RNA–Protein interactions for RNA: ENST00000325307.11

HMGB3-201, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 3,560 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-201ENST00000325307 CHD6Q8TD26 2715 aa8.55□□□□□ -1.04
HMGB3-201ENST00000325307 PQLC2LA1A4F0 135 aa8.55□□□□□ -1.04
HMGB3-201ENST00000325307 H0YL77 283 aa8.55□□□□□ -1.04
HMGB3-201ENST00000325307 MPIG6BO95866 241 aa8.55□□□□□ -1.04
HMGB3-201ENST00000325307 CYB5AP00167 134 aa8.55□□□□□ -1.04
HMGB3-201ENST00000325307 EFNB2P52799 333 aa8.55□□□□□ -1.04
HMGB3-201ENST00000325307 RAB25P57735 213 aa8.55□□□□□ -1.04
HMGB3-201ENST00000325307 RPP30P78346 268 aaKnown RBP8.55□□□□□ -1.04
HMGB3-201ENST00000325307 HAGHLQ6PII5 290 aaPredicted RBP8.55□□□□□ -1.04
HMGB3-201ENST00000325307 PLET1Q6UQ28 207 aa8.55□□□□□ -1.04
HMGB3-201ENST00000325307 SLC25A26Q70HW3 274 aa8.55□□□□□ -1.04
HMGB3-201ENST00000325307 C1QL2Q7Z5L3 287 aa8.55□□□□□ -1.04
HMGB3-201ENST00000325307 BATF2Q8N1L9 274 aa8.55□□□□□ -1.04
HMGB3-201ENST00000325307 GTF3AQ92664 365 aaKnown RBP8.55□□□□□ -1.04
HMGB3-201ENST00000325307 NEUROG1Q92886 237 aa8.55□□□□□ -1.04
HMGB3-201ENST00000325307 MRPL24Q96A35 216 aaKnown RBP8.55□□□□□ -1.04
HMGB3-201ENST00000325307 S100A16Q96FQ6 103 aaKnown RBP8.55□□□□□ -1.04
HMGB3-201ENST00000325307 ATG5Q9H1Y0 275 aa8.55□□□□□ -1.04
HMGB3-201ENST00000325307 BANF2Q9H503 90 aa8.55□□□□□ -1.04
HMGB3-201ENST00000325307 NOP16Q9Y3C1 178 aaKnown RBP8.55□□□□□ -1.04
HMGB3-201ENST00000325307 OR5B21A6NL26 309 aa8.55□□□□□ -1.04
HMGB3-201ENST00000325307 TSPAN4O14817 238 aa8.55□□□□□ -1.04
HMGB3-201ENST00000325307 PLAUP00749 431 aa8.55□□□□□ -1.04
HMGB3-201ENST00000325307 IGHV3-13P01766 116 aa8.55□□□□□ -1.04
HMGB3-201ENST00000325307 CSTBP04080 98 aaKnown RBP8.55□□□□□ -1.04
HMGB3-201ENST00000325307 GRPP07492 148 aa8.55□□□□□ -1.04
HMGB3-201ENST00000325307 ZP3P21754 424 aa8.55□□□□□ -1.04
HMGB3-201ENST00000325307 MZT2BQ6NZ67 158 aa8.55□□□□□ -1.04
HMGB3-201ENST00000325307 ZNF611Q8N823 705 aa8.55□□□□□ -1.04
HMGB3-201ENST00000325307 OR51F2Q8NH61 342 aa8.55□□□□□ -1.04
HMGB3-201ENST00000325307 SSC4DQ8WTU2 575 aa8.55□□□□□ -1.04
HMGB3-201ENST00000325307 FGF23Q9GZV9 251 aaPredicted RBP8.55□□□□□ -1.04
HMGB3-201ENST00000325307 CST11Q9H112 138 aa8.55□□□□□ -1.04
HMGB3-201ENST00000325307 METTL9Q9H1A3 318 aa8.55□□□□□ -1.04
HMGB3-201ENST00000325307 IFT46Q9NQC8 304 aa8.55□□□□□ -1.04
HMGB3-201ENST00000325307 ING3Q9NXR8 418 aa8.55□□□□□ -1.04
HMGB3-201ENST00000325307 FAM240BA0A1B0GVZ2 78 aa8.54□□□□□ -1.04
HMGB3-201ENST00000325307 SHISA9B4DS77 424 aa8.54□□□□□ -1.04
HMGB3-201ENST00000325307 F5H5P2 479 aa8.54□□□□□ -1.04
HMGB3-201ENST00000325307 C19orf84I3L1E1 186 aa8.54□□□□□ -1.04
HMGB3-201ENST00000325307 HTR3BO95264 441 aa8.54□□□□□ -1.04
HMGB3-201ENST00000325307 UBBP0CG47 229 aa8.54□□□□□ -1.04
HMGB3-201ENST00000325307 RNF224P0DH78 156 aa8.54□□□□□ -1.04
HMGB3-201ENST00000325307 VSIG8P0DPA2 414 aa8.54□□□□□ -1.04
HMGB3-201ENST00000325307 CD37P11049 281 aa8.54□□□□□ -1.04
HMGB3-201ENST00000325307 SCAND1P57086 179 aa8.54□□□□□ -1.04
HMGB3-201ENST00000325307 PDZK1IP1Q13113 114 aa8.54□□□□□ -1.04
HMGB3-201ENST00000325307 ZMYND11Q15326 602 aa8.54□□□□□ -1.04
HMGB3-201ENST00000325307 LIN54Q6MZP7 749 aa8.54□□□□□ -1.04
HMGB3-201ENST00000325307 ZNF573Q86YE8 665 aa8.54□□□□□ -1.04
HMGB3-201ENST00000325307 CALHM1Q8IU99 346 aa8.54□□□□□ -1.04
HMGB3-201ENST00000325307 REG4Q9BYZ8 158 aa8.54□□□□□ -1.04
HMGB3-201ENST00000325307 KMT2BQ9UMN6 2715 aaPredicted RBP8.54□□□□□ -1.04
HMGB3-201ENST00000325307 A6NLC8 198 aa8.54□□□□□ -1.04
HMGB3-201ENST00000325307 SPRY3O43610 288 aa8.54□□□□□ -1.04
HMGB3-201ENST00000325307 KDM4BO94953 1096 aa8.54□□□□□ -1.04
HMGB3-201ENST00000325307 ALDH3B1P43353 468 aa8.54□□□□□ -1.04
HMGB3-201ENST00000325307 MAB21L1Q13394 359 aa8.54□□□□□ -1.04
HMGB3-201ENST00000325307 COTL1Q14019 142 aa8.54□□□□□ -1.04
HMGB3-201ENST00000325307 ZNF273Q14593 569 aa8.54□□□□□ -1.04
HMGB3-201ENST00000325307 GRK1Q15835 563 aa8.54□□□□□ -1.04
HMGB3-201ENST00000325307 ADIPOQQ15848 244 aa8.54□□□□□ -1.04
HMGB3-201ENST00000325307 Q6ZR03 302 aa8.54□□□□□ -1.04
HMGB3-201ENST00000325307 KCNG3Q8TAE7 436 aa8.54□□□□□ -1.04
HMGB3-201ENST00000325307 CREB3L1Q96BA8 519 aa8.54□□□□□ -1.04
HMGB3-201ENST00000325307 HS3ST6Q96QI5 342 aa8.54□□□□□ -1.04
HMGB3-201ENST00000325307 ZNF442Q9H7R0 627 aa8.54□□□□□ -1.04
HMGB3-201ENST00000325307 RAB22AQ9UL26 194 aa8.54□□□□□ -1.04
HMGB3-201ENST00000325307 MLNRO43193 412 aa8.53□□□□□ -1.04
HMGB3-201ENST00000325307 SIAH2O43255 324 aa8.53□□□□□ -1.04
HMGB3-201ENST00000325307 ORC5O43913 435 aa8.53□□□□□ -1.04
HMGB3-201ENST00000325307 ACAA1P09110 424 aaPredicted RBP8.53□□□□□ -1.04
HMGB3-201ENST00000325307 CDK2P24941 298 aa8.53□□□□□ -1.04
HMGB3-201ENST00000325307 SERPINF1P36955 418 aa8.53□□□□□ -1.04
HMGB3-201ENST00000325307 ZP1P60852 638 aa8.53□□□□□ -1.04
HMGB3-201ENST00000325307 DNM1P46Q6ZS02 220 aa8.53□□□□□ -1.04
HMGB3-201ENST00000325307 DMRTC2Q8IXT2 367 aaPredicted RBP8.53□□□□□ -1.04
HMGB3-201ENST00000325307 ACBD4Q8NC06 268 aa8.53□□□□□ -1.04
HMGB3-201ENST00000325307 TMEM104Q8NE00 496 aa8.53□□□□□ -1.04
HMGB3-201ENST00000325307 RAB40AQ8WXH6 277 aa8.53□□□□□ -1.04
HMGB3-201ENST00000325307 ELMOD3Q96FG2 381 aa8.53□□□□□ -1.04
HMGB3-201ENST00000325307 TMEM59Q9BXS4 323 aa8.53□□□□□ -1.04
HMGB3-201ENST00000325307 ZC4H2Q9NQZ6 224 aa8.53□□□□□ -1.04
HMGB3-201ENST00000325307 CISD1Q9NZ45 108 aaKnown RBP8.53□□□□□ -1.04
HMGB3-201ENST00000325307 ABCA4P78363 2273 aa8.53□□□□□ -1.04
HMGB3-201ENST00000325307 IGLV3-9A0A075B6K5 115 aa8.53□□□□□ -1.04
HMGB3-201ENST00000325307 A0A1W2PP11 408 aa8.53□□□□□ -1.04
HMGB3-201ENST00000325307 METTL21EPA6NDL7 271 aa8.53□□□□□ -1.04
HMGB3-201ENST00000325307 DEFB108AA8MXU0 73 aa8.53□□□□□ -1.04
HMGB3-201ENST00000325307 E7EQL1 145 aa8.53□□□□□ -1.04
HMGB3-201ENST00000325307 TMEM69Q5SWH9 247 aa8.53□□□□□ -1.04
HMGB3-201ENST00000325307 CRIP3Q6Q6R5 217 aa8.53□□□□□ -1.04
HMGB3-201ENST00000325307 OR4D10Q8NGI6 311 aa8.53□□□□□ -1.04
HMGB3-201ENST00000325307 SLAMF9Q96A28 289 aa8.53□□□□□ -1.04
HMGB3-201ENST00000325307 CXXC4Q9H2H0 198 aa8.53□□□□□ -1.04
HMGB3-201ENST00000325307 UFSP2Q9NUQ7 469 aa8.53□□□□□ -1.04
HMGB3-201ENST00000325307 GHRLQ9UBU3 117 aa8.53□□□□□ -1.04
HMGB3-201ENST00000325307 HSPB11Q9Y547 144 aa8.53□□□□□ -1.04
HMGB3-201ENST00000325307 PKDREJQ9NTG1 2253 aa8.53□□□□□ -1.04
HMGB3-201ENST00000325307 MT-ND4P03905 459 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms