RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 CARD17Q5XLA6 110 aa11.75□□□□□ -0.53
CCDC88C-201ENST00000331194 ZDHHC19Q8WVZ1 309 aaPredicted RBP11.75□□□□□ -0.53
CCDC88C-201ENST00000331194 HAS2Q92819 552 aa11.75□□□□□ -0.53
CCDC88C-201ENST00000331194 KCNK17Q96T54 332 aa11.75□□□□□ -0.53
CCDC88C-201ENST00000331194 NUDT16L1Q9BRJ7 211 aaKnown RBP11.75□□□□□ -0.53
CCDC88C-201ENST00000331194 FAAP24Q9BTP7 215 aa11.75□□□□□ -0.53
CCDC88C-201ENST00000331194 NDUFAF3Q9BU61 184 aa11.75□□□□□ -0.53
CCDC88C-201ENST00000331194 A0A087WWC5 75 aa11.74□□□□□ -0.53
CCDC88C-201ENST00000331194 A6NIZ1 184 aa11.74□□□□□ -0.53
CCDC88C-201ENST00000331194 ZNF850A8MQ14 1090 aa11.74□□□□□ -0.53
CCDC88C-201ENST00000331194 H3BML4 177 aa11.74□□□□□ -0.53
CCDC88C-201ENST00000331194 CTSDP07339 412 aaPredicted RBP11.74□□□□□ -0.53
CCDC88C-201ENST00000331194 CD200P41217 278 aa11.74□□□□□ -0.53
CCDC88C-201ENST00000331194 RAP1BP61224 184 aa11.74□□□□□ -0.53
CCDC88C-201ENST00000331194 RAB11AP62491 216 aa11.74□□□□□ -0.53
CCDC88C-201ENST00000331194 RPL23AP62750 156 aaKnown RBP11.74□□□□□ -0.53
CCDC88C-201ENST00000331194 LANCL3Q6ZV70 420 aa11.74□□□□□ -0.53
CCDC88C-201ENST00000331194 LFNGQ8NES3 379 aa11.74□□□□□ -0.53
CCDC88C-201ENST00000331194 PIGTQ969N2 578 aa11.74□□□□□ -0.53
CCDC88C-201ENST00000331194 SNHG12Q9BXW3 62 aa11.74□□□□□ -0.53
CCDC88C-201ENST00000331194 LHFPL6Q9Y693 200 aa11.74□□□□□ -0.53
CCDC88C-201ENST00000331194 TMEM131Q92545 1883 aa11.74□□□□□ -0.53
CCDC88C-201ENST00000331194 OR4A8P0C604 315 aa11.74□□□□□ -0.53
CCDC88C-201ENST00000331194 JOSD1Q15040 202 aaPredicted RBP11.74□□□□□ -0.53
CCDC88C-201ENST00000331194 NECAP1Q8NC96 275 aa11.74□□□□□ -0.53
CCDC88C-201ENST00000331194 CALHM2Q9HA72 323 aa11.74□□□□□ -0.53
CCDC88C-201ENST00000331194 PLEKHJ1Q9NW61 149 aa11.74□□□□□ -0.53
CCDC88C-201ENST00000331194 IL17BQ9UHF5 180 aa11.74□□□□□ -0.53
CCDC88C-201ENST00000331194 ST8SIA3O43173 380 aa11.73□□□□□ -0.53
CCDC88C-201ENST00000331194 KLF8O95600 359 aaPredicted RBP11.73□□□□□ -0.53
CCDC88C-201ENST00000331194 PGCP20142 388 aa11.73□□□□□ -0.53
CCDC88C-201ENST00000331194 IGFBP4P22692 258 aa11.73□□□□□ -0.53
CCDC88C-201ENST00000331194 OR1D4P47884 311 aa11.73□□□□□ -0.53
CCDC88C-201ENST00000331194 PDCD1Q15116 288 aa11.73□□□□□ -0.53
CCDC88C-201ENST00000331194 PRSS8Q16651 343 aa11.73□□□□□ -0.53
CCDC88C-201ENST00000331194 ABCA11PQ4W5N1 156 aa11.73□□□□□ -0.53
CCDC88C-201ENST00000331194 GPR157Q5UAW9 335 aa11.73□□□□□ -0.53
CCDC88C-201ENST00000331194 ZNF776Q68DI1 518 aaPredicted RBP11.73□□□□□ -0.53
CCDC88C-201ENST00000331194 DEGS2Q6QHC5 323 aa11.73□□□□□ -0.53
CCDC88C-201ENST00000331194 FBXL14Q8N1E6 418 aa11.73□□□□□ -0.53
CCDC88C-201ENST00000331194 OR4X1Q8NH49 305 aa11.73□□□□□ -0.53
CCDC88C-201ENST00000331194 POC1BQ8TC44 478 aa11.73□□□□□ -0.53
CCDC88C-201ENST00000331194 C5orf34Q96MH7 638 aa11.73□□□□□ -0.53
CCDC88C-201ENST00000331194 GPR87Q9BY21 358 aa11.73□□□□□ -0.53
CCDC88C-201ENST00000331194 CBLN4Q9NTU7 201 aa11.73□□□□□ -0.53
CCDC88C-201ENST00000331194 VDAC3Q9Y277 283 aa11.73□□□□□ -0.53
CCDC88C-201ENST00000331194 A6NNC1 897 aa11.73□□□□□ -0.53
CCDC88C-201ENST00000331194 SEMA4FO95754 770 aa11.73□□□□□ -0.53
CCDC88C-201ENST00000331194 POLR2HP52434 150 aaKnown RBP11.73□□□□□ -0.53
CCDC88C-201ENST00000331194 HLA-DRB3P79483 266 aa11.73□□□□□ -0.53
CCDC88C-201ENST00000331194 OOSP2Q86WS3 158 aa11.73□□□□□ -0.53
CCDC88C-201ENST00000331194 FAM89BQ8N5H3 189 aa11.73□□□□□ -0.53
CCDC88C-201ENST00000331194 PLPP5Q8NEB5 264 aa11.73□□□□□ -0.53
CCDC88C-201ENST00000331194 OR2AJ1Q8NGZ0 328 aa11.73□□□□□ -0.53
CCDC88C-201ENST00000331194 BOD1Q96IK1 185 aa11.73□□□□□ -0.53
CCDC88C-201ENST00000331194 CDCA3Q99618 268 aaPredicted RBP11.73□□□□□ -0.53
CCDC88C-201ENST00000331194 GNG13Q9P2W3 67 aa11.73□□□□□ -0.53
CCDC88C-201ENST00000331194 CHD3Q12873 2000 aaKnown RBP11.73□□□□□ -0.53
CCDC88C-201ENST00000331194 PCDH15Q96QU1 1955 aa11.73□□□□□ -0.53
CCDC88C-201ENST00000331194 A0A1B0GW64 132 aa11.73□□□□□ -0.53
CCDC88C-201ENST00000331194 FOXI3A8MTJ6 420 aaPredicted RBP11.73□□□□□ -0.53
CCDC88C-201ENST00000331194 HNRNPA1P09651 372 aaKnown RBP eCLIP11.73□□□□□ -0.53
CCDC88C-201ENST00000331194 PNLIPP16233 465 aa11.73□□□□□ -0.53
CCDC88C-201ENST00000331194 FGF7P21781 194 aa11.73□□□□□ -0.53
CCDC88C-201ENST00000331194 SLC6A8P48029 635 aa11.73□□□□□ -0.53
CCDC88C-201ENST00000331194 HSF1Q00613 529 aa11.73□□□□□ -0.53
CCDC88C-201ENST00000331194 RUNX3Q13761 415 aa11.73□□□□□ -0.53
CCDC88C-201ENST00000331194 P2RY6Q15077 328 aa11.73□□□□□ -0.53
CCDC88C-201ENST00000331194 MPV17LQ2QL34 196 aa11.73□□□□□ -0.53
CCDC88C-201ENST00000331194 OR5R1Q8NH85 324 aa11.73□□□□□ -0.53
CCDC88C-201ENST00000331194 ADIPOR1Q96A54 375 aa11.73□□□□□ -0.53
CCDC88C-201ENST00000331194 TPSD1Q9BZJ3 242 aa11.73□□□□□ -0.53
CCDC88C-201ENST00000331194 NAA60Q9H7X0 242 aa11.73□□□□□ -0.53
CCDC88C-201ENST00000331194 ADAMTS9Q9P2N4 1935 aa11.72□□□□□ -0.53
CCDC88C-201ENST00000331194 C5orf67F2Z3F1 127 aa11.72□□□□□ -0.53
CCDC88C-201ENST00000331194 PHF1O43189 567 aaPredicted RBP11.72□□□□□ -0.53
CCDC88C-201ENST00000331194 ANGPTL7O43827 346 aa11.72□□□□□ -0.53
CCDC88C-201ENST00000331194 FCGR2AP12318 317 aa11.72□□□□□ -0.53
CCDC88C-201ENST00000331194 ZNF43P17038 809 aa11.72□□□□□ -0.53
CCDC88C-201ENST00000331194 EFNA3P52797 238 aa11.72□□□□□ -0.53
CCDC88C-201ENST00000331194 COL10A1Q03692 680 aa11.72□□□□□ -0.53
CCDC88C-201ENST00000331194 TLE3Q04726 772 aa11.72□□□□□ -0.53
CCDC88C-201ENST00000331194 HYAL1Q12794 435 aa11.72□□□□□ -0.53
CCDC88C-201ENST00000331194 C1orf87Q8N0U7 546 aa11.72□□□□□ -0.53
CCDC88C-201ENST00000331194 OR5C1Q8NGR4 320 aa11.72□□□□□ -0.53
CCDC88C-201ENST00000331194 GLRX2Q9NS18 164 aa11.72□□□□□ -0.53
CCDC88C-201ENST00000331194 KIAA1456Q9P272 454 aa11.72□□□□□ -0.53
CCDC88C-201ENST00000331194 C2orf16Q68DN1 1984 aa11.72□□□□□ -0.53
CCDC88C-201ENST00000331194 NKX2-6A6NCS4 301 aa11.72□□□□□ -0.53
CCDC88C-201ENST00000331194 ZFP92A6NM28 416 aa11.72□□□□□ -0.53
CCDC88C-201ENST00000331194 TOX3O15405 576 aaPredicted RBP11.72□□□□□ -0.53
CCDC88C-201ENST00000331194 ZNF728P0DKX0 622 aa11.72□□□□□ -0.53
CCDC88C-201ENST00000331194 FAHP16930 419 aa11.72□□□□□ -0.53
CCDC88C-201ENST00000331194 TUBG1P23258 451 aa11.72□□□□□ -0.53
CCDC88C-201ENST00000331194 TAF9Q16594 264 aa11.72□□□□□ -0.53
CCDC88C-201ENST00000331194 SLC22A25Q6T423 547 aa11.72□□□□□ -0.53
CCDC88C-201ENST00000331194 OR2C3Q8N628 320 aa11.72□□□□□ -0.53
CCDC88C-201ENST00000331194 SLC35G3Q8N808 338 aa11.72□□□□□ -0.53
CCDC88C-201ENST00000331194 CLDND2Q8NHS1 167 aa11.72□□□□□ -0.53
CCDC88C-201ENST00000331194 TWSG1Q9GZX9 223 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms