RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 SEC11CQ9BY50 192 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 NKX2-4Q9H2Z4 354 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 TRPM7Q96QT4 1865 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 BIVM-ERCC5R4GMW8 1640 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 CEP192Q8TEP8 1941 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 A0A0G2JK05 382 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 C9JAW5 83 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 GHRHP01286 108 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 SEMG1P04279 462 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 SP1P08047 785 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 GDNFP39905 211 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 TCTEX1D4Q5JR98 221 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 BMPERQ8N8U9 685 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 OR5M3Q8NGP4 307 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 PPTC7Q8NI37 304 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 CKLFQ9UBR5 152 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 LGALS13Q9UHV8 139 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 FUT9Q9Y231 359 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 HIGD1AQ9Y241 93 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 A0A1B0GWB2 263 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 A0A1W2PP11 408 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 TCRBV9S1A1TA0A576 114 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 TMEM150CB9EJG8 249 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 CT45A8P0DMV1 189 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 CT45A9P0DMV2 189 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 ZBTB25P24278 435 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 OTX1P32242 354 aaPredicted RBP3.16□□□□□ -1.9
SCN1A-221ENST00000641996 SFTPDP35247 375 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 CD69Q07108 199 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 CT45A2Q5DJT8 189 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 DOK3Q7L591 496 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 PHF13Q86YI8 300 aaPredicted RBP3.16□□□□□ -1.9
SCN1A-221ENST00000641996 ZC3H3Q8IXZ2 948 aaKnown RBP3.16□□□□□ -1.9
SCN1A-221ENST00000641996 ARHGEF39Q8N4T4 335 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 OR11G2Q8NGC1 345 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 OR10AG1Q8NH19 301 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 IL17DQ8TAD2 202 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 SECTM1Q8WVN6 248 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 OR5P2Q8WZ92 322 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 SLAMF6Q96DU3 332 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 OR2H1Q9GZK4 316 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 HEBP2Q9Y5Z4 205 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 A0A096LPE4 126 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 A0A1W2PPZ6 126 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 A0A1W2PQF6 199 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 TTC24A2A3L6 582 aaPredicted RBP3.16□□□□□ -1.9
SCN1A-221ENST00000641996 LDB3O75112 727 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 CATP04040 527 aaKnown RBP3.16□□□□□ -1.9
SCN1A-221ENST00000641996 HTR6P50406 440 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 FOXA1P55317 472 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 RPS25P62851 125 aaKnown RBP3.16□□□□□ -1.9
SCN1A-221ENST00000641996 SFTA2Q6UW10 78 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 ALG14Q96F25 216 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 TECRQ9NZ01 308 aaKnown RBP3.16□□□□□ -1.9
SCN1A-221ENST00000641996 FAM236DA0A1B0GTK5 79 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 ANTXRLA6NF34 631 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 NPIPB9F8W1W9 429 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 NUDT3O95989 172 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 FAM236CP0DP71 79 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 MPGP29372 298 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 TGFBR1P36897 503 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 DLX6P56179 175 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 SIRPAP78324 504 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 MEF2CQ06413 473 aaPredicted RBP3.16□□□□□ -1.9
SCN1A-221ENST00000641996 MBOAT2Q6ZWT7 520 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 DMBX1Q8NFW5 382 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 CD99L2Q8TCZ2 262 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 NRIP2Q9BQI9 281 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 SEBOXQ9HB31 216 aaPredicted RBP3.16□□□□□ -1.9
SCN1A-221ENST00000641996 ETV7Q9Y603 341 aa3.16□□□□□ -1.9
SCN1A-221ENST00000641996 NALCNQ8IZF0 1738 aa3.15□□□□□ -1.9
SCN1A-221ENST00000641996 A0A0D9SFI3 127 aa3.15□□□□□ -1.9
SCN1A-221ENST00000641996 OR5B21A6NL26 309 aa3.15□□□□□ -1.9
SCN1A-221ENST00000641996 SIX3O95343 332 aaPredicted RBP3.15□□□□□ -1.9
SCN1A-221ENST00000641996 SLC2A10O95528 541 aa3.15□□□□□ -1.9
SCN1A-221ENST00000641996 SLC10A2Q12908 348 aaPredicted RBP3.15□□□□□ -1.9
SCN1A-221ENST00000641996 MELKQ14680 651 aa3.15□□□□□ -1.9
SCN1A-221ENST00000641996 TMEM184AQ6ZMB5 413 aa3.15□□□□□ -1.9
SCN1A-221ENST00000641996 IGDCC3Q8IVU1 814 aa3.15□□□□□ -1.9
SCN1A-221ENST00000641996 B3GALNT2Q8NCR0 500 aa3.15□□□□□ -1.9
SCN1A-221ENST00000641996 OR51F2Q8NH61 342 aa3.15□□□□□ -1.9
SCN1A-221ENST00000641996 IL23AQ9NPF7 189 aa3.15□□□□□ -1.9
SCN1A-221ENST00000641996 ANKRD10Q9NXR5 420 aa3.15□□□□□ -1.9
SCN1A-221ENST00000641996 CDHR4A6H8M9 788 aa3.15□□□□□ -1.9
SCN1A-221ENST00000641996 CLDN11O75508 207 aa3.15□□□□□ -1.9
SCN1A-221ENST00000641996 ZNF286BP0CG31 522 aa3.15□□□□□ -1.9
SCN1A-221ENST00000641996 PGA3P0DJD8 388 aa3.15□□□□□ -1.9
SCN1A-221ENST00000641996 ERGP11308 486 aa3.15□□□□□ -1.9
SCN1A-221ENST00000641996 TNFSF8P32971 234 aa3.15□□□□□ -1.9
SCN1A-221ENST00000641996 CD276Q5ZPR3 534 aa3.15□□□□□ -1.9
SCN1A-221ENST00000641996 AMIGO3Q86WK7 504 aa3.15□□□□□ -1.9
SCN1A-221ENST00000641996 ZNF664Q8N3J9 261 aa3.15□□□□□ -1.9
SCN1A-221ENST00000641996 NUP37Q8NFH4 326 aa3.15□□□□□ -1.9
SCN1A-221ENST00000641996 OR5D14Q8NGL3 314 aa3.15□□□□□ -1.9
SCN1A-221ENST00000641996 TMED6Q8WW62 240 aa3.15□□□□□ -1.9
SCN1A-221ENST00000641996 PIGTQ969N2 578 aa3.15□□□□□ -1.9
SCN1A-221ENST00000641996 DDIT4LQ96D03 193 aa3.15□□□□□ -1.9
SCN1A-221ENST00000641996 NDFIP1Q9BT67 221 aa3.15□□□□□ -1.9
SCN1A-221ENST00000641996 CYSLTR2Q9NS75 346 aa3.15□□□□□ -1.9
SCN1A-221ENST00000641996 MRPS18AQ9NVS2 196 aaKnown RBP3.15□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms