RNA–Protein interactions for RNA: ENST00000394536.4

PCDH1-203, Transcript of protocadherin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PCDH1, Length 3,827 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-203ENST00000394536 EFNA2O43921 213 aa14.11□□□□□ -0.15
PCDH1-203ENST00000394536 SULT1A2P50226 295 aa14.11□□□□□ -0.15
PCDH1-203ENST00000394536 CFHR1Q03591 330 aa14.11□□□□□ -0.15
PCDH1-203ENST00000394536 HIST2H3PS2Q5TEC6 136 aa14.11□□□□□ -0.15
PCDH1-203ENST00000394536 OR2C3Q8N628 320 aa14.11□□□□□ -0.15
PCDH1-203ENST00000394536 ADAMTS17Q8TE56 1095 aa14.11□□□□□ -0.15
PCDH1-203ENST00000394536 EXTL1Q92935 676 aa14.11□□□□□ -0.15
PCDH1-203ENST00000394536 SPSB1Q96BD6 273 aa14.11□□□□□ -0.15
PCDH1-203ENST00000394536 FOXB1Q99853 325 aa14.11□□□□□ -0.15
PCDH1-203ENST00000394536 SUCNR1Q9BXA5 334 aa14.11□□□□□ -0.15
PCDH1-203ENST00000394536 CHST5Q9GZS9 411 aa14.11□□□□□ -0.15
PCDH1-203ENST00000394536 UCK1Q9HA47 277 aa14.11□□□□□ -0.15
PCDH1-203ENST00000394536 OR14J1Q9UGF5 321 aa14.11□□□□□ -0.15
PCDH1-203ENST00000394536 KIAA2026Q5HYC2 2103 aa14.11□□□□□ -0.15
PCDH1-203ENST00000394536 PCNX3Q9H6A9 2034 aa14.11□□□□□ -0.15
PCDH1-203ENST00000394536 WDR1O75083 606 aa14.11□□□□□ -0.15
PCDH1-203ENST00000394536 MBPP02686 304 aaPredicted RBP14.11□□□□□ -0.15
PCDH1-203ENST00000394536 IAPPP10997 89 aa14.11□□□□□ -0.15
PCDH1-203ENST00000394536 FUT3P21217 361 aa14.11□□□□□ -0.15
PCDH1-203ENST00000394536 AADACP22760 399 aa14.11□□□□□ -0.15
PCDH1-203ENST00000394536 SLC25A47Q6Q0C1 308 aa14.11□□□□□ -0.15
PCDH1-203ENST00000394536 SLC39A7Q92504 469 aa14.11□□□□□ -0.15
PCDH1-203ENST00000394536 R4GN57 208 aa14.11□□□□□ -0.15
PCDH1-203ENST00000394536 ADAM20O43506 726 aa14.1□□□□□ -0.15
PCDH1-203ENST00000394536 GPM6AP51674 278 aa14.1□□□□□ -0.15
PCDH1-203ENST00000394536 SKA3Q8IX90 412 aa14.1□□□□□ -0.15
PCDH1-203ENST00000394536 ZNF611Q8N823 705 aa14.1□□□□□ -0.15
PCDH1-203ENST00000394536 SH3BGRL3Q9H299 93 aa14.1□□□□□ -0.15
PCDH1-203ENST00000394536 ESRP2Q9H6T0 727 aaKnown RBP14.1□□□□□ -0.15
PCDH1-203ENST00000394536 WNT16Q9UBV4 365 aa14.1□□□□□ -0.15
PCDH1-203ENST00000394536 IGKV1D-8A0A087WSZ0 117 aa14.1□□□□□ -0.15
PCDH1-203ENST00000394536 A0A1W2PR77 199 aa14.1□□□□□ -0.15
PCDH1-203ENST00000394536 LTBRP36941 435 aa14.1□□□□□ -0.15
PCDH1-203ENST00000394536 IDH3GP51553 393 aaPredicted RBP14.1□□□□□ -0.15
PCDH1-203ENST00000394536 HFEQ30201 348 aa14.1□□□□□ -0.15
PCDH1-203ENST00000394536 OR8G2PQ6IF36 304 aa14.1□□□□□ -0.15
PCDH1-203ENST00000394536 POC1AQ8NBT0 407 aa14.1□□□□□ -0.15
PCDH1-203ENST00000394536 CADM4Q8NFZ8 388 aa14.1□□□□□ -0.15
PCDH1-203ENST00000394536 ZNF837Q96EG3 531 aaPredicted RBP14.1□□□□□ -0.15
PCDH1-203ENST00000394536 B3GAT1Q9P2W7 334 aa14.1□□□□□ -0.15
PCDH1-203ENST00000394536 ZMAT5Q9UDW3 170 aaKnown RBP14.1□□□□□ -0.15
PCDH1-203ENST00000394536 CCDC187A0A096LP49 1063 aa14.1□□□□□ -0.15
PCDH1-203ENST00000394536 S100A8P05109 93 aa14.1□□□□□ -0.15
PCDH1-203ENST00000394536 RAB5CP51148 216 aa14.1□□□□□ -0.15
PCDH1-203ENST00000394536 LSM6P62312 80 aaKnown RBP14.1□□□□□ -0.15
PCDH1-203ENST00000394536 OR2B11Q5JQS5 317 aa14.1□□□□□ -0.15
PCDH1-203ENST00000394536 RBMS3Q6XE24 437 aaKnown RBP14.1□□□□□ -0.15
PCDH1-203ENST00000394536 LINC00696Q6ZRV3 163 aa14.1□□□□□ -0.15
PCDH1-203ENST00000394536 LHFPL2Q6ZUX7 228 aa14.1□□□□□ -0.15
PCDH1-203ENST00000394536 PLK3Q9H4B4 646 aa14.1□□□□□ -0.15
PCDH1-203ENST00000394536 NKX2-6A6NCS4 301 aa14.09□□□□□ -0.15
PCDH1-203ENST00000394536 FAM166BA8MTA8 275 aa14.09□□□□□ -0.15
PCDH1-203ENST00000394536 SULT1A1P50225 295 aa14.09□□□□□ -0.15
PCDH1-203ENST00000394536 TLE4Q04727 773 aa14.09□□□□□ -0.15
PCDH1-203ENST00000394536 FAM131CQ96AQ9 280 aa14.09□□□□□ -0.15
PCDH1-203ENST00000394536 RBMXL1Q96E39 390 aaKnown RBP14.09□□□□□ -0.15
PCDH1-203ENST00000394536 PPP1R3CQ9UQK1 317 aa14.09□□□□□ -0.15
PCDH1-203ENST00000394536 LOC390937A0A1W2PQ73 354 aa14.09□□□□□ -0.15
PCDH1-203ENST00000394536 IGHMP01871 453 aa14.09□□□□□ -0.15
PCDH1-203ENST00000394536 CCL4P13236 92 aa14.09□□□□□ -0.15
PCDH1-203ENST00000394536 FKBP2P26885 142 aaKnown RBP14.09□□□□□ -0.15
PCDH1-203ENST00000394536 CLDN15P56746 228 aa14.09□□□□□ -0.15
PCDH1-203ENST00000394536 ZNF239Q16600 458 aaKnown RBP14.09□□□□□ -0.15
PCDH1-203ENST00000394536 IGSF11Q5DX21 431 aa14.09□□□□□ -0.15
PCDH1-203ENST00000394536 ZNF709Q8N972 641 aa14.09□□□□□ -0.15
PCDH1-203ENST00000394536 OR6S1Q8NH40 331 aa14.09□□□□□ -0.15
PCDH1-203ENST00000394536 PARP11Q9NR21 331 aa14.09□□□□□ -0.15
PCDH1-203ENST00000394536 PISDQ9UG56 409 aa14.09□□□□□ -0.15
PCDH1-203ENST00000394536 TRAPPC2LQ9UL33 140 aa14.09□□□□□ -0.15
PCDH1-203ENST00000394536 LIPGQ9Y5X9 500 aa14.09□□□□□ -0.15
PCDH1-203ENST00000394536 ZNF407Q9C0G0 2248 aa14.09□□□□□ -0.15
PCDH1-203ENST00000394536 SMCO3A2RU48 225 aa14.09□□□□□ -0.15
PCDH1-203ENST00000394536 ANKRD30BLA7E2S9 258 aa14.09□□□□□ -0.15
PCDH1-203ENST00000394536 CEBPZOSA8MTT3 80 aa14.09□□□□□ -0.15
PCDH1-203ENST00000394536 NOVA1P51513 510 aaKnown RBP14.09□□□□□ -0.15
PCDH1-203ENST00000394536 DSCR4P56555 118 aaPredicted RBP14.09□□□□□ -0.15
PCDH1-203ENST00000394536 SURF2Q15527 256 aaPredicted RBP14.09□□□□□ -0.15
PCDH1-203ENST00000394536 ABHD17BQ5VST6 288 aa14.09□□□□□ -0.15
PCDH1-203ENST00000394536 LIAT1Q6ZQX7 453 aa14.09□□□□□ -0.15
PCDH1-203ENST00000394536 WDFY1Q8IWB7 410 aa14.09□□□□□ -0.15
PCDH1-203ENST00000394536 TRAV39A0A0B4J263 110 aa14.08□□□□□ -0.15
PCDH1-203ENST00000394536 A0A0J9YW62 118 aa14.08□□□□□ -0.15
PCDH1-203ENST00000394536 C3orf85A0A1B0GTC6 90 aa14.08□□□□□ -0.15
PCDH1-203ENST00000394536 HMGB3O15347 200 aaKnown RBP14.08□□□□□ -0.15
PCDH1-203ENST00000394536 CYB5BO43169 146 aa14.08□□□□□ -0.15
PCDH1-203ENST00000394536 EIF3GO75821 320 aaKnown RBP eCLIP14.08□□□□□ -0.15
PCDH1-203ENST00000394536 CBR3O75828 277 aa14.08□□□□□ -0.15
PCDH1-203ENST00000394536 TUSC2O75896 110 aa14.08□□□□□ -0.15
PCDH1-203ENST00000394536 ADCYAP1P18509 176 aa14.08□□□□□ -0.15
PCDH1-203ENST00000394536 RPS16P62249 146 aaKnown RBP14.08□□□□□ -0.15
PCDH1-203ENST00000394536 SLC35G3Q8N808 338 aa14.08□□□□□ -0.15
PCDH1-203ENST00000394536 LFNGQ8NES3 379 aa14.08□□□□□ -0.15
PCDH1-203ENST00000394536 OR56B2PQ8NGI1 322 aa14.08□□□□□ -0.15
PCDH1-203ENST00000394536 OR52M1Q8NGK5 317 aa14.08□□□□□ -0.15
PCDH1-203ENST00000394536 IFI44Q8TCB0 444 aa14.08□□□□□ -0.15
PCDH1-203ENST00000394536 ABI3Q9P2A4 366 aa14.08□□□□□ -0.15
PCDH1-203ENST00000394536 MIOXQ9UGB7 285 aa14.08□□□□□ -0.15
PCDH1-203ENST00000394536 STRAPQ9Y3F4 350 aaKnown RBP14.08□□□□□ -0.15
PCDH1-203ENST00000394536 ZNF727A8MUV8 499 aa14.08□□□□□ -0.16
PCDH1-203ENST00000394536 PDCD6O75340 191 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms