RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 A0A1W2PN81 502 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 MFSD2BA6NFX1 497 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 TNFSF11O14788 317 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 B4GALT1P15291 398 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 CHRNA7P36544 502 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 GUCA2AQ02747 115 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 ELOBQ15370 118 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 HYAL4Q2M3T9 481 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 C17orf78Q8N4C9 275 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 OR2T10Q8NGZ9 312 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 ZG16BQ96DA0 208 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 THOC3Q96J01 351 aaKnown RBP9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 OPN1LWP04000 364 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 CXCL3P19876 107 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 HOXA6P31267 233 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 C1QTNF12Q5T7M4 302 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 OR1L4Q8NGR5 311 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 MCHR2Q969V1 340 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 SLC22A20A6NK97 555 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 COX7A2P2O60397 106 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 CTLA4P16410 223 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 LRRC3BQ96PB8 259 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 PROCRQ9UNN8 238 aa9.14□□□□□ -0.95
CCDC88A-202ENST00000336838 MPTX1A8MV57 137 aa9.13□□□□□ -0.95
CCDC88A-202ENST00000336838 KRASP01116 189 aa9.13□□□□□ -0.95
CCDC88A-202ENST00000336838 SRD5A2P31213 254 aa9.13□□□□□ -0.95
CCDC88A-202ENST00000336838 ROM1Q03395 351 aa9.13□□□□□ -0.95
CCDC88A-202ENST00000336838 ZNF766Q5HY98 468 aa9.13□□□□□ -0.95
CCDC88A-202ENST00000336838 VSTM2AQ8TAG5 236 aa9.13□□□□□ -0.95
CCDC88A-202ENST00000336838 PNLIPP16233 465 aa9.13□□□□□ -0.95
CCDC88A-202ENST00000336838 NAT1P18440 290 aa9.13□□□□□ -0.95
CCDC88A-202ENST00000336838 RAB32Q13637 225 aa9.13□□□□□ -0.95
CCDC88A-202ENST00000336838 ASTLQ6HA08 431 aaPredicted RBP9.13□□□□□ -0.95
CCDC88A-202ENST00000336838 PECRQ9BY49 303 aa9.13□□□□□ -0.95
CCDC88A-202ENST00000336838 WDR54Q9H977 334 aa9.13□□□□□ -0.95
CCDC88A-202ENST00000336838 ST6GALNAC2Q9UJ37 374 aa9.13□□□□□ -0.95
CCDC88A-202ENST00000336838 THADAQ6YHU6 1953 aa9.13□□□□□ -0.95
CCDC88A-202ENST00000336838 SDK2Q58EX2 2172 aa9.13□□□□□ -0.95
CCDC88A-202ENST00000336838 H0Y8X5 98 aa9.13□□□□□ -0.95
CCDC88A-202ENST00000336838 ZIC2O95409 532 aaPredicted RBP9.13□□□□□ -0.95
CCDC88A-202ENST00000336838 OR5AC1P0C628 307 aa9.13□□□□□ -0.95
CCDC88A-202ENST00000336838 NQO2P16083 231 aa9.13□□□□□ -0.95
CCDC88A-202ENST00000336838 COL19A1Q14993 1142 aa9.13□□□□□ -0.95
CCDC88A-202ENST00000336838 AWAT1Q58HT5 328 aa9.13□□□□□ -0.95
CCDC88A-202ENST00000336838 FOXB1Q99853 325 aa9.13□□□□□ -0.95
CCDC88A-202ENST00000336838 ADAM20O43506 726 aa9.13□□□□□ -0.95
CCDC88A-202ENST00000336838 CNIH1O95406 144 aa9.13□□□□□ -0.95
CCDC88A-202ENST00000336838 ANKRD34CP0C6C1 535 aa9.13□□□□□ -0.95
CCDC88A-202ENST00000336838 FABP6P51161 128 aa9.13□□□□□ -0.95
CCDC88A-202ENST00000336838 LINC00052Q96N35 136 aa9.13□□□□□ -0.95
CCDC88A-202ENST00000336838 CRYAAP02489 173 aa9.13□□□□□ -0.95
CCDC88A-202ENST00000336838 FABP4P15090 132 aa9.13□□□□□ -0.95
CCDC88A-202ENST00000336838 KCNAB1Q14722 419 aa9.13□□□□□ -0.95
CCDC88A-202ENST00000336838 TMEM215Q68D42 235 aa9.13□□□□□ -0.95
CCDC88A-202ENST00000336838 GPR87Q9BY21 358 aa9.13□□□□□ -0.95
CCDC88A-202ENST00000336838 MPDU1O75352 247 aa9.13□□□□□ -0.95
CCDC88A-202ENST00000336838 SPCS3P61009 180 aa9.13□□□□□ -0.95
CCDC88A-202ENST00000336838 TEX30Q5JUR7 227 aa9.13□□□□□ -0.95
CCDC88A-202ENST00000336838 NFAM1Q8NET5 270 aaPredicted RBP9.13□□□□□ -0.95
CCDC88A-202ENST00000336838 OR8G5Q8NG78 346 aa9.13□□□□□ -0.95
CCDC88A-202ENST00000336838 AAMDCQ9H7C9 122 aa9.13□□□□□ -0.95
CCDC88A-202ENST00000336838 HSBP1O75506 76 aa9.13□□□□□ -0.95
CCDC88A-202ENST00000336838 CCR2P41597 374 aa9.13□□□□□ -0.95
CCDC88A-202ENST00000336838 ETFBKMTQ8IXQ9 262 aa9.13□□□□□ -0.95
CCDC88A-202ENST00000336838 CNOT1A5YKK6 2376 aaKnown RBP9.13□□□□□ -0.95
CCDC88A-202ENST00000336838 LHX8Q68G74 356 aa9.13□□□□□ -0.95
CCDC88A-202ENST00000336838 HOGA1Q86XE5 327 aa9.13□□□□□ -0.95
CCDC88A-202ENST00000336838 MYOZ1Q9NP98 299 aaPredicted RBP9.13□□□□□ -0.95
CCDC88A-202ENST00000336838 ITGBL1O95965 494 aaPredicted RBP9.12□□□□□ -0.95
CCDC88A-202ENST00000336838 SULT1A2P50226 295 aa9.12□□□□□ -0.95
CCDC88A-202ENST00000336838 FDX2Q6P4F2 183 aa9.12□□□□□ -0.95
CCDC88A-202ENST00000336838 HSD17B10Q99714 261 aaKnown RBP9.12□□□□□ -0.95
CCDC88A-202ENST00000336838 LANCL2Q9NS86 450 aa9.12□□□□□ -0.95
CCDC88A-202ENST00000336838 TRBV5-5A0A0J9YX44 114 aa9.12□□□□□ -0.95
CCDC88A-202ENST00000336838 LIPT2A6NK58 231 aa9.12□□□□□ -0.95
CCDC88A-202ENST00000336838 GRPP07492 148 aa9.12□□□□□ -0.95
CCDC88A-202ENST00000336838 ZP4Q12836 540 aa9.12□□□□□ -0.95
CCDC88A-202ENST00000336838 MS4A10Q96PG2 267 aa9.12□□□□□ -0.95
CCDC88A-202ENST00000336838 SEBOXQ9HB31 216 aaPredicted RBP9.12□□□□□ -0.95
CCDC88A-202ENST00000336838 OR6C3Q9NZP0 311 aa9.12□□□□□ -0.95
CCDC88A-202ENST00000336838 SCO1O75880 301 aa9.12□□□□□ -0.95
CCDC88A-202ENST00000336838 RPS4Y1P22090 263 aaKnown RBP9.12□□□□□ -0.95
CCDC88A-202ENST00000336838 SNRPEP62304 92 aaKnown RBP9.12□□□□□ -0.95
CCDC88A-202ENST00000336838 SLC26A10Q8NG04 563 aa9.12□□□□□ -0.95
CCDC88A-202ENST00000336838 OR4S2Q8NH73 311 aa9.12□□□□□ -0.95
CCDC88A-202ENST00000336838 CCDC74BQ96LY2 380 aa9.12□□□□□ -0.95
CCDC88A-202ENST00000336838 PARP12Q9H0J9 701 aaKnown RBP9.12□□□□□ -0.95
CCDC88A-202ENST00000336838 TMEM9BQ9NQ34 198 aa9.12□□□□□ -0.95
CCDC88A-202ENST00000336838 TCF20Q9UGU0 1960 aaKnown RBP9.12□□□□□ -0.95
CCDC88A-202ENST00000336838 PIAS2O75928 621 aa9.12□□□□□ -0.95
CCDC88A-202ENST00000336838 MVDP53602 400 aa9.12□□□□□ -0.95
CCDC88A-202ENST00000336838 TMEM91Q6ZNR0 172 aa9.12□□□□□ -0.95
CCDC88A-202ENST00000336838 ASB5Q8WWX0 329 aa9.12□□□□□ -0.95
CCDC88A-202ENST00000336838 GAL3ST2Q9H3Q3 398 aa9.12□□□□□ -0.95
CCDC88A-202ENST00000336838 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa9.12□□□□□ -0.95
CCDC88A-202ENST00000336838 PTP4A3O75365 173 aa9.12□□□□□ -0.95
CCDC88A-202ENST00000336838 LGALS4P56470 323 aa9.12□□□□□ -0.95
CCDC88A-202ENST00000336838 VMA21Q3ZAQ7 101 aa9.12□□□□□ -0.95
CCDC88A-202ENST00000336838 UBE3DQ7Z6J8 389 aa9.12□□□□□ -0.95
CCDC88A-202ENST00000336838 OR4A4PQ8NGN8 299 aa9.12□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms