RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 NIT2Q9NQR4 276 aa10.54□□□□□ -0.72
CLIP3-201ENST00000360535 PISDQ9UG56 409 aa10.54□□□□□ -0.72
CLIP3-201ENST00000360535 NSG2Q9Y328 171 aa10.54□□□□□ -0.72
CLIP3-201ENST00000360535 A0A0G2JMM0 328 aa10.54□□□□□ -0.72
CLIP3-201ENST00000360535 A0A0U1RQV5 110 aa10.54□□□□□ -0.72
CLIP3-201ENST00000360535 A0A1W2PPB8 328 aa10.54□□□□□ -0.72
CLIP3-201ENST00000360535 A0A1W2PRS3 328 aa10.54□□□□□ -0.72
CLIP3-201ENST00000360535 FOXI3A8MTJ6 420 aaPredicted RBP10.54□□□□□ -0.72
CLIP3-201ENST00000360535 KIR3DP1A8MWS1 328 aa10.54□□□□□ -0.72
CLIP3-201ENST00000360535 CXCL13O43927 109 aa10.54□□□□□ -0.72
CLIP3-201ENST00000360535 CST7O76096 145 aa10.54□□□□□ -0.72
CLIP3-201ENST00000360535 APOC1P02654 83 aa10.54□□□□□ -0.72
CLIP3-201ENST00000360535 CD63P08962 238 aa10.54□□□□□ -0.72
CLIP3-201ENST00000360535 RGS19P49795 217 aa10.54□□□□□ -0.72
CLIP3-201ENST00000360535 ZNF133P52736 654 aaPredicted RBP10.54□□□□□ -0.72
CLIP3-201ENST00000360535 POLR2GP62487 172 aaKnown RBP eCLIP10.54□□□□□ -0.72
CLIP3-201ENST00000360535 SRYQ05066 204 aa10.54□□□□□ -0.72
CLIP3-201ENST00000360535 FABP9Q0Z7S8 132 aa10.54□□□□□ -0.72
CLIP3-201ENST00000360535 OR51B6Q9H340 312 aa10.54□□□□□ -0.72
CLIP3-201ENST00000360535 KCNJ16Q9NPI9 418 aa10.54□□□□□ -0.72
CLIP3-201ENST00000360535 C19orf12Q9NSK7 152 aa10.54□□□□□ -0.72
CLIP3-201ENST00000360535 LUZP4Q9P127 313 aa10.54□□□□□ -0.72
CLIP3-201ENST00000360535 URGCP-MRPS24S4R325 110 aa10.54□□□□□ -0.72
CLIP3-201ENST00000360535 ZIC3O60481 467 aa10.53□□□□□ -0.72
CLIP3-201ENST00000360535 AADACP22760 399 aa10.53□□□□□ -0.72
CLIP3-201ENST00000360535 NPBWR2P48146 333 aa10.53□□□□□ -0.72
CLIP3-201ENST00000360535 RPS18P62269 152 aaKnown RBP10.53□□□□□ -0.72
CLIP3-201ENST00000360535 TMEM187Q14656 261 aa10.53□□□□□ -0.72
CLIP3-201ENST00000360535 SLC25A26Q70HW3 274 aa10.53□□□□□ -0.72
CLIP3-201ENST00000360535 CARFQ8N187 725 aa10.53□□□□□ -0.72
CLIP3-201ENST00000360535 SLC35G3Q8N808 338 aa10.53□□□□□ -0.72
CLIP3-201ENST00000360535 RHBDD1Q8TEB9 315 aa10.53□□□□□ -0.72
CLIP3-201ENST00000360535 PAPOLGQ9BWT3 736 aaKnown RBP10.53□□□□□ -0.72
CLIP3-201ENST00000360535 TM2D1Q9BX74 207 aa10.53□□□□□ -0.72
CLIP3-201ENST00000360535 MRPS17Q9Y2R5 130 aaKnown RBP10.53□□□□□ -0.72
CLIP3-201ENST00000360535 UBE2J1Q9Y385 318 aaPredicted RBP10.53□□□□□ -0.72
CLIP3-201ENST00000360535 NCOR1O75376 2440 aa10.53□□□□□ -0.72
CLIP3-201ENST00000360535 ST8SIA3O43173 380 aa10.53□□□□□ -0.72
CLIP3-201ENST00000360535 KLK3P07288 261 aaPredicted RBP10.53□□□□□ -0.72
CLIP3-201ENST00000360535 GLP1RP43220 463 aa10.53□□□□□ -0.72
CLIP3-201ENST00000360535 ZNF92Q03936 586 aa10.53□□□□□ -0.72
CLIP3-201ENST00000360535 SURF2Q15527 256 aaPredicted RBP10.53□□□□□ -0.72
CLIP3-201ENST00000360535 KCNMB1Q16558 191 aa10.53□□□□□ -0.72
CLIP3-201ENST00000360535 HAGHQ16775 308 aa10.53□□□□□ -0.72
CLIP3-201ENST00000360535 OSR2Q8N2R0 312 aa10.53□□□□□ -0.72
CLIP3-201ENST00000360535 GPR137CQ8N3F9 429 aa10.53□□□□□ -0.72
CLIP3-201ENST00000360535 TP53RKQ96S44 253 aa10.53□□□□□ -0.72
CLIP3-201ENST00000360535 KPTNQ9Y664 436 aa10.53□□□□□ -0.72
CLIP3-201ENST00000360535 R4GN57 208 aa10.53□□□□□ -0.72
CLIP3-201ENST00000360535 ARHGAP21Q5T5U3 1957 aa10.53□□□□□ -0.72
CLIP3-201ENST00000360535 A0A096LPE4 126 aa10.52□□□□□ -0.72
CLIP3-201ENST00000360535 A0A1W2PPZ6 126 aa10.52□□□□□ -0.72
CLIP3-201ENST00000360535 NKX2-6A6NCS4 301 aa10.52□□□□□ -0.72
CLIP3-201ENST00000360535 SSSCA1O60232 199 aa10.52□□□□□ -0.72
CLIP3-201ENST00000360535 NR2C1P13056 603 aa10.52□□□□□ -0.72
CLIP3-201ENST00000360535 SNCAP37840 140 aa10.52□□□□□ -0.72
CLIP3-201ENST00000360535 HNF4GQ14541 408 aa10.52□□□□□ -0.72
CLIP3-201ENST00000360535 GNMTQ14749 295 aa10.52□□□□□ -0.72
CLIP3-201ENST00000360535 CEACAM16Q2WEN9 425 aa10.52□□□□□ -0.72
CLIP3-201ENST00000360535 AAED1Q7RTV5 226 aa10.52□□□□□ -0.72
CLIP3-201ENST00000360535 SLC16A14Q7RTX9 510 aa10.52□□□□□ -0.72
CLIP3-201ENST00000360535 FADS6Q8N9I5 356 aa10.52□□□□□ -0.72
CLIP3-201ENST00000360535 ZNF565Q8N9K5 539 aa10.52□□□□□ -0.72
CLIP3-201ENST00000360535 ZIC4Q8N9L1 334 aa10.52□□□□□ -0.72
CLIP3-201ENST00000360535 ADPRHL1Q8NDY3 354 aa10.52□□□□□ -0.72
CLIP3-201ENST00000360535 OR1F12Q8NHA8 337 aa10.52□□□□□ -0.72
CLIP3-201ENST00000360535 NSG1A0A0A6YYJ2 146 aa10.52□□□□□ -0.73
CLIP3-201ENST00000360535 H3BP45 60 aa10.52□□□□□ -0.73
CLIP3-201ENST00000360535 FBP1P09467 338 aa10.52□□□□□ -0.73
CLIP3-201ENST00000360535 EPHA1P21709 976 aa10.52□□□□□ -0.73
CLIP3-201ENST00000360535 SSR4P51571 173 aa10.52□□□□□ -0.73
CLIP3-201ENST00000360535 MALLQ13021 153 aa10.52□□□□□ -0.73
CLIP3-201ENST00000360535 ARL6IP1Q15041 203 aa10.52□□□□□ -0.73
CLIP3-201ENST00000360535 PCOLCEQ15113 449 aa10.52□□□□□ -0.73
CLIP3-201ENST00000360535 NSUN5P2Q63ZY6 315 aa10.52□□□□□ -0.73
CLIP3-201ENST00000360535 SLC23A3Q6PIS1 610 aa10.52□□□□□ -0.73
CLIP3-201ENST00000360535 RPS19BP1Q86WX3 136 aaKnown RBP10.52□□□□□ -0.73
CLIP3-201ENST00000360535 PLEKHA2Q9HB19 425 aa10.52□□□□□ -0.73
CLIP3-201ENST00000360535 ZNF286AQ9HBT8 521 aa10.52□□□□□ -0.73
CLIP3-201ENST00000360535 MMP24Q9Y5R2 645 aa10.52□□□□□ -0.73
CLIP3-201ENST00000360535 KLF2Q9Y5W3 355 aaPredicted RBP10.52□□□□□ -0.73
CLIP3-201ENST00000360535 TRBV23-1A0A0A0MS06 115 aa10.52□□□□□ -0.73
CLIP3-201ENST00000360535 ZNF727A8MUV8 499 aa10.52□□□□□ -0.73
CLIP3-201ENST00000360535 ETV2O00321 342 aaPredicted RBP10.52□□□□□ -0.73
CLIP3-201ENST00000360535 HSD17B6O14756 317 aa10.52□□□□□ -0.73
CLIP3-201ENST00000360535 EIF1BO60739 113 aaKnown RBP10.52□□□□□ -0.73
CLIP3-201ENST00000360535 LIFP15018 202 aa10.52□□□□□ -0.73
CLIP3-201ENST00000360535 GNRHRP30968 328 aa10.52□□□□□ -0.73
CLIP3-201ENST00000360535 OTX2P32243 289 aa10.52□□□□□ -0.73
CLIP3-201ENST00000360535 CARD18P57730 90 aa10.52□□□□□ -0.73
CLIP3-201ENST00000360535 H3F3AP84243 136 aa10.52□□□□□ -0.73
CLIP3-201ENST00000360535 CNN3Q15417 329 aaKnown RBP10.52□□□□□ -0.73
CLIP3-201ENST00000360535 NCMAPQ5T1S8 102 aa10.52□□□□□ -0.73
CLIP3-201ENST00000360535 CALHM1Q8IU99 346 aa10.52□□□□□ -0.73
CLIP3-201ENST00000360535 TMEM123Q8N131 208 aa10.52□□□□□ -0.73
CLIP3-201ENST00000360535 OR2G3Q8NGZ4 309 aa10.52□□□□□ -0.73
CLIP3-201ENST00000360535 SEMA5BQ9P283 1151 aa10.52□□□□□ -0.73
CLIP3-201ENST00000360535 TUBD1Q9UJT1 453 aa10.52□□□□□ -0.73
CLIP3-201ENST00000360535 ZDHHC8Q9ULC8 765 aa10.52□□□□□ -0.73
CLIP3-201ENST00000360535 SLC7A11Q9UPY5 501 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms