RNA–Protein interactions for RNA: ENST00000353479.9

COL17A1-201, Transcript of collagen type XVII alpha 1 chain, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene COL17A1, Length 5,734 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL17A1-201ENST00000353479 RAB7AP51149 207 aa13.06□□□□□ -0.32
COL17A1-201ENST00000353479 COL19A1Q14993 1142 aa13.06□□□□□ -0.32
COL17A1-201ENST00000353479 RTP5Q14D33 572 aa13.06□□□□□ -0.32
COL17A1-201ENST00000353479 CEBPEQ15744 281 aa13.06□□□□□ -0.32
COL17A1-201ENST00000353479 TPPP3Q9BW30 176 aa13.06□□□□□ -0.32
COL17A1-201ENST00000353479 IRF3Q14653 427 aa13.05□□□□□ -0.32
COL17A1-201ENST00000353479 IGFBP7Q16270 282 aa13.05□□□□□ -0.32
COL17A1-201ENST00000353479 FAM74A1Q5RGS3 127 aa13.05□□□□□ -0.32
COL17A1-201ENST00000353479 PRR19A6NJB7 356 aa13.05□□□□□ -0.32
COL17A1-201ENST00000353479 K7EQM0 130 aa13.05□□□□□ -0.32
COL17A1-201ENST00000353479 CYTIPO60759 359 aa13.05□□□□□ -0.32
COL17A1-201ENST00000353479 HOXD4P09016 255 aaPredicted RBP13.05□□□□□ -0.32
COL17A1-201ENST00000353479 OR13C7P0DN81 318 aa13.05□□□□□ -0.32
COL17A1-201ENST00000353479 C19orf48Q6RUI8 117 aa13.05□□□□□ -0.32
COL17A1-201ENST00000353479 FDCSPQ8NFU4 85 aa13.05□□□□□ -0.32
COL17A1-201ENST00000353479 ADGRG7Q96K78 797 aa13.05□□□□□ -0.32
COL17A1-201ENST00000353479 DCTN6O00399 190 aa13.05□□□□□ -0.32
COL17A1-201ENST00000353479 GGTLC2Q14390 218 aa13.05□□□□□ -0.32
COL17A1-201ENST00000353479 MS4A5Q9H3V2 200 aa13.05□□□□□ -0.32
COL17A1-201ENST00000353479 ZNF646O15015 1829 aaPredicted RBP13.05□□□□□ -0.32
COL17A1-201ENST00000353479 CKAP5Q14008 2032 aa13.05□□□□□ -0.32
COL17A1-201ENST00000353479 J3QT63 122 aa13.05□□□□□ -0.32
COL17A1-201ENST00000353479 CEACAM1P13688 526 aa13.05□□□□□ -0.32
COL17A1-201ENST00000353479 HIST2H3PS2Q5TEC6 136 aa13.05□□□□□ -0.32
COL17A1-201ENST00000353479 BTNL3Q6UXE8 466 aa13.05□□□□□ -0.32
COL17A1-201ENST00000353479 MARC2Q969Z3 335 aa13.05□□□□□ -0.32
COL17A1-201ENST00000353479 BIN3Q9NQY0 253 aa13.05□□□□□ -0.32
COL17A1-201ENST00000353479 GREB1Q4ZG55 1949 aa13.05□□□□□ -0.32
COL17A1-201ENST00000353479 PRRX1P54821 245 aa13.04□□□□□ -0.32
COL17A1-201ENST00000353479 PPP1R1AQ13522 171 aa13.04□□□□□ -0.32
COL17A1-201ENST00000353479 SKA3Q8IX90 412 aa13.04□□□□□ -0.32
COL17A1-201ENST00000353479 OR8B3Q8NGG8 313 aa13.04□□□□□ -0.32
COL17A1-201ENST00000353479 TMEM230Q96A57 120 aa13.04□□□□□ -0.32
COL17A1-201ENST00000353479 OR8B2Q96RD0 313 aa13.04□□□□□ -0.32
COL17A1-201ENST00000353479 CHST5Q9GZS9 411 aa13.04□□□□□ -0.32
COL17A1-201ENST00000353479 CRYM-AS1A6NIL9 109 aa13.04□□□□□ -0.32
COL17A1-201ENST00000353479 HRASP01112 189 aa13.04□□□□□ -0.32
COL17A1-201ENST00000353479 IL5P05113 134 aa13.04□□□□□ -0.32
COL17A1-201ENST00000353479 NPBWR1P48145 328 aa13.04□□□□□ -0.32
COL17A1-201ENST00000353479 NANOS3P60323 173 aaKnown RBP13.04□□□□□ -0.32
COL17A1-201ENST00000353479 ADIRFQ15847 76 aa13.04□□□□□ -0.32
COL17A1-201ENST00000353479 USF2Q15853 346 aaPredicted RBP13.04□□□□□ -0.32
COL17A1-201ENST00000353479 ACY3Q96HD9 319 aa13.04□□□□□ -0.32
COL17A1-201ENST00000353479 NIPSNAP3BQ9BS92 247 aa13.04□□□□□ -0.32
COL17A1-201ENST00000353479 RBM38Q9H0Z9 239 aaKnown RBP13.04□□□□□ -0.32
COL17A1-201ENST00000353479 MS4A18H0YCH9 400 aa13.04□□□□□ -0.32
COL17A1-201ENST00000353479 DLL1O00548 723 aa13.04□□□□□ -0.32
COL17A1-201ENST00000353479 MS4A18Q3C1V0 323 aa13.04□□□□□ -0.32
COL17A1-201ENST00000353479 TOR2AQ5JU69 321 aa13.04□□□□□ -0.32
COL17A1-201ENST00000353479 OR5A2Q8NGI9 324 aa13.04□□□□□ -0.32
COL17A1-201ENST00000353479 FAM122AQ96E09 287 aa13.04□□□□□ -0.32
COL17A1-201ENST00000353479 RPS10-NUDT3A0A1W2PQS6 291 aa13.04□□□□□ -0.32
COL17A1-201ENST00000353479 CST7O76096 145 aa13.04□□□□□ -0.32
COL17A1-201ENST00000353479 TTRP02766 147 aa13.04□□□□□ -0.32
COL17A1-201ENST00000353479 RPS10P46783 165 aaKnown RBP13.04□□□□□ -0.32
COL17A1-201ENST00000353479 SNTB1Q13884 538 aaKnown RBP13.04□□□□□ -0.32
COL17A1-201ENST00000353479 PIGYQ3MUY2 71 aa13.04□□□□□ -0.32
COL17A1-201ENST00000353479 APCDD1LQ8NCL9 501 aa13.04□□□□□ -0.32
COL17A1-201ENST00000353479 CACFD1Q9UGQ2 172 aa13.04□□□□□ -0.32
COL17A1-201ENST00000353479 SCN2AQ99250 2005 aa13.04□□□□□ -0.32
COL17A1-201ENST00000353479 IGHV3OR15-7A0A075B7D8 119 aa13.04□□□□□ -0.32
COL17A1-201ENST00000353479 C3orf85A0A1B0GTC6 90 aa13.04□□□□□ -0.32
COL17A1-201ENST00000353479 TXNDC12O95881 172 aa13.04□□□□□ -0.32
COL17A1-201ENST00000353479 ONECUT2O95948 504 aa13.04□□□□□ -0.32
COL17A1-201ENST00000353479 P2RY6Q15077 328 aa13.04□□□□□ -0.32
COL17A1-201ENST00000353479 MS4A3Q96HJ5 214 aa13.04□□□□□ -0.32
COL17A1-201ENST00000353479 ST6GALNAC2Q9UJ37 374 aa13.04□□□□□ -0.32
COL17A1-201ENST00000353479 ZNF724A8MTY0 619 aa13.03□□□□□ -0.32
COL17A1-201ENST00000353479 KIR3DL2P43630 455 aa13.03□□□□□ -0.32
COL17A1-201ENST00000353479 P2RX3P56373 397 aa13.03□□□□□ -0.32
COL17A1-201ENST00000353479 KCNK17Q96T54 332 aa13.03□□□□□ -0.32
COL17A1-201ENST00000353479 SRXN1Q9BYN0 137 aa13.03□□□□□ -0.32
COL17A1-201ENST00000353479 MRPS18AQ9NVS2 196 aaKnown RBP13.03□□□□□ -0.32
COL17A1-201ENST00000353479 STARD10Q9Y365 291 aa13.03□□□□□ -0.32
COL17A1-201ENST00000353479 CACNA1EQ15878 2313 aa13.03□□□□□ -0.32
COL17A1-201ENST00000353479 FAM186AA6NE01 2351 aa13.03□□□□□ -0.32
COL17A1-201ENST00000353479 HMGN3Q15651 99 aa13.03□□□□□ -0.32
COL17A1-201ENST00000353479 SMIM15Q7Z3B0 74 aa13.03□□□□□ -0.32
COL17A1-201ENST00000353479 HGDQ93099 445 aa13.03□□□□□ -0.32
COL17A1-201ENST00000353479 ACOT6Q3I5F7 207 aaPredicted RBP13.03□□□□□ -0.32
COL17A1-201ENST00000353479 TMEM91Q6ZNR0 172 aa13.03□□□□□ -0.32
COL17A1-201ENST00000353479 PFDN5Q99471 154 aa13.03□□□□□ -0.32
COL17A1-201ENST00000353479 MED9Q9NWA0 146 aa13.03□□□□□ -0.32
COL17A1-201ENST00000353479 GNG13Q9P2W3 67 aa13.03□□□□□ -0.32
COL17A1-201ENST00000353479 OR7C2O60412 319 aa13.03□□□□□ -0.32
COL17A1-201ENST00000353479 PDZK1IP1Q13113 114 aa13.03□□□□□ -0.32
COL17A1-201ENST00000353479 DHRS2Q13268 280 aa13.03□□□□□ -0.32
COL17A1-201ENST00000353479 WNT2BQ93097 391 aa13.03□□□□□ -0.32
COL17A1-201ENST00000353479 SFT2D2O95562 160 aa13.02□□□□□ -0.32
COL17A1-201ENST00000353479 SLC25A6P12236 298 aa13.02□□□□□ -0.32
COL17A1-201ENST00000353479 ASCL1P50553 236 aa13.02□□□□□ -0.32
COL17A1-201ENST00000353479 TAS2R45P59539 299 aa13.02□□□□□ -0.32
COL17A1-201ENST00000353479 BTN1A1Q13410 526 aa13.02□□□□□ -0.32
COL17A1-201ENST00000353479 LFNGQ8NES3 379 aa13.02□□□□□ -0.32
COL17A1-201ENST00000353479 MED30Q96HR3 178 aa13.02□□□□□ -0.32
COL17A1-201ENST00000353479 GPX7Q96SL4 187 aaPredicted RBP13.02□□□□□ -0.32
COL17A1-201ENST00000353479 RECKO95980 971 aa13.02□□□□□ -0.32
COL17A1-201ENST00000353479 HAGHQ16775 308 aa13.02□□□□□ -0.32
COL17A1-201ENST00000353479 FAM122CQ6P4D5 195 aa13.02□□□□□ -0.32
COL17A1-201ENST00000353479 ACTR3CQ9C0K3 210 aaPredicted RBP13.02□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms