RNA–Protein interactions for RNA: ENST00000332345.10

LIMS1-201, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMS1, Length 1,235 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-201ENST00000332345 GPR50Q13585 617 aa11.56□□□□□ -0.56
LIMS1-201ENST00000332345 BLMHQ13867 455 aa11.56□□□□□ -0.56
LIMS1-201ENST00000332345 IRF3Q14653 427 aa11.56□□□□□ -0.56
LIMS1-201ENST00000332345 ZNF146Q15072 292 aa11.56□□□□□ -0.56
LIMS1-201ENST00000332345 SPIN3Q5JUX0 258 aa11.56□□□□□ -0.56
LIMS1-201ENST00000332345 RBMS3Q6XE24 437 aaKnown RBP11.56□□□□□ -0.56
LIMS1-201ENST00000332345 PRSS48Q7RTY5 328 aa11.56□□□□□ -0.56
LIMS1-201ENST00000332345 MS4A15Q8N5U1 240 aa11.56□□□□□ -0.56
LIMS1-201ENST00000332345 KIR3DL3Q8N743 410 aa11.56□□□□□ -0.56
LIMS1-201ENST00000332345 ASCC1Q8N9N2 400 aaKnown RBP11.56□□□□□ -0.56
LIMS1-201ENST00000332345 OR5D18Q8NGL1 313 aa11.56□□□□□ -0.56
LIMS1-201ENST00000332345 OR13C5Q8NGS8 318 aa11.56□□□□□ -0.56
LIMS1-201ENST00000332345 C22orf15Q8WYQ4 148 aa11.56□□□□□ -0.56
LIMS1-201ENST00000332345 SGCDQ92629 289 aa11.56□□□□□ -0.56
LIMS1-201ENST00000332345 SNX22Q96L94 193 aa11.56□□□□□ -0.56
LIMS1-201ENST00000332345 JMJD8Q96S16 334 aa11.56□□□□□ -0.56
LIMS1-201ENST00000332345 SIRPDQ9H106 197 aa11.56□□□□□ -0.56
LIMS1-201ENST00000332345 HMG20AQ9NP66 347 aa11.56□□□□□ -0.56
LIMS1-201ENST00000332345 RBFOX1Q9NWB1 397 aaKnown RBP11.56□□□□□ -0.56
LIMS1-201ENST00000332345 ZNF69Q9UC07 566 aa11.56□□□□□ -0.56
LIMS1-201ENST00000332345 IGKV1-12A0A0C4DH73 117 aa11.55□□□□□ -0.56
LIMS1-201ENST00000332345 DENRO43583 198 aaKnown RBP11.55□□□□□ -0.56
LIMS1-201ENST00000332345 HAND1O96004 215 aa11.55□□□□□ -0.56
LIMS1-201ENST00000332345 IGKV1D-12P01611 117 aa11.55□□□□□ -0.56
LIMS1-201ENST00000332345 SFTPBP07988 381 aa11.55□□□□□ -0.56
LIMS1-201ENST00000332345 IGHV4-38-2P0DP08 117 aa11.55□□□□□ -0.56
LIMS1-201ENST00000332345 MAPK3P27361 379 aaPredicted RBP11.55□□□□□ -0.56
LIMS1-201ENST00000332345 ZP1P60852 638 aa11.55□□□□□ -0.56
LIMS1-201ENST00000332345 RPL31P62899 125 aaKnown RBP11.55□□□□□ -0.56
LIMS1-201ENST00000332345 RNF144BQ7Z419 303 aa11.55□□□□□ -0.56
LIMS1-201ENST00000332345 PXT1Q8NFP0 134 aa11.55□□□□□ -0.56
LIMS1-201ENST00000332345 OR52N4Q8NGI2 321 aa11.55□□□□□ -0.56
LIMS1-201ENST00000332345 OR51A2Q8NGJ7 313 aa11.55□□□□□ -0.56
LIMS1-201ENST00000332345 PPP1R35Q8TAP8 253 aa11.55□□□□□ -0.56
LIMS1-201ENST00000332345 OR14A2Q96R54 314 aa11.55□□□□□ -0.56
LIMS1-201ENST00000332345 OR5M11Q96RB7 305 aa11.55□□□□□ -0.56
LIMS1-201ENST00000332345 TBX15Q96SF7 602 aa11.55□□□□□ -0.56
LIMS1-201ENST00000332345 SLC6A7Q99884 636 aa11.55□□□□□ -0.56
LIMS1-201ENST00000332345 GSTK1Q9Y2Q3 226 aa11.55□□□□□ -0.56
LIMS1-201ENST00000332345 LSM2Q9Y333 95 aaKnown RBP11.55□□□□□ -0.56
LIMS1-201ENST00000332345 IGHV3OR16-10A0A075B7F0 116 aa11.54□□□□□ -0.56
LIMS1-201ENST00000332345 TRBV5-7A0A0A0MS05 114 aa11.54□□□□□ -0.56
LIMS1-201ENST00000332345 TRAV40A0A0B4J280 105 aa11.54□□□□□ -0.56
LIMS1-201ENST00000332345 M0R1W7 72 aa11.54□□□□□ -0.56
LIMS1-201ENST00000332345 CALCBP10092 127 aa11.54□□□□□ -0.56
LIMS1-201ENST00000332345 IGFBP3P17936 291 aaPredicted RBP11.54□□□□□ -0.56
LIMS1-201ENST00000332345 DUSP1P28562 367 aa11.54□□□□□ -0.56
LIMS1-201ENST00000332345 ZNF93P35789 620 aaPredicted RBP11.54□□□□□ -0.56
LIMS1-201ENST00000332345 PTGFRP43088 359 aa11.54□□□□□ -0.56
LIMS1-201ENST00000332345 DOC2BQ14184 412 aa11.54□□□□□ -0.56
LIMS1-201ENST00000332345 RSU1Q15404 277 aa11.54□□□□□ -0.56
LIMS1-201ENST00000332345 DDI2Q5TDH0 399 aa11.54□□□□□ -0.56
LIMS1-201ENST00000332345 ASPHD2Q6ICH7 369 aa11.54□□□□□ -0.56
LIMS1-201ENST00000332345 CRIP3Q6Q6R5 217 aa11.54□□□□□ -0.56
LIMS1-201ENST00000332345 C9orf139Q6ZV77 190 aa11.54□□□□□ -0.56
LIMS1-201ENST00000332345 GDPD3Q7L5L3 318 aa11.54□□□□□ -0.56
LIMS1-201ENST00000332345 VMO1Q7Z5L0 202 aa11.54□□□□□ -0.56
LIMS1-201ENST00000332345 FAM185AQ8N0U4 392 aa11.54□□□□□ -0.56
LIMS1-201ENST00000332345 TNFAIP8L1Q8WVP5 186 aa11.54□□□□□ -0.56
LIMS1-201ENST00000332345 UFD1Q92890 307 aa11.54□□□□□ -0.56
LIMS1-201ENST00000332345 LHX4Q969G2 390 aa11.54□□□□□ -0.56
LIMS1-201ENST00000332345 S100A13Q99584 98 aa11.54□□□□□ -0.56
LIMS1-201ENST00000332345 ELL3Q9HB65 397 aaPredicted RBP11.54□□□□□ -0.56
LIMS1-201ENST00000332345 ISYNA1Q9NPH2 558 aa11.54□□□□□ -0.56
LIMS1-201ENST00000332345 PCDHB16Q9NRJ7 776 aa11.54□□□□□ -0.56
LIMS1-201ENST00000332345 FOXJ3Q9UPW0 622 aa11.54□□□□□ -0.56
LIMS1-201ENST00000332345 CENPVL3A0A0U1RRI6 287 aa11.53□□□□□ -0.56
LIMS1-201ENST00000332345 hCG_1809904A0A1W2PP81 198 aa11.53□□□□□ -0.56
LIMS1-201ENST00000332345 A0A1W2PPE2 198 aa11.53□□□□□ -0.56
LIMS1-201ENST00000332345 A0A1W2PPK0 400 aa11.53□□□□□ -0.56
LIMS1-201ENST00000332345 A0A1W2PR64 198 aa11.53□□□□□ -0.56
LIMS1-201ENST00000332345 A0A1W2PRV1 198 aa11.53□□□□□ -0.56
LIMS1-201ENST00000332345 RNF212BA8MTL3 300 aa11.53□□□□□ -0.56
LIMS1-201ENST00000332345 ZNF737O75373 536 aa11.53□□□□□ -0.56
LIMS1-201ENST00000332345 HSMCR30P0CW71 290 aa11.53□□□□□ -0.56
LIMS1-201ENST00000332345 FSTP19883 344 aa11.53□□□□□ -0.56
LIMS1-201ENST00000332345 GABRR1P24046 479 aa11.53□□□□□ -0.56
LIMS1-201ENST00000332345 MTNR1BP49286 362 aa11.53□□□□□ -0.56
LIMS1-201ENST00000332345 SNU13P55769 128 aaKnown RBP11.53□□□□□ -0.56
LIMS1-201ENST00000332345 HILS1P60008 231 aa11.53□□□□□ -0.56
LIMS1-201ENST00000332345 ACSM3Q53FZ2 586 aa11.53□□□□□ -0.56
LIMS1-201ENST00000332345 TMEM200BQ69YZ2 307 aa11.53□□□□□ -0.56
LIMS1-201ENST00000332345 ELP2Q6IA86 826 aa11.53□□□□□ -0.56
LIMS1-201ENST00000332345 CDH26Q8IXH8 852 aa11.53□□□□□ -0.56
LIMS1-201ENST00000332345 BCL6BQ8N143 479 aaPredicted RBP11.53□□□□□ -0.56
LIMS1-201ENST00000332345 OR8H2Q8N162 312 aa11.53□□□□□ -0.56
LIMS1-201ENST00000332345 OR4M1Q8NGD0 313 aa11.53□□□□□ -0.56
LIMS1-201ENST00000332345 ORAI1Q96D31 301 aa11.53□□□□□ -0.56
LIMS1-201ENST00000332345 DERL3Q96Q80 235 aa11.53□□□□□ -0.56
LIMS1-201ENST00000332345 MDFIQ99750 246 aa11.53□□□□□ -0.56
LIMS1-201ENST00000332345 YTHDF1Q9BYJ9 559 aaKnown RBP11.53□□□□□ -0.56
LIMS1-201ENST00000332345 FAM192AQ9GZU8 254 aa11.53□□□□□ -0.56
LIMS1-201ENST00000332345 METTL9Q9H1A3 318 aa11.53□□□□□ -0.56
LIMS1-201ENST00000332345 METTL8Q9H825 291 aaKnown RBP11.53□□□□□ -0.56
LIMS1-201ENST00000332345 EXOSC4Q9NPD3 245 aaKnown RBP11.53□□□□□ -0.56
LIMS1-201ENST00000332345 C19orf12Q9NSK7 152 aa11.53□□□□□ -0.56
LIMS1-201ENST00000332345 ING4Q9UNL4 249 aa11.53□□□□□ -0.56
LIMS1-201ENST00000332345 IGHV1-69DA0A0B4J2H0 117 aa11.52□□□□□ -0.57
LIMS1-201ENST00000332345 MEGF11A6BM72 1044 aa11.52□□□□□ -0.57
LIMS1-201ENST00000332345 GABRPO00591 440 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms