RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 EPOPA6NHQ4 379 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 A6NLC8 198 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 TRDCB7Z8K6 153 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 M0R135 149 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 HSPA12AO43301 675 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 SYNGR3O43761 229 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 KNG1P01042 644 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 SRP19P09132 144 aaKnown RBP4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 OR5AC1P0C628 307 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 ZNF806P0C7X5 589 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 SERPINA2P20848 420 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 GUCA1AP43080 201 aaPredicted RBP4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 CSNK1A1P48729 337 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 EWSR1Q01844 656 aaKnown RBP eCLIP4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 GNMTQ14749 295 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 HYAL4Q2M3T9 481 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 SOHLH1Q5JUK2 328 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 FAM209BQ5JX69 171 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 RBMS3Q6XE24 437 aaKnown RBP4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 COMMD2Q86X83 199 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 C20orf196Q8IYI0 205 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 OR14L1PQ8NHC6 308 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 RELTQ969Z4 430 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 SPSB4Q96A44 273 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 ZNF799Q96GE5 643 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 TOLLIPQ9H0E2 274 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 TMEM222Q9H0R3 208 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 WDR54Q9H977 334 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 SH2D2AQ9NP31 389 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 FGF21Q9NSA1 209 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 C19orf25Q9UFG5 118 aaPredicted RBP4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 AK3Q9UIJ7 227 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 MYO7BQ6PIF6 2116 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 TRBV6-6A0A0A6YYG2 114 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 A0A1W2PPE3 182 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 SEC14L6B5MCN3 397 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 ZNF814B7Z6K7 855 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 HSD17B6O14756 317 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 DHHO43323 396 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 GMFGO60234 142 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 IFNA10P01566 189 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 RAB2AP61019 212 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 ID3Q02535 119 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 CHD9Q3L8U1 2897 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 ABCA11PQ4W5N1 156 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 FBXW12Q6X9E4 464 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 GALNTL5Q7Z4T8 443 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 C6orf201Q7Z4U5 140 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 CPEB2Q7Z5Q1 589 aaKnown RBP4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 WDSUB1Q8N9V3 476 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 SMRP1Q8NCR6 262 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 EDARADDQ8WWZ3 215 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 SGK3Q96BR1 496 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 DUSP15Q9H1R2 295 aaPredicted RBP4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 CERS4Q9HA82 394 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 ZNF701Q9NV72 531 aaPredicted RBP4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 PRR13Q9NZ81 148 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 KLRF1Q9NZS2 232 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 MIOXQ9UGB7 285 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 RNF150Q9ULK6 438 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 PIGLQ9Y2B2 252 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 LSM5Q9Y4Y9 91 aaKnown RBP4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 SLCO1B1Q9Y6L6 691 aa4.98□□□□□ -1.61
CCDC88A-203ENST00000412148 TRBV11-1A0A0K0K1C0 115 aa4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 FAM230AA0A1W2PPH8 454 aa4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 H3BML4 177 aa4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 TP53I11O14683 189 aa4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 PDCD6O75340 191 aa4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 OR2C1O95371 312 aa4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 SNRNP70P08621 437 aaKnown RBP4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 CTXN2P0C2S0 81 aa4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 TMEM225BP0DP42 221 aa4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 ANOS1P23352 680 aa4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 CDAP32320 146 aa4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 NPBWR2P48146 333 aa4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 RBP2P50120 134 aa4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 FUT6P51993 359 aa4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 IL24Q13007 206 aa4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 LBHQ53QV2 105 aaPredicted RBP4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 RIPPLY2Q5TAB7 128 aa4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 ZNF574Q6ZN55 896 aaPredicted RBP4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 LINC00596Q86U02 117 aa4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 MAML2Q8IZL2 1156 aaPredicted RBP4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 ZNF565Q8N9K5 539 aa4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 SUMF2Q8NBJ7 301 aa4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 P2RX4Q99571 388 aa4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 GGACTQ9BVM4 153 aa4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 EIF5A2Q9GZV4 153 aaKnown RBP4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 CHCHD2Q9Y6H1 151 aaPredicted RBP4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 CHD7Q9P2D1 2997 aa4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 CCDC187A0A096LP49 1063 aa4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 LRP5LA4QPB2 252 aa4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 GJE1A6NN92 205 aa4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 M0R036 132 aa4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 MPPED1O15442 326 aa4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 NME2P1O60361 137 aa4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 TUSC2O75896 110 aa4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 FAHP16930 419 aa4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 GLIPR1P48060 266 aa4.97□□□□□ -1.61
CCDC88A-203ENST00000412148 DSCR4P56555 118 aaPredicted RBP4.97□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms