RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 ZNF724A8MTY0 619 aa18.2■□□□□ 0.5
CTCF-202ENST00000401394 PLXDC1Q8IUK5 500 aa18.2■□□□□ 0.5
CTCF-202ENST00000401394 ZNF700Q9H0M5 742 aa18.2■□□□□ 0.5
CTCF-202ENST00000401394 NELFAQ9H3P2 528 aa18.2■□□□□ 0.5
CTCF-202ENST00000401394 FAM86C1Q9NVL1 165 aa18.2■□□□□ 0.5
CTCF-202ENST00000401394 H3BP45 60 aa18.2■□□□□ 0.5
CTCF-202ENST00000401394 CD63P08962 238 aa18.2■□□□□ 0.5
CTCF-202ENST00000401394 EIF2S3P41091 472 aaKnown RBP18.2■□□□□ 0.5
CTCF-202ENST00000401394 HIST3H3Q16695 136 aa18.2■□□□□ 0.5
CTCF-202ENST00000401394 SOHLH1Q5JUK2 328 aa18.2■□□□□ 0.5
CTCF-202ENST00000401394 NABP1Q96AH0 204 aa18.2■□□□□ 0.5
CTCF-202ENST00000401394 TM2D1Q9BX74 207 aa18.2■□□□□ 0.5
CTCF-202ENST00000401394 HS3ST3B1Q9Y662 390 aa18.2■□□□□ 0.5
CTCF-202ENST00000401394 NPIPB13A6NJU9 1138 aa18.19■□□□□ 0.5
CTCF-202ENST00000401394 NPIPB4C9JG80 1138 aa18.19■□□□□ 0.5
CTCF-202ENST00000401394 PIAS2O75928 621 aa18.19■□□□□ 0.5
CTCF-202ENST00000401394 AADACP22760 399 aa18.19■□□□□ 0.5
CTCF-202ENST00000401394 ERVFRD-1P60508 538 aa18.19■□□□□ 0.5
CTCF-202ENST00000401394 RNF212Q495C1 297 aa18.19■□□□□ 0.5
CTCF-202ENST00000401394 C4orf17Q53FE4 359 aa18.19■□□□□ 0.5
CTCF-202ENST00000401394 OR2G3Q8NGZ4 309 aa18.19■□□□□ 0.5
CTCF-202ENST00000401394 GINS3Q9BRX5 216 aa18.19■□□□□ 0.5
CTCF-202ENST00000401394 EXPH5Q8NEV8 1989 aa18.19■□□□□ 0.5
CTCF-202ENST00000401394 SSSCA1O60232 199 aa18.19■□□□□ 0.5
CTCF-202ENST00000401394 MSR1P21757 451 aa18.19■□□□□ 0.5
CTCF-202ENST00000401394 CD27P26842 260 aa18.19■□□□□ 0.5
CTCF-202ENST00000401394 ATP6V0CP27449 155 aa18.19■□□□□ 0.5
CTCF-202ENST00000401394 EWSR1Q01844 656 aaKnown RBP eCLIP18.19■□□□□ 0.5
CTCF-202ENST00000401394 OR2B11Q5JQS5 317 aa18.19■□□□□ 0.5
CTCF-202ENST00000401394 RASL10BQ96S79 203 aa18.19■□□□□ 0.5
CTCF-202ENST00000401394 ARV1Q9H2C2 271 aa18.19■□□□□ 0.5
CTCF-202ENST00000401394 LMAN1LQ9HAT1 526 aa18.19■□□□□ 0.5
CTCF-202ENST00000401394 KCNIP3Q9Y2W7 256 aa18.19■□□□□ 0.5
CTCF-202ENST00000401394 DUX1O43812 170 aa18.18■□□□□ 0.5
CTCF-202ENST00000401394 TMEM50AO95807 157 aa18.18■□□□□ 0.5
CTCF-202ENST00000401394 UNQ6494/PRO21346Q6UXR6 183 aa18.18■□□□□ 0.5
CTCF-202ENST00000401394 SLC16A14Q7RTX9 510 aa18.18■□□□□ 0.5
CTCF-202ENST00000401394 SUMF2Q8NBJ7 301 aa18.18■□□□□ 0.5
CTCF-202ENST00000401394 Q8WTZ3 238 aa18.18■□□□□ 0.5
CTCF-202ENST00000401394 RAB39BQ96DA2 213 aa18.18■□□□□ 0.5
CTCF-202ENST00000401394 TAAR9Q96RI9 348 aa18.18■□□□□ 0.5
CTCF-202ENST00000401394 SEC11BP0C7V7 166 aa18.18■□□□□ 0.5
CTCF-202ENST00000401394 NPBWR2P48146 333 aa18.18■□□□□ 0.5
CTCF-202ENST00000401394 RND3P61587 244 aa18.18■□□□□ 0.5
CTCF-202ENST00000401394 GRB2P62993 217 aaKnown RBP18.18■□□□□ 0.5
CTCF-202ENST00000401394 FGFBP3Q8TAT2 258 aa18.18■□□□□ 0.5
CTCF-202ENST00000401394 PAPOLGQ9BWT3 736 aaKnown RBP18.18■□□□□ 0.5
CTCF-202ENST00000401394 GLRX2Q9NS18 164 aa18.18■□□□□ 0.5
CTCF-202ENST00000401394 V9GYS6 101 aa18.18■□□□□ 0.5
CTCF-202ENST00000401394 FREM1Q5H8C1 2179 aa18.18■□□□□ 0.5
CTCF-202ENST00000401394 GPR137BO60478 399 aa18.18■□□□□ 0.5
CTCF-202ENST00000401394 IGLV3-19P01714 112 aa18.18■□□□□ 0.5
CTCF-202ENST00000401394 IGHV3-9P01782 118 aa18.18■□□□□ 0.5
CTCF-202ENST00000401394 KLK3P07288 261 aaPredicted RBP18.18■□□□□ 0.5
CTCF-202ENST00000401394 HNRNPKP61978 463 aaKnown RBP eCLIP18.18■□□□□ 0.5
CTCF-202ENST00000401394 IL36RNQ9UBH0 155 aa18.18■□□□□ 0.5
CTCF-202ENST00000401394 SLC7A11Q9UPY5 501 aa18.18■□□□□ 0.5
CTCF-202ENST00000401394 BORCS7-ASMTA0A0B4J1R7 106 aa18.17■□□□□ 0.5
CTCF-202ENST00000401394 AQP7P3A6NL99 342 aa18.17■□□□□ 0.5
CTCF-202ENST00000401394 H3BQ15 152 aa18.17■□□□□ 0.5
CTCF-202ENST00000401394 IGLV3-1P01715 115 aa18.17■□□□□ 0.5
CTCF-202ENST00000401394 GUCA1AP43080 201 aaPredicted RBP18.17■□□□□ 0.5
CTCF-202ENST00000401394 SURF2Q15527 256 aaPredicted RBP18.17■□□□□ 0.5
CTCF-202ENST00000401394 IGFBP7Q16270 282 aa18.17■□□□□ 0.5
CTCF-202ENST00000401394 LIAT1Q6ZQX7 453 aa18.17■□□□□ 0.5
CTCF-202ENST00000401394 CYB561D1Q8N8Q1 229 aa18.17■□□□□ 0.5
CTCF-202ENST00000401394 OR1J1Q8NGS3 322 aa18.17■□□□□ 0.5
CTCF-202ENST00000401394 C18orf12Q96KH6 178 aa18.17■□□□□ 0.5
CTCF-202ENST00000401394 C8orf33Q9H7E9 229 aaPredicted RBP18.17■□□□□ 0.5
CTCF-202ENST00000401394 UCK1Q9HA47 277 aa18.17■□□□□ 0.5
CTCF-202ENST00000401394 PLEKHA2Q9HB19 425 aa18.17■□□□□ 0.5
CTCF-202ENST00000401394 DUSP1P28562 367 aa18.17■□□□□ 0.5
CTCF-202ENST00000401394 ZNF674Q2M3X9 581 aa18.17■□□□□ 0.5
CTCF-202ENST00000401394 RAET1LQ5VY80 246 aa18.17■□□□□ 0.5
CTCF-202ENST00000401394 SLC23A3Q6PIS1 610 aa18.17■□□□□ 0.5
CTCF-202ENST00000401394 SPSB3Q6PJ21 355 aa18.17■□□□□ 0.5
CTCF-202ENST00000401394 HEPN1Q6WQI6 88 aa18.17■□□□□ 0.5
CTCF-202ENST00000401394 ALKBH3Q96Q83 286 aaPredicted RBP18.17■□□□□ 0.5
CTCF-202ENST00000401394 DOK5Q9P104 306 aa18.17■□□□□ 0.5
CTCF-202ENST00000401394 HSFX4A0A1B0GTS1 333 aaPredicted RBP18.16■□□□□ 0.5
CTCF-202ENST00000401394 HSFX3A0A1B0GWH4 333 aaPredicted RBP18.16■□□□□ 0.5
CTCF-202ENST00000401394 K7N7A8 449 aa18.16■□□□□ 0.5
CTCF-202ENST00000401394 LCATP04180 440 aa18.16■□□□□ 0.5
CTCF-202ENST00000401394 RGS19P49795 217 aa18.16■□□□□ 0.5
CTCF-202ENST00000401394 HIST2H3AQ71DI3 136 aa18.16■□□□□ 0.5
CTCF-202ENST00000401394 GJC3Q8NFK1 279 aa18.16■□□□□ 0.5
CTCF-202ENST00000401394 TCTEX1D2Q8WW35 142 aa18.16■□□□□ 0.5
CTCF-202ENST00000401394 NECAP2Q9NVZ3 263 aa18.16■□□□□ 0.5
CTCF-202ENST00000401394 ST3GAL6Q9Y274 331 aa18.16■□□□□ 0.5
CTCF-202ENST00000401394 TNFSF11O14788 317 aa18.16■□□□□ 0.5
CTCF-202ENST00000401394 ST8SIA3O43173 380 aa18.16■□□□□ 0.5
CTCF-202ENST00000401394 B4GALT1P15291 398 aa18.16■□□□□ 0.5
CTCF-202ENST00000401394 TAGLN2P37802 199 aaKnown RBP18.16■□□□□ 0.5
CTCF-202ENST00000401394 SPIN3Q5JUX0 258 aa18.16■□□□□ 0.5
CTCF-202ENST00000401394 FAM180AQ6UWF9 173 aa18.16■□□□□ 0.5
CTCF-202ENST00000401394 ODF3L1Q8IXM7 274 aa18.16■□□□□ 0.5
CTCF-202ENST00000401394 HSF4Q9ULV5 492 aa18.16■□□□□ 0.5
CTCF-202ENST00000401394 PAX6P26367 422 aa18.15■□□□□ 0.5
CTCF-202ENST00000401394 RAB30Q15771 203 aa18.15■□□□□ 0.5
CTCF-202ENST00000401394 CALHM1Q8IU99 346 aa18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms