RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 CNTD2Q9H8S5 307 aa13.05□□□□□ -0.32
CLN3-201ENST00000333496 ELL3Q9HB65 397 aaPredicted RBP13.05□□□□□ -0.32
CLN3-201ENST00000333496 EXOSC1Q9Y3B2 195 aaKnown RBP13.05□□□□□ -0.32
CLN3-201ENST00000333496 CDK5R1Q15078 307 aa13.04□□□□□ -0.32
CLN3-201ENST00000333496 RGS21Q2M5E4 152 aa13.04□□□□□ -0.32
CLN3-201ENST00000333496 C9orf139Q6ZV77 190 aa13.04□□□□□ -0.32
CLN3-201ENST00000333496 SLC25A26Q70HW3 274 aa13.04□□□□□ -0.32
CLN3-201ENST00000333496 ZDHHC22Q8N966 263 aa13.04□□□□□ -0.32
CLN3-201ENST00000333496 ZNF485Q8NCK3 441 aa13.04□□□□□ -0.32
CLN3-201ENST00000333496 HAVCR2Q8TDQ0 301 aa13.04□□□□□ -0.32
CLN3-201ENST00000333496 H1FXQ92522 213 aaKnown RBP13.04□□□□□ -0.32
CLN3-201ENST00000333496 SLAMF9Q96A28 289 aa13.04□□□□□ -0.32
CLN3-201ENST00000333496 COMMD4Q9H0A8 199 aa13.04□□□□□ -0.32
CLN3-201ENST00000333496 ERGIC3Q9Y282 383 aa13.04□□□□□ -0.32
CLN3-201ENST00000333496 PRDX2P32119 198 aa13.03□□□□□ -0.32
CLN3-201ENST00000333496 ATP1B3P54709 279 aa13.03□□□□□ -0.32
CLN3-201ENST00000333496 CCDC58Q4VC31 144 aa13.03□□□□□ -0.32
CLN3-201ENST00000333496 METTL11BQ5VVY1 283 aa13.03□□□□□ -0.32
CLN3-201ENST00000333496 RPL22L1Q6P5R6 122 aaKnown RBP13.03□□□□□ -0.32
CLN3-201ENST00000333496 BRD3OSQ6XYD6 125 aa13.03□□□□□ -0.32
CLN3-201ENST00000333496 TMPRSS11AQ6ZMR5 421 aa13.03□□□□□ -0.32
CLN3-201ENST00000333496 PARP16Q8N5Y8 322 aa13.03□□□□□ -0.32
CLN3-201ENST00000333496 SIGLECL1Q8N7X8 197 aa13.03□□□□□ -0.32
CLN3-201ENST00000333496 MINDY2Q8NBR6 621 aa13.03□□□□□ -0.32
CLN3-201ENST00000333496 TMEM185AQ8NFB2 350 aa13.03□□□□□ -0.32
CLN3-201ENST00000333496 OR13C9Q8NGT0 318 aa13.03□□□□□ -0.32
CLN3-201ENST00000333496 GATAD2BQ8WXI9 593 aa13.03□□□□□ -0.32
CLN3-201ENST00000333496 SPSB1Q96BD6 273 aa13.03□□□□□ -0.32
CLN3-201ENST00000333496 CEP19Q96LK0 163 aa13.03□□□□□ -0.32
CLN3-201ENST00000333496 DMRTB1Q96MA1 342 aa13.03□□□□□ -0.32
CLN3-201ENST00000333496 OPALINQ96PE5 141 aa13.03□□□□□ -0.32
CLN3-201ENST00000333496 SPACA5Q96QH8 159 aa13.03□□□□□ -0.32
CLN3-201ENST00000333496 MS4A7Q9GZW8 240 aaPredicted RBP13.03□□□□□ -0.32
CLN3-201ENST00000333496 AKIP1Q9NQ31 210 aa13.03□□□□□ -0.32
CLN3-201ENST00000333496 CENPVL3A0A0U1RRI6 287 aa13.02□□□□□ -0.32
CLN3-201ENST00000333496 OGG1O15527 345 aa13.02□□□□□ -0.32
CLN3-201ENST00000333496 OCM2P0CE71 109 aa13.02□□□□□ -0.32
CLN3-201ENST00000333496 OCMP0CE72 109 aaPredicted RBP13.02□□□□□ -0.32
CLN3-201ENST00000333496 NDUFB7P17568 137 aa13.02□□□□□ -0.32
CLN3-201ENST00000333496 MYL12AP19105 171 aa13.02□□□□□ -0.32
CLN3-201ENST00000333496 PRKACBP22694 351 aa13.02□□□□□ -0.32
CLN3-201ENST00000333496 NPBWR2P48146 333 aa13.02□□□□□ -0.32
CLN3-201ENST00000333496 MTCP1P56278 107 aa13.02□□□□□ -0.32
CLN3-201ENST00000333496 RNLSQ5VYX0 342 aa13.02□□□□□ -0.32
CLN3-201ENST00000333496 ASPHD2Q6ICH7 369 aa13.02□□□□□ -0.32
CLN3-201ENST00000333496 LHFPL2Q6ZUX7 228 aa13.02□□□□□ -0.32
CLN3-201ENST00000333496 Q8N7P7 452 aa13.02□□□□□ -0.32
CLN3-201ENST00000333496 OR52N1Q8NH53 320 aa13.02□□□□□ -0.32
CLN3-201ENST00000333496 DYNC2LI1Q8TCX1 351 aa13.02□□□□□ -0.32
CLN3-201ENST00000333496 RFT1Q96AA3 541 aa13.02□□□□□ -0.32
CLN3-201ENST00000333496 ZCCHC4Q9H5U6 513 aa13.02□□□□□ -0.32
CLN3-201ENST00000333496 RHBDL2Q9NX52 303 aa13.02□□□□□ -0.32
CLN3-201ENST00000333496 BABAM2Q9NXR7 383 aa13.02□□□□□ -0.32
CLN3-201ENST00000333496 OR14J1Q9UGF5 321 aa13.02□□□□□ -0.32
CLN3-201ENST00000333496 KPTNQ9Y664 436 aa13.02□□□□□ -0.32
CLN3-201ENST00000333496 SPRY1O43609 319 aaPredicted RBP13.02□□□□□ -0.33
CLN3-201ENST00000333496 KNG1P01042 644 aa13.02□□□□□ -0.33
CLN3-201ENST00000333496 DOC2BQ14184 412 aa13.02□□□□□ -0.33
CLN3-201ENST00000333496 GPR157Q5UAW9 335 aa13.02□□□□□ -0.33
CLN3-201ENST00000333496 RUSC1-AS1Q66K80 236 aa13.02□□□□□ -0.33
CLN3-201ENST00000333496 SERPINA12Q8IW75 414 aa13.02□□□□□ -0.33
CLN3-201ENST00000333496 ZNF561Q8N587 486 aa13.02□□□□□ -0.33
CLN3-201ENST00000333496 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.02□□□□□ -0.33
CLN3-201ENST00000333496 C1orf147Q96MC9 270 aaPredicted RBP13.02□□□□□ -0.33
CLN3-201ENST00000333496 ONECUT1Q9UBC0 465 aa13.02□□□□□ -0.33
CLN3-201ENST00000333496 IL36RNQ9UBH0 155 aa13.02□□□□□ -0.33
CLN3-201ENST00000333496 DHDHQ9UQ10 334 aa13.02□□□□□ -0.33
CLN3-201ENST00000333496 IGKV1-12A0A0C4DH73 117 aa13.01□□□□□ -0.33
CLN3-201ENST00000333496 MDFIC2A0A1B0GVS7 189 aa13.01□□□□□ -0.33
CLN3-201ENST00000333496 MAGEB3O15480 346 aa13.01□□□□□ -0.33
CLN3-201ENST00000333496 ALX3O95076 343 aa13.01□□□□□ -0.33
CLN3-201ENST00000333496 IGKV1D-12P01611 117 aa13.01□□□□□ -0.33
CLN3-201ENST00000333496 TGFBR2P37173 567 aa13.01□□□□□ -0.33
CLN3-201ENST00000333496 POU3F4P49335 361 aa13.01□□□□□ -0.33
CLN3-201ENST00000333496 DLX1P56177 255 aa13.01□□□□□ -0.33
CLN3-201ENST00000333496 PDZK1IP1Q13113 114 aa13.01□□□□□ -0.33
CLN3-201ENST00000333496 ZNF367Q7RTV3 350 aa13.01□□□□□ -0.33
CLN3-201ENST00000333496 VMO1Q7Z5L0 202 aa13.01□□□□□ -0.33
CLN3-201ENST00000333496 MKXQ8IYA7 352 aa13.01□□□□□ -0.33
CLN3-201ENST00000333496 CENPSQ8N2Z9 138 aa13.01□□□□□ -0.33
CLN3-201ENST00000333496 TSEN15Q8WW01 171 aaKnown RBP13.01□□□□□ -0.33
CLN3-201ENST00000333496 LHX4Q969G2 390 aa13.01□□□□□ -0.33
CLN3-201ENST00000333496 RBFOX1Q9NWB1 397 aaKnown RBP13.01□□□□□ -0.33
CLN3-201ENST00000333496 J3QRK9 145 aa13□□□□□ -0.33
CLN3-201ENST00000333496 HNRNPCP07910 306 aaKnown RBP eCLIP13□□□□□ -0.33
CLN3-201ENST00000333496 CD36P16671 472 aa13□□□□□ -0.33
CLN3-201ENST00000333496 BCL3P20749 454 aa13□□□□□ -0.33
CLN3-201ENST00000333496 SOX2P48431 317 aa13□□□□□ -0.33
CLN3-201ENST00000333496 COL10A1Q03692 680 aa13□□□□□ -0.33
CLN3-201ENST00000333496 PDCD1Q15116 288 aa13□□□□□ -0.33
CLN3-201ENST00000333496 DMKNQ6E0U4 476 aaPredicted RBP13□□□□□ -0.33
CLN3-201ENST00000333496 ZNF529Q6P280 563 aa13□□□□□ -0.33
CLN3-201ENST00000333496 KIR3DL3Q8N743 410 aa13□□□□□ -0.33
CLN3-201ENST00000333496 OR5D14Q8NGL3 314 aa13□□□□□ -0.33
CLN3-201ENST00000333496 NDNFQ8TB73 568 aa13□□□□□ -0.33
CLN3-201ENST00000333496 SMIM19Q96E16 107 aa13□□□□□ -0.33
CLN3-201ENST00000333496 JMJD8Q96S16 334 aa13□□□□□ -0.33
CLN3-201ENST00000333496 MND1Q9BWT6 205 aa13□□□□□ -0.33
CLN3-201ENST00000333496 SIRT7Q9NRC8 400 aa13□□□□□ -0.33
CLN3-201ENST00000333496 C19orf12Q9NSK7 152 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms