ -0.5
SF3B1-204ENST00000414963 AUNIPQ9H7T9 357 aa11.94□□□□□ -0.5
SF3B1-204ENST00000414963 CHODLQ9H9P2 273 aa11.94□□□□□ -0.5
SF3B1-204ENST00000414963 BARX1Q9HBU1 254 aaPredicted RBP11.94□□□□□ -0.5
SF3B1-204ENST00000414963 DNAJB11Q9UBS4 358 aa11.94□□□□□ -0.5
SF3B1-204ENST00000414963 ZNF222Q9UK12 451 aa11.94□□□□□ -0.5
SF3B1-204ENST00000414963 PPIAL4AQ9Y536 164 aa11.94□□□□□ -0.5
SF3B1-204ENST00000414963 FBN2P35556 2912 aa11.94□□□□□ -0.5
SF3B1-204ENST00000414963 TRAV24A0A0B4J272 114 aa11.93□□□□□ -0.5
SF3B1-204ENST00000414963 A0A0G2JMP0 313 aa11.93□□□□□ -0.5
SF3B1-204ENST00000414963 A0A0X1KG70 313 aa11.93□□□□□ -0.5
SF3B1-204ENST00000414963 RFPL4AA6NLU0 287 aa11.93□□□□□ -0.5
SF3B1-204ENST00000414963 RFPL4AL1F8VTS6 287 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 151 ms