RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 MALLQ13021 153 aa8.92□□□□□ -0.98
LIMA1-201ENST00000341247 AIMP2Q13155 320 aaKnown RBP8.92□□□□□ -0.98
LIMA1-201ENST00000341247 IGSF11Q5DX21 431 aa8.92□□□□□ -0.98
LIMA1-201ENST00000341247 OR2A2Q6IF42 318 aa8.92□□□□□ -0.98
LIMA1-201ENST00000341247 ATRAIDQ6UW56 229 aa8.92□□□□□ -0.98
LIMA1-201ENST00000341247 GPR87Q9BY21 358 aa8.92□□□□□ -0.98
LIMA1-201ENST00000341247 BET1O15155 118 aa8.92□□□□□ -0.98
LIMA1-201ENST00000341247 DIRAS3O95661 229 aa8.92□□□□□ -0.98
LIMA1-201ENST00000341247 OR5AC1P0C628 307 aa8.92□□□□□ -0.98
LIMA1-201ENST00000341247 ZNF728P0DKX0 622 aa8.92□□□□□ -0.98
LIMA1-201ENST00000341247 ARG2P78540 354 aa8.92□□□□□ -0.98
LIMA1-201ENST00000341247 CYCSP99999 105 aaKnown RBP8.92□□□□□ -0.98
LIMA1-201ENST00000341247 RBM39Q14498 530 aaKnown RBP8.92□□□□□ -0.98
LIMA1-201ENST00000341247 PAN3Q58A45 887 aaKnown RBP8.92□□□□□ -0.98
LIMA1-201ENST00000341247 MEX3BQ6ZN04 569 aaKnown RBP8.92□□□□□ -0.98
LIMA1-201ENST00000341247 GLRX5Q86SX6 157 aa8.92□□□□□ -0.98
LIMA1-201ENST00000341247 GCNT2Q8N0V5 402 aa8.92□□□□□ -0.98
LIMA1-201ENST00000341247 MRPS24Q96EL2 167 aaKnown RBP8.92□□□□□ -0.98
LIMA1-201ENST00000341247 PIK3IP1Q96FE7 263 aa8.92□□□□□ -0.98
LIMA1-201ENST00000341247 C2orf50Q96LR7 162 aa8.92□□□□□ -0.98
LIMA1-201ENST00000341247 FGF23Q9GZV9 251 aaPredicted RBP8.92□□□□□ -0.98
LIMA1-201ENST00000341247 PARP12Q9H0J9 701 aaKnown RBP8.92□□□□□ -0.98
LIMA1-201ENST00000341247 SLC25A32Q9H2D1 315 aa8.92□□□□□ -0.98
LIMA1-201ENST00000341247 TMEM231Q9H6L2 316 aa8.92□□□□□ -0.98
LIMA1-201ENST00000341247 PCDHB10Q9UN67 800 aa8.92□□□□□ -0.98
LIMA1-201ENST00000341247 CEP250Q9BV73 2442 aa8.92□□□□□ -0.98
LIMA1-201ENST00000341247 ZNF732B4DXR9 585 aa8.92□□□□□ -0.98
LIMA1-201ENST00000341247 XRCC2O43543 280 aa8.92□□□□□ -0.98
LIMA1-201ENST00000341247 SP1P08047 785 aa8.92□□□□□ -0.98
LIMA1-201ENST00000341247 FGF2P09038 288 aa8.92□□□□□ -0.98
LIMA1-201ENST00000341247 RCC1P18754 421 aaPredicted RBP8.92□□□□□ -0.98
LIMA1-201ENST00000341247 RNFT1Q5M7Z0 435 aa8.92□□□□□ -0.98
LIMA1-201ENST00000341247 Q6ZPA2 131 aa8.92□□□□□ -0.98
LIMA1-201ENST00000341247 ZNF552Q9H707 407 aaPredicted RBP8.92□□□□□ -0.98
LIMA1-201ENST00000341247 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP8.92□□□□□ -0.98
LIMA1-201ENST00000341247 NECAP2Q9NVZ3 263 aa8.92□□□□□ -0.98
LIMA1-201ENST00000341247 A8MXK9 166 aa8.91□□□□□ -0.98
LIMA1-201ENST00000341247 FBXO24O75426 580 aa8.91□□□□□ -0.98
LIMA1-201ENST00000341247 WISP2O76076 250 aa8.91□□□□□ -0.98
LIMA1-201ENST00000341247 OR8B8Q15620 311 aa8.91□□□□□ -0.98
LIMA1-201ENST00000341247 GGNBP1Q5YKI7 109 aa8.91□□□□□ -0.98
LIMA1-201ENST00000341247 TMEM42Q69YG0 159 aa8.91□□□□□ -0.98
LIMA1-201ENST00000341247 Q6ZSR3 168 aa8.91□□□□□ -0.98
LIMA1-201ENST00000341247 ADAMTS17Q8TE56 1095 aa8.91□□□□□ -0.98
LIMA1-201ENST00000341247 RTN4IP1Q8WWV3 396 aaPredicted RBP8.91□□□□□ -0.98
LIMA1-201ENST00000341247 MARVELD3Q96A59 401 aa8.91□□□□□ -0.98
LIMA1-201ENST00000341247 CPNE2Q96FN4 548 aaPredicted RBP8.91□□□□□ -0.98
LIMA1-201ENST00000341247 CEACAM18A8MTB9 384 aa8.91□□□□□ -0.98
LIMA1-201ENST00000341247 C21orf140B9A014 251 aa8.91□□□□□ -0.98
LIMA1-201ENST00000341247 RBM11P57052 281 aaKnown RBP8.91□□□□□ -0.98
LIMA1-201ENST00000341247 ARL6IP1Q15041 203 aa8.91□□□□□ -0.98
LIMA1-201ENST00000341247 TSC22D1Q15714 1073 aa8.91□□□□□ -0.98
LIMA1-201ENST00000341247 PLA2G2CQ5R387 149 aa8.91□□□□□ -0.98
LIMA1-201ENST00000341247 C17orf78Q8N4C9 275 aa8.91□□□□□ -0.98
LIMA1-201ENST00000341247 C1QTNF5Q9BXJ0 243 aa8.91□□□□□ -0.98
LIMA1-201ENST00000341247 ZFHX2Q9C0A1 2572 aaPredicted RBP8.91□□□□□ -0.98
LIMA1-201ENST00000341247 B8ZZF3 427 aa8.91□□□□□ -0.98
LIMA1-201ENST00000341247 SYNGR1O43759 233 aa8.91□□□□□ -0.98
LIMA1-201ENST00000341247 ATF4P18848 351 aaPredicted RBP8.91□□□□□ -0.98
LIMA1-201ENST00000341247 SLC10A1Q14973 349 aa8.91□□□□□ -0.98
LIMA1-201ENST00000341247 SPIN3Q5JUX0 258 aa8.91□□□□□ -0.98
LIMA1-201ENST00000341247 RPL7L1Q6DKI1 246 aaKnown RBP8.91□□□□□ -0.98
LIMA1-201ENST00000341247 HAGHLQ6PII5 290 aaPredicted RBP8.91□□□□□ -0.98
LIMA1-201ENST00000341247 LYZL2Q7Z4W2 148 aa8.91□□□□□ -0.98
LIMA1-201ENST00000341247 POC1AQ8NBT0 407 aa8.91□□□□□ -0.98
LIMA1-201ENST00000341247 BPIFCQ8NFQ6 507 aa8.91□□□□□ -0.98
LIMA1-201ENST00000341247 HPSE2Q8WWQ2 592 aa8.91□□□□□ -0.98
LIMA1-201ENST00000341247 TMEM9BQ9NQ34 198 aa8.91□□□□□ -0.98
LIMA1-201ENST00000341247 C1orf123Q9NWV4 160 aa8.91□□□□□ -0.98
LIMA1-201ENST00000341247 AGPAT2O15120 278 aa8.9□□□□□ -0.98
LIMA1-201ENST00000341247 PDCD6O75340 191 aa8.9□□□□□ -0.98
LIMA1-201ENST00000341247 OR2T2Q6IF00 324 aa8.9□□□□□ -0.98
LIMA1-201ENST00000341247 PRSS54Q6PEW0 395 aa8.9□□□□□ -0.98
LIMA1-201ENST00000341247 BAP18Q8IXM2 172 aa8.9□□□□□ -0.98
LIMA1-201ENST00000341247 RGCCQ9H4X1 137 aa8.9□□□□□ -0.98
LIMA1-201ENST00000341247 ZNF286AQ9HBT8 521 aa8.9□□□□□ -0.98
LIMA1-201ENST00000341247 MRPS18CQ9Y3D5 142 aaKnown RBP8.9□□□□□ -0.98
LIMA1-201ENST00000341247 TERTO14746 1132 aaKnown RBP8.9□□□□□ -0.98
LIMA1-201ENST00000341247 HS3ST1O14792 307 aa8.9□□□□□ -0.98
LIMA1-201ENST00000341247 TPT1P13693 172 aaKnown RBP8.9□□□□□ -0.98
LIMA1-201ENST00000341247 AADACP22760 399 aa8.9□□□□□ -0.98
LIMA1-201ENST00000341247 CCL11P51671 97 aa8.9□□□□□ -0.98
LIMA1-201ENST00000341247 KRTAP27-1Q3LI81 207 aa8.9□□□□□ -0.98
LIMA1-201ENST00000341247 UBALD1Q8TB05 177 aa8.9□□□□□ -0.98
LIMA1-201ENST00000341247 RDH5Q92781 318 aa8.9□□□□□ -0.98
LIMA1-201ENST00000341247 EXTL1Q92935 676 aa8.9□□□□□ -0.98
LIMA1-201ENST00000341247 TMEM45BQ96B21 275 aa8.9□□□□□ -0.98
LIMA1-201ENST00000341247 BARX1Q9HBU1 254 aaPredicted RBP8.9□□□□□ -0.98
LIMA1-201ENST00000341247 CYTL1Q9NRR1 136 aa8.9□□□□□ -0.98
LIMA1-201ENST00000341247 KIAA2026Q5HYC2 2103 aa8.9□□□□□ -0.98
LIMA1-201ENST00000341247 TRAV39A0A0B4J263 110 aa8.9□□□□□ -0.99
LIMA1-201ENST00000341247 SPAARA0A1B0GVQ0 90 aa8.9□□□□□ -0.99
LIMA1-201ENST00000341247 NKX2-8O15522 239 aa8.9□□□□□ -0.99
LIMA1-201ENST00000341247 PHF1O43189 567 aaPredicted RBP8.9□□□□□ -0.99
LIMA1-201ENST00000341247 NXPH3O95157 252 aa8.9□□□□□ -0.99
LIMA1-201ENST00000341247 IFNA21P01568 189 aa8.9□□□□□ -0.99
LIMA1-201ENST00000341247 CTSDP07339 412 aaPredicted RBP8.9□□□□□ -0.99
LIMA1-201ENST00000341247 HOXD4P09016 255 aaPredicted RBP8.9□□□□□ -0.99
LIMA1-201ENST00000341247 ASCL1P50553 236 aa8.9□□□□□ -0.99
LIMA1-201ENST00000341247 PLP2Q04941 152 aa8.9□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 93.7 ms