RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 NKX6-2Q9C056 277 aaPredicted RBP14.4□□□□□ -0.1
VPS54-201ENST00000272322 GJE1A6NN92 205 aa14.39□□□□□ -0.11
VPS54-201ENST00000272322 NME2P1O60361 137 aa14.39□□□□□ -0.11
VPS54-201ENST00000272322 ADCYAP1P18509 176 aa14.39□□□□□ -0.11
VPS54-201ENST00000272322 ZNF345Q14585 488 aa14.39□□□□□ -0.11
VPS54-201ENST00000272322 LHFPL1Q86WI0 220 aa14.39□□□□□ -0.11
VPS54-201ENST00000272322 ZFP82Q8N141 532 aa14.39□□□□□ -0.11
VPS54-201ENST00000272322 SSC4DQ8WTU2 575 aa14.39□□□□□ -0.11
VPS54-201ENST00000272322 C20orf24Q9BUV8 137 aa14.39□□□□□ -0.11
VPS54-201ENST00000272322 FBXL17Q9UF56 701 aa14.39□□□□□ -0.11
VPS54-201ENST00000272322 RCL1Q9Y2P8 373 aaKnown RBP14.39□□□□□ -0.11
VPS54-201ENST00000272322 IFNA21P01568 189 aa14.39□□□□□ -0.11
VPS54-201ENST00000272322 FCGR3AP08637 254 aa14.39□□□□□ -0.11
VPS54-201ENST00000272322 CRYGSP22914 178 aa14.39□□□□□ -0.11
VPS54-201ENST00000272322 TMEM33P57088 247 aa14.39□□□□□ -0.11
VPS54-201ENST00000272322 SPEM2Q0P670 501 aa14.39□□□□□ -0.11
VPS54-201ENST00000272322 CLINT1Q14677 625 aa14.39□□□□□ -0.11
VPS54-201ENST00000272322 PRSS54Q6PEW0 395 aa14.39□□□□□ -0.11
VPS54-201ENST00000272322 UBALD2Q8IYN6 164 aa14.39□□□□□ -0.11
VPS54-201ENST00000272322 OR52M1Q8NGK5 317 aa14.39□□□□□ -0.11
VPS54-201ENST00000272322 IL1F10Q8WWZ1 152 aa14.39□□□□□ -0.11
VPS54-201ENST00000272322 PSMF1Q92530 271 aa14.39□□□□□ -0.11
VPS54-201ENST00000272322 SCGB3A2Q96PL1 93 aa14.39□□□□□ -0.11
VPS54-201ENST00000272322 NMES1Q9C002 83 aa14.39□□□□□ -0.11
VPS54-201ENST00000272322 RAB18Q9NP72 206 aa14.39□□□□□ -0.11
VPS54-201ENST00000272322 COL5A1P20908 1838 aaPredicted RBP14.39□□□□□ -0.11
VPS54-201ENST00000272322 ZNF708P17019 499 aa14.39□□□□□ -0.11
VPS54-201ENST00000272322 OTX1P32242 354 aaPredicted RBP14.39□□□□□ -0.11
VPS54-201ENST00000272322 IKZF1Q13422 519 aa14.39□□□□□ -0.11
VPS54-201ENST00000272322 FAHD2BQ6P2I3 314 aaPredicted RBP14.39□□□□□ -0.11
VPS54-201ENST00000272322 FAHD2AQ96GK7 314 aa14.39□□□□□ -0.11
VPS54-201ENST00000272322 ACACAQ13085 2346 aa14.39□□□□□ -0.11
VPS54-201ENST00000272322 LILRA1O75019 489 aa14.38□□□□□ -0.11
VPS54-201ENST00000272322 LPAR6P43657 344 aa14.38□□□□□ -0.11
VPS54-201ENST00000272322 SMCO1Q147U7 214 aa14.38□□□□□ -0.11
VPS54-201ENST00000272322 ACTBL2Q562R1 376 aa14.38□□□□□ -0.11
VPS54-201ENST00000272322 LOC102725191A0A1B0GVB3 256 aa14.38□□□□□ -0.11
VPS54-201ENST00000272322 LNP1A1A4G5 178 aa14.38□□□□□ -0.11
VPS54-201ENST00000272322 MPLP40238 635 aa14.38□□□□□ -0.11
VPS54-201ENST00000272322 NHLH2Q02577 135 aa14.38□□□□□ -0.11
VPS54-201ENST00000272322 PDZK1IP1Q13113 114 aa14.38□□□□□ -0.11
VPS54-201ENST00000272322 ZNF239Q16600 458 aaKnown RBP14.38□□□□□ -0.11
VPS54-201ENST00000272322 IZUMO4Q1ZYL8 232 aa14.38□□□□□ -0.11
VPS54-201ENST00000272322 IL22RA1Q8N6P7 574 aa14.38□□□□□ -0.11
VPS54-201ENST00000272322 OR4A4PQ8NGN8 299 aa14.38□□□□□ -0.11
VPS54-201ENST00000272322 RNF141Q8WVD5 230 aa14.38□□□□□ -0.11
VPS54-201ENST00000272322 C1orf123Q9NWV4 160 aa14.38□□□□□ -0.11
VPS54-201ENST00000272322 FBLN5Q9UBX5 448 aa14.38□□□□□ -0.11
VPS54-201ENST00000272322 ONECUT2O95948 504 aa14.38□□□□□ -0.11
VPS54-201ENST00000272322 BCL3P20749 454 aa14.38□□□□□ -0.11
VPS54-201ENST00000272322 CBX5P45973 191 aa14.38□□□□□ -0.11
VPS54-201ENST00000272322 CNN3Q15417 329 aaKnown RBP14.38□□□□□ -0.11
VPS54-201ENST00000272322 C2CD4CQ8TF44 421 aa14.38□□□□□ -0.11
VPS54-201ENST00000272322 TMEM218A2RU14 115 aa14.37□□□□□ -0.11
VPS54-201ENST00000272322 C9orf172C9J069 976 aa14.37□□□□□ -0.11
VPS54-201ENST00000272322 PRH1P02810 166 aa14.37□□□□□ -0.11
VPS54-201ENST00000272322 HLA-GP17693 338 aa14.37□□□□□ -0.11
VPS54-201ENST00000272322 HIKESHIQ53FT3 197 aa14.37□□□□□ -0.11
VPS54-201ENST00000272322 POC1AQ8NBT0 407 aa14.37□□□□□ -0.11
VPS54-201ENST00000272322 KCNIP3Q9Y2W7 256 aa14.37□□□□□ -0.11
VPS54-201ENST00000272322 DOCK11Q5JSL3 2073 aa14.37□□□□□ -0.11
VPS54-201ENST00000272322 HSD17B6O14756 317 aa14.37□□□□□ -0.11
VPS54-201ENST00000272322 APOC1P02654 83 aa14.37□□□□□ -0.11
VPS54-201ENST00000272322 NAT1P18440 290 aa14.37□□□□□ -0.11
VPS54-201ENST00000272322 AADACP22760 399 aa14.37□□□□□ -0.11
VPS54-201ENST00000272322 CAV2P51636 162 aa14.37□□□□□ -0.11
VPS54-201ENST00000272322 MALLQ13021 153 aa14.37□□□□□ -0.11
VPS54-201ENST00000272322 HAGHLQ6PII5 290 aaPredicted RBP14.37□□□□□ -0.11
VPS54-201ENST00000272322 GCNT2Q8N0V5 402 aa14.37□□□□□ -0.11
VPS54-201ENST00000272322 TMEM217Q8N7C4 229 aa14.37□□□□□ -0.11
VPS54-201ENST00000272322 LDAHQ9H6V9 325 aa14.37□□□□□ -0.11
VPS54-201ENST00000272322 SLC2A9Q9NRM0 540 aa14.37□□□□□ -0.11
VPS54-201ENST00000272322 STARD10Q9Y365 291 aa14.37□□□□□ -0.11
VPS54-201ENST00000272322 ADGRG4Q8IZF6 3080 aa14.37□□□□□ -0.11
VPS54-201ENST00000272322 MED12LQ86YW9 2145 aa14.37□□□□□ -0.11
VPS54-201ENST00000272322 A0A1W2PNU3 283 aaPredicted RBP14.36□□□□□ -0.11
VPS54-201ENST00000272322 TRIM77I1YAP6 450 aa14.36□□□□□ -0.11
VPS54-201ENST00000272322 DNASE2O00115 360 aaPredicted RBP14.36□□□□□ -0.11
VPS54-201ENST00000272322 SCTP09683 121 aa14.36□□□□□ -0.11
VPS54-201ENST00000272322 FKBP2P26885 142 aaKnown RBP14.36□□□□□ -0.11
VPS54-201ENST00000272322 NPBWR1P48145 328 aa14.36□□□□□ -0.11
VPS54-201ENST00000272322 PPT1P50897 306 aa14.36□□□□□ -0.11
VPS54-201ENST00000272322 HERV-K104P61576 105 aa14.36□□□□□ -0.11
VPS54-201ENST00000272322 OR1C1Q15619 314 aa14.36□□□□□ -0.11
VPS54-201ENST00000272322 ARL11Q969Q4 196 aa14.36□□□□□ -0.11
VPS54-201ENST00000272322 SH2D2AQ9NP31 389 aa14.36□□□□□ -0.11
VPS54-201ENST00000272322 CTSSP25774 331 aa14.36□□□□□ -0.11
VPS54-201ENST00000272322 TFAP2EQ6VUC0 442 aa14.36□□□□□ -0.11
VPS54-201ENST00000272322 Q6ZPA2 131 aa14.36□□□□□ -0.11
VPS54-201ENST00000272322 P4HA3Q7Z4N8 544 aa14.36□□□□□ -0.11
VPS54-201ENST00000272322 WDR5BQ86VZ2 330 aa14.36□□□□□ -0.11
VPS54-201ENST00000272322 BCL2L14Q9BZR8 327 aa14.36□□□□□ -0.11
VPS54-201ENST00000272322 PRO3102Q9H379 93 aa14.36□□□□□ -0.11
VPS54-201ENST00000272322 NECAP2Q9NVZ3 263 aa14.36□□□□□ -0.11
VPS54-201ENST00000272322 EIF3GO75821 320 aaKnown RBP eCLIP14.36□□□□□ -0.11
VPS54-201ENST00000272322 HKR1P10072 659 aa14.36□□□□□ -0.11
VPS54-201ENST00000272322 EPHA1P21709 976 aa14.36□□□□□ -0.11
VPS54-201ENST00000272322 CHATP28329 748 aa14.36□□□□□ -0.11
VPS54-201ENST00000272322 RAB1AP62820 205 aa14.36□□□□□ -0.11
VPS54-201ENST00000272322 MRPL21Q7Z2W9 205 aaKnown RBP14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms