RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 HS3ST6Q96QI5 342 aa11.97□□□□□ -0.49
SS18-201ENST00000269137 TAAR3PQ9P1P4 343 aa11.97□□□□□ -0.49
SS18-201ENST00000269137 ATP23Q9Y6H3 246 aa11.97□□□□□ -0.49
SS18-201ENST00000269137 ZSCAN5BA6NJL1 495 aa11.96□□□□□ -0.49
SS18-201ENST00000269137 VSTM5A8MXK1 200 aa11.96□□□□□ -0.49
SS18-201ENST00000269137 ZNF736B4DX44 427 aaPredicted RBP11.96□□□□□ -0.49
SS18-201ENST00000269137 OR7C1O76099 320 aaPredicted RBP11.96□□□□□ -0.49
SS18-201ENST00000269137 TCRBP04435 133 aa11.96□□□□□ -0.49
SS18-201ENST00000269137 PRKACAP17612 351 aa11.96□□□□□ -0.49
SS18-201ENST00000269137 TBPP20226 339 aa11.96□□□□□ -0.49
SS18-201ENST00000269137 OR2Z1Q8NG97 314 aa11.96□□□□□ -0.49
SS18-201ENST00000269137 LINC01560Q8TB33 94 aa11.96□□□□□ -0.49
SS18-201ENST00000269137 EMG1Q92979 244 aaKnown RBP11.96□□□□□ -0.49
SS18-201ENST00000269137 FBXW5Q969U6 566 aa11.96□□□□□ -0.49
SS18-201ENST00000269137 UPRTQ96BW1 309 aa11.96□□□□□ -0.49
SS18-201ENST00000269137 PLPPR2Q96GM1 343 aa11.96□□□□□ -0.49
SS18-201ENST00000269137 ZNF488Q96MN9 340 aa11.96□□□□□ -0.49
SS18-201ENST00000269137 IFT46Q9NQC8 304 aa11.96□□□□□ -0.49
SS18-201ENST00000269137 ZNF581Q9P0T4 197 aa11.96□□□□□ -0.49
SS18-201ENST00000269137 RCC2Q9P258 522 aaKnown RBP11.96□□□□□ -0.49
SS18-201ENST00000269137 NUBP2Q9Y5Y2 271 aa11.96□□□□□ -0.49
SS18-201ENST00000269137 SHISA9B4DS77 424 aa11.95□□□□□ -0.5
SS18-201ENST00000269137 CCR6P51684 374 aa11.95□□□□□ -0.5
SS18-201ENST00000269137 BTG1P62324 171 aa11.95□□□□□ -0.5
SS18-201ENST00000269137 ADIPOQQ15848 244 aa11.95□□□□□ -0.5
SS18-201ENST00000269137 BEX5Q5H9J7 111 aa11.95□□□□□ -0.5
SS18-201ENST00000269137 SFRP4Q6FHJ7 346 aaPredicted RBP11.95□□□□□ -0.5
SS18-201ENST00000269137 DMRTC2Q8IXT2 367 aaPredicted RBP11.95□□□□□ -0.5
SS18-201ENST00000269137 BATF2Q8N1L9 274 aa11.95□□□□□ -0.5
SS18-201ENST00000269137 GVQW1Q8N7I0 195 aa11.95□□□□□ -0.5
SS18-201ENST00000269137 POC1AQ8NBT0 407 aa11.95□□□□□ -0.5
SS18-201ENST00000269137 GTF3AQ92664 365 aaKnown RBP11.95□□□□□ -0.5
SS18-201ENST00000269137 ELMOD3Q96FG2 381 aa11.95□□□□□ -0.5
SS18-201ENST00000269137 CYYR1Q96J86 154 aa11.95□□□□□ -0.5
SS18-201ENST00000269137 SULT4A1Q9BR01 284 aa11.95□□□□□ -0.5
SS18-201ENST00000269137 FAAP24Q9BTP7 215 aa11.95□□□□□ -0.5
SS18-201ENST00000269137 IFT22Q9H7X7 185 aa11.95□□□□□ -0.5
SS18-201ENST00000269137 SPACA1Q9HBV2 294 aa11.95□□□□□ -0.5
SS18-201ENST00000269137 MCUBQ9NWR8 336 aa11.95□□□□□ -0.5
SS18-201ENST00000269137 POU2F3Q9UKI9 436 aa11.95□□□□□ -0.5
SS18-201ENST00000269137 HCFC1P51610 2035 aa11.95□□□□□ -0.5
SS18-201ENST00000269137 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP11.95□□□□□ -0.5
SS18-201ENST00000269137 TUBAL3A6NHL2 446 aa11.95□□□□□ -0.5
SS18-201ENST00000269137 RAB3DO95716 219 aa11.95□□□□□ -0.5
SS18-201ENST00000269137 CD3EP07766 207 aa11.95□□□□□ -0.5
SS18-201ENST00000269137 OR4A8P0C604 315 aa11.95□□□□□ -0.5
SS18-201ENST00000269137 HLA-DMAP28067 261 aa11.95□□□□□ -0.5
SS18-201ENST00000269137 RAG2P55895 527 aa11.95□□□□□ -0.5
SS18-201ENST00000269137 MEF2DQ14814 521 aa11.95□□□□□ -0.5
SS18-201ENST00000269137 ADAM5Q6NVV9 412 aa11.95□□□□□ -0.5
SS18-201ENST00000269137 BTN2A1Q7KYR7 527 aa11.95□□□□□ -0.5
SS18-201ENST00000269137 HOGA1Q86XE5 327 aa11.95□□□□□ -0.5
SS18-201ENST00000269137 OR4S1Q8NGB4 309 aa11.95□□□□□ -0.5
SS18-201ENST00000269137 OR4D10Q8NGI6 311 aa11.95□□□□□ -0.5
SS18-201ENST00000269137 HES4Q9HCC6 221 aa11.95□□□□□ -0.5
SS18-201ENST00000269137 IL36RNQ9UBH0 155 aa11.95□□□□□ -0.5
SS18-201ENST00000269137 AK3Q9UIJ7 227 aa11.95□□□□□ -0.5
SS18-201ENST00000269137 ZDHHC8Q9ULC8 765 aa11.95□□□□□ -0.5
SS18-201ENST00000269137 PLEKHA6Q9Y2H5 1048 aa11.95□□□□□ -0.5
SS18-201ENST00000269137 INMT-MINDY4F8WBC2 141 aa11.94□□□□□ -0.5
SS18-201ENST00000269137 CCNKO75909 580 aa11.94□□□□□ -0.5
SS18-201ENST00000269137 CLDN14O95500 239 aa11.94□□□□□ -0.5
SS18-201ENST00000269137 GLAP06280 429 aa11.94□□□□□ -0.5
SS18-201ENST00000269137 FCER2P06734 321 aa11.94□□□□□ -0.5
SS18-201ENST00000269137 DTYMKP23919 212 aa11.94□□□□□ -0.5
SS18-201ENST00000269137 CFHR2P36980 270 aa11.94□□□□□ -0.5
SS18-201ENST00000269137 ZNF81P51508 661 aa11.94□□□□□ -0.5
SS18-201ENST00000269137 SNTB1Q13884 538 aaKnown RBP11.94□□□□□ -0.5
SS18-201ENST00000269137 ZNF146Q15072 292 aa11.94□□□□□ -0.5
SS18-201ENST00000269137 MPPED2Q15777 294 aa11.94□□□□□ -0.5
SS18-201ENST00000269137 NKPD1Q17RQ9 610 aa11.94□□□□□ -0.5
SS18-201ENST00000269137 RSBN1Q5VWQ0 802 aaPredicted RBP11.94□□□□□ -0.5
SS18-201ENST00000269137 PRAMEF6Q5VXH4 476 aa11.94□□□□□ -0.5
SS18-201ENST00000269137 FAAP20Q6NZ36 180 aa11.94□□□□□ -0.5
SS18-201ENST00000269137 WDR82Q6UXN9 313 aa11.94□□□□□ -0.5
SS18-201ENST00000269137 ITLN2Q8WWU7 325 aaPredicted RBP11.94□□□□□ -0.5
SS18-201ENST00000269137 SNAPC3Q92966 411 aa11.94□□□□□ -0.5
SS18-201ENST00000269137 CHST6Q9GZX3 395 aa11.94□□□□□ -0.5
SS18-201ENST00000269137 NUDT15Q9NV35 164 aa11.94□□□□□ -0.5
SS18-201ENST00000269137 IGHV3-64DA0A0J9YX35 117 aa11.93□□□□□ -0.5
SS18-201ENST00000269137 A6NLC8 198 aa11.93□□□□□ -0.5
SS18-201ENST00000269137 NXPH2O95156 264 aa11.93□□□□□ -0.5
SS18-201ENST00000269137 ADH4P08319 380 aa11.93□□□□□ -0.5
SS18-201ENST00000269137 GATA4P43694 442 aa11.93□□□□□ -0.5
SS18-201ENST00000269137 IKZF1Q13422 519 aa11.93□□□□□ -0.5
SS18-201ENST00000269137 PDCD1Q15116 288 aa11.93□□□□□ -0.5
SS18-201ENST00000269137 ACTBL2Q562R1 376 aa11.93□□□□□ -0.5
SS18-201ENST00000269137 RNASE10Q5GAN6 216 aaKnown RBP11.93□□□□□ -0.5
SS18-201ENST00000269137 ATAD3CQ5T2N8 411 aa11.93□□□□□ -0.5
SS18-201ENST00000269137 OR52W1Q6IF63 320 aa11.93□□□□□ -0.5
SS18-201ENST00000269137 ZNF782Q6ZMW2 699 aaPredicted RBP11.93□□□□□ -0.5
SS18-201ENST00000269137 OR10Z1Q8NGY1 313 aa11.93□□□□□ -0.5
SS18-201ENST00000269137 MEGF10Q96KG7 1140 aa11.93□□□□□ -0.5
SS18-201ENST00000269137 CMSS1Q9BQ75 279 aaKnown RBP11.93□□□□□ -0.5
SS18-201ENST00000269137 TINAGL1Q9GZM7 467 aaPredicted RBP11.93□□□□□ -0.5
SS18-201ENST00000269137 NPDC1Q9NQX5 325 aaPredicted RBP11.93□□□□□ -0.5
SS18-201ENST00000269137 EDARQ9UNE0 448 aa11.93□□□□□ -0.5
SS18-201ENST00000269137 ABCA4P78363 2273 aa11.93□□□□□ -0.5
SS18-201ENST00000269137 CHD3Q12873 2000 aaKnown RBP11.93□□□□□ -0.5
SS18-201ENST00000269137 PKDREJQ9NTG1 2253 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms