RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 PRDM13Q9H4Q3 707 aa8.23□□□□□ -1.09
COL28A1-201ENST00000399429 TANC1Q9C0D5 1861 aa8.23□□□□□ -1.09
COL28A1-201ENST00000399429 UBE2L5PA0A1B0GUS4 154 aa8.23□□□□□ -1.09
COL28A1-201ENST00000399429 LRP5LA4QPB2 252 aa8.23□□□□□ -1.09
COL28A1-201ENST00000399429 CHST1O43916 411 aa8.23□□□□□ -1.09
COL28A1-201ENST00000399429 GUSBP08236 651 aa8.23□□□□□ -1.09
COL28A1-201ENST00000399429 DTYMKP23919 212 aa8.23□□□□□ -1.09
COL28A1-201ENST00000399429 CCL20P78556 96 aa8.23□□□□□ -1.09
COL28A1-201ENST00000399429 HSF1Q00613 529 aa8.23□□□□□ -1.09
COL28A1-201ENST00000399429 DLX2Q07687 328 aaPredicted RBP8.23□□□□□ -1.09
COL28A1-201ENST00000399429 SGCBQ16585 318 aa8.23□□□□□ -1.09
COL28A1-201ENST00000399429 PDLIM3Q53GG5 364 aaPredicted RBP8.23□□□□□ -1.09
COL28A1-201ENST00000399429 SAPCD1Q5SSQ6 148 aa8.23□□□□□ -1.09
COL28A1-201ENST00000399429 PLCXD3Q63HM9 321 aa8.23□□□□□ -1.09
COL28A1-201ENST00000399429 CCL4L1Q8NHW4 92 aa8.23□□□□□ -1.09
COL28A1-201ENST00000399429 MCTS1Q9ULC4 181 aaKnown RBP8.23□□□□□ -1.09
COL28A1-201ENST00000399429 STARD10Q9Y365 291 aa8.23□□□□□ -1.09
COL28A1-201ENST00000399429 ARL2-SNX15V9GYD0 113 aa8.23□□□□□ -1.09
COL28A1-201ENST00000399429 KIF26BQ2KJY2 2108 aa8.22□□□□□ -1.09
COL28A1-201ENST00000399429 IGKV1-8A0A0C4DH67 115 aa8.22□□□□□ -1.09
COL28A1-201ENST00000399429 A0A1B0GWJ7 208 aa8.22□□□□□ -1.09
COL28A1-201ENST00000399429 DUXBA0A1W2PPF3 345 aa8.22□□□□□ -1.09
COL28A1-201ENST00000399429 NKX2-6A6NCS4 301 aa8.22□□□□□ -1.09
COL28A1-201ENST00000399429 F6UZH7 168 aa8.22□□□□□ -1.09
COL28A1-201ENST00000399429 FCN1O00602 326 aa8.22□□□□□ -1.09
COL28A1-201ENST00000399429 ADH1BP00325 375 aa8.22□□□□□ -1.09
COL28A1-201ENST00000399429 HOXC4P09017 264 aaPredicted RBP8.22□□□□□ -1.09
COL28A1-201ENST00000399429 PTGER4P35408 488 aa8.22□□□□□ -1.09
COL28A1-201ENST00000399429 NOGQ13253 232 aa8.22□□□□□ -1.09
COL28A1-201ENST00000399429 H1FNTQ75WM6 255 aaPredicted RBP8.22□□□□□ -1.09
COL28A1-201ENST00000399429 C1QL4Q86Z23 238 aa8.22□□□□□ -1.09
COL28A1-201ENST00000399429 BMPERQ8N8U9 685 aa8.22□□□□□ -1.09
COL28A1-201ENST00000399429 DMBX1Q8NFW5 382 aa8.22□□□□□ -1.09
COL28A1-201ENST00000399429 OR4X1Q8NH49 305 aa8.22□□□□□ -1.09
COL28A1-201ENST00000399429 APH1AQ96BI3 265 aa8.22□□□□□ -1.09
COL28A1-201ENST00000399429 HINT2Q9BX68 163 aa8.22□□□□□ -1.09
COL28A1-201ENST00000399429 HS3ST3B1Q9Y662 390 aa8.22□□□□□ -1.09
COL28A1-201ENST00000399429 A8MWP6 167 aa8.22□□□□□ -1.09
COL28A1-201ENST00000399429 HRKO00198 91 aa8.22□□□□□ -1.09
COL28A1-201ENST00000399429 TRAF3IP2O43734 574 aaPredicted RBP8.22□□□□□ -1.09
COL28A1-201ENST00000399429 AMBPP02760 352 aa8.22□□□□□ -1.09
COL28A1-201ENST00000399429 HLA-GP17693 338 aa8.22□□□□□ -1.09
COL28A1-201ENST00000399429 WNT5AP41221 380 aa8.22□□□□□ -1.09
COL28A1-201ENST00000399429 GABRA2P47869 451 aa8.22□□□□□ -1.09
COL28A1-201ENST00000399429 CNN3Q15417 329 aaKnown RBP8.22□□□□□ -1.09
COL28A1-201ENST00000399429 CSRP2Q16527 193 aa8.22□□□□□ -1.09
COL28A1-201ENST00000399429 VAX1Q5SQQ9 334 aa8.22□□□□□ -1.09
COL28A1-201ENST00000399429 LIAT1Q6ZQX7 453 aa8.22□□□□□ -1.09
COL28A1-201ENST00000399429 CA13Q8N1Q1 262 aa8.22□□□□□ -1.09
COL28A1-201ENST00000399429 ZNF738Q8NE65 137 aa8.22□□□□□ -1.09
COL28A1-201ENST00000399429 CD99L2Q8TCZ2 262 aa8.22□□□□□ -1.09
COL28A1-201ENST00000399429 CORO2AQ92828 525 aa8.22□□□□□ -1.09
COL28A1-201ENST00000399429 PSENENQ9NZ42 101 aa8.22□□□□□ -1.09
COL28A1-201ENST00000399429 VAX2Q9UIW0 290 aa8.22□□□□□ -1.09
COL28A1-201ENST00000399429 BRCA1P38398 1863 aaKnown RBP8.22□□□□□ -1.09
COL28A1-201ENST00000399429 LNP1A1A4G5 178 aa8.22□□□□□ -1.09
COL28A1-201ENST00000399429 TOX4O94842 621 aa8.22□□□□□ -1.09
COL28A1-201ENST00000399429 SRP19P09132 144 aaKnown RBP8.22□□□□□ -1.09
COL28A1-201ENST00000399429 NPSP0C0P6 89 aa8.22□□□□□ -1.09
COL28A1-201ENST00000399429 TGFBR3Q03167 851 aa8.22□□□□□ -1.09
COL28A1-201ENST00000399429 FBXO46Q6PJ61 603 aaPredicted RBP8.22□□□□□ -1.09
COL28A1-201ENST00000399429 OR52M1Q8NGK5 317 aa8.22□□□□□ -1.09
COL28A1-201ENST00000399429 SLC46A1Q96NT5 459 aa8.22□□□□□ -1.09
COL28A1-201ENST00000399429 KIR3DX1Q9H7L2 352 aa8.22□□□□□ -1.09
COL28A1-201ENST00000399429 ANXA10Q9UJ72 324 aa8.22□□□□□ -1.09
COL28A1-201ENST00000399429 ZNF646O15015 1829 aaPredicted RBP8.22□□□□□ -1.09
COL28A1-201ENST00000399429 TRPM6Q9BX84 2022 aa8.22□□□□□ -1.09
COL28A1-201ENST00000399429 OR4A8P0C604 315 aa8.21□□□□□ -1.09
COL28A1-201ENST00000399429 OR5G3P0C626 314 aa8.21□□□□□ -1.09
COL28A1-201ENST00000399429 BCL2P10415 239 aa8.21□□□□□ -1.09
COL28A1-201ENST00000399429 PRSS12P56730 875 aa8.21□□□□□ -1.09
COL28A1-201ENST00000399429 CD226Q15762 336 aa8.21□□□□□ -1.09
COL28A1-201ENST00000399429 TMEM176BQ3YBM2 270 aaPredicted RBP8.21□□□□□ -1.09
COL28A1-201ENST00000399429 PTCRAQ6ISU1 281 aaPredicted RBP8.21□□□□□ -1.09
COL28A1-201ENST00000399429 TCTEX1D1Q8N7M0 179 aa8.21□□□□□ -1.09
COL28A1-201ENST00000399429 POC1BQ8TC44 478 aa8.21□□□□□ -1.09
COL28A1-201ENST00000399429 RLN3Q8WXF3 142 aa8.21□□□□□ -1.09
COL28A1-201ENST00000399429 ATG2BQ96BY7 2078 aa8.21□□□□□ -1.09
COL28A1-201ENST00000399429 UHRF2Q96PU4 802 aa8.21□□□□□ -1.09
COL28A1-201ENST00000399429 GINS3Q9BRX5 216 aa8.21□□□□□ -1.09
COL28A1-201ENST00000399429 LPAR5Q9H1C0 372 aa8.21□□□□□ -1.09
COL28A1-201ENST00000399429 CALHM2Q9HA72 323 aa8.21□□□□□ -1.09
COL28A1-201ENST00000399429 ICAM5Q9UMF0 924 aa8.21□□□□□ -1.09
COL28A1-201ENST00000399429 RPH3ALQ9UNE2 315 aa8.21□□□□□ -1.09
COL28A1-201ENST00000399429 CEP290O15078 2479 aa8.21□□□□□ -1.09
COL28A1-201ENST00000399429 MPDZO75970 2070 aa8.21□□□□□ -1.09
COL28A1-201ENST00000399429 SBF1O95248 1867 aa8.21□□□□□ -1.09
COL28A1-201ENST00000399429 C3orf85A0A1B0GTC6 90 aa8.21□□□□□ -1.1
COL28A1-201ENST00000399429 GRIFINA4D1Z8 144 aa8.21□□□□□ -1.1
COL28A1-201ENST00000399429 B4E171 279 aa8.21□□□□□ -1.1
COL28A1-201ENST00000399429 GZMBP10144 247 aa8.21□□□□□ -1.1
COL28A1-201ENST00000399429 MSR1P21757 451 aa8.21□□□□□ -1.1
COL28A1-201ENST00000399429 FASLGP48023 281 aa8.21□□□□□ -1.1
COL28A1-201ENST00000399429 FAM78AQ5JUQ0 283 aa8.21□□□□□ -1.1
COL28A1-201ENST00000399429 C10orf91Q5T1B1 145 aa8.21□□□□□ -1.1
COL28A1-201ENST00000399429 FAM69BQ5VUD6 431 aa8.21□□□□□ -1.1
COL28A1-201ENST00000399429 SLC39A11Q8N1S5 342 aa8.21□□□□□ -1.1
COL28A1-201ENST00000399429 TMEM156Q8N614 296 aa8.21□□□□□ -1.1
COL28A1-201ENST00000399429 RSG1Q9BU20 258 aa8.21□□□□□ -1.1
COL28A1-201ENST00000399429 PECRQ9BY49 303 aa8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms