RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 PLCXD3Q63HM9 321 aa13.13□□□□□ -0.31
CLN3-264ENST00000637985 Q6ZS46 218 aa13.13□□□□□ -0.31
CLN3-264ENST00000637985 Q6ZSR3 168 aa13.13□□□□□ -0.31
CLN3-264ENST00000637985 ELMOD2Q8IZ81 293 aa13.13□□□□□ -0.31
CLN3-264ENST00000637985 AQP3Q92482 292 aa13.13□□□□□ -0.31
CLN3-264ENST00000637985 H1FXQ92522 213 aaKnown RBP13.13□□□□□ -0.31
CLN3-264ENST00000637985 GABARAPL3Q9BY60 117 aa13.13□□□□□ -0.31
CLN3-264ENST00000637985 PRSS22Q9GZN4 317 aa13.13□□□□□ -0.31
CLN3-264ENST00000637985 MRM2Q9UI43 246 aaKnown RBP13.13□□□□□ -0.31
CLN3-264ENST00000637985 GTF2A1LQ9UNN4 478 aa13.13□□□□□ -0.31
CLN3-264ENST00000637985 V9GYS6 101 aa13.13□□□□□ -0.31
CLN3-264ENST00000637985 VGLL3A8MV65 326 aa13.12□□□□□ -0.31
CLN3-264ENST00000637985 DLGAP1O14490 977 aa13.12□□□□□ -0.31
CLN3-264ENST00000637985 OR2T7P0C7T2 308 aa13.12□□□□□ -0.31
CLN3-264ENST00000637985 PSG2P11465 335 aa13.12□□□□□ -0.31
CLN3-264ENST00000637985 SELLP14151 372 aa13.12□□□□□ -0.31
CLN3-264ENST00000637985 HTR1FP30939 366 aa13.12□□□□□ -0.31
CLN3-264ENST00000637985 GABRA2P47869 451 aa13.12□□□□□ -0.31
CLN3-264ENST00000637985 CLVS2Q5SYC1 327 aa13.12□□□□□ -0.31
CLN3-264ENST00000637985 TMEM42Q69YG0 159 aa13.12□□□□□ -0.31
CLN3-264ENST00000637985 LINC00482Q8N8I6 264 aa13.12□□□□□ -0.31
CLN3-264ENST00000637985 OR2T27Q8NH04 317 aa13.12□□□□□ -0.31
CLN3-264ENST00000637985 ZNF222Q9UK12 451 aa13.12□□□□□ -0.31
CLN3-264ENST00000637985 OAZ3Q9UMX2 235 aa13.12□□□□□ -0.31
CLN3-264ENST00000637985 IGKV1D-17A0A075B6S4 117 aa13.11□□□□□ -0.31
CLN3-264ENST00000637985 TRBV23-1A0A0A0MS06 115 aa13.11□□□□□ -0.31
CLN3-264ENST00000637985 MAGEB4O15481 346 aaPredicted RBP13.11□□□□□ -0.31
CLN3-264ENST00000637985 KRT8P05787 483 aa13.11□□□□□ -0.31
CLN3-264ENST00000637985 CHRM2P08172 466 aa13.11□□□□□ -0.31
CLN3-264ENST00000637985 NDUFB7P17568 137 aa13.11□□□□□ -0.31
CLN3-264ENST00000637985 TMED1Q13445 227 aa13.11□□□□□ -0.31
CLN3-264ENST00000637985 BLMHQ13867 455 aa13.11□□□□□ -0.31
CLN3-264ENST00000637985 HAGHLQ6PII5 290 aaPredicted RBP13.11□□□□□ -0.31
CLN3-264ENST00000637985 ZNF573Q86YE8 665 aa13.11□□□□□ -0.31
CLN3-264ENST00000637985 POC1AQ8NBT0 407 aa13.11□□□□□ -0.31
CLN3-264ENST00000637985 OR5D13Q8NGL4 314 aa13.11□□□□□ -0.31
CLN3-264ENST00000637985 OR8J1Q8NGP2 316 aa13.11□□□□□ -0.31
CLN3-264ENST00000637985 OR14K1Q8NGZ2 314 aa13.11□□□□□ -0.31
CLN3-264ENST00000637985 SDSLQ96GA7 329 aa13.11□□□□□ -0.31
CLN3-264ENST00000637985 TCF19Q9Y242 345 aa13.11□□□□□ -0.31
CLN3-264ENST00000637985 LSM4Q9Y4Z0 139 aaKnown RBP13.11□□□□□ -0.31
CLN3-264ENST00000637985 TSSC4Q9Y5U2 329 aaPredicted RBP13.11□□□□□ -0.31
CLN3-264ENST00000637985 STARD9Q9P2P6 4700 aa13.1□□□□□ -0.31
CLN3-264ENST00000637985 A0A1B0GTI1 187 aa13.1□□□□□ -0.31
CLN3-264ENST00000637985 TCRBV4S1A1TA0A5B7 111 aa13.1□□□□□ -0.31
CLN3-264ENST00000637985 J3QT63 122 aa13.1□□□□□ -0.31
CLN3-264ENST00000637985 SYNGR1O43759 233 aa13.1□□□□□ -0.31
CLN3-264ENST00000637985 NOS1APO75052 506 aaPredicted RBP13.1□□□□□ -0.31
CLN3-264ENST00000637985 SULT1C4O75897 302 aa13.1□□□□□ -0.31
CLN3-264ENST00000637985 CLIC3O95833 236 aa13.1□□□□□ -0.31
CLN3-264ENST00000637985 CCL1P22362 96 aa13.1□□□□□ -0.31
CLN3-264ENST00000637985 POLR2IP36954 125 aaKnown RBP13.1□□□□□ -0.31
CLN3-264ENST00000637985 HAAOP46952 286 aa13.1□□□□□ -0.31
CLN3-264ENST00000637985 SMIM21Q3B7S5 101 aa13.1□□□□□ -0.31
CLN3-264ENST00000637985 TMEM95Q3KNT9 176 aa13.1□□□□□ -0.31
CLN3-264ENST00000637985 ACP7Q6ZNF0 438 aa13.1□□□□□ -0.31
CLN3-264ENST00000637985 PLEKHG7Q6ZR37 379 aa13.1□□□□□ -0.31
CLN3-264ENST00000637985 CCDC121Q6ZUS5 278 aa13.1□□□□□ -0.31
CLN3-264ENST00000637985 YIPF7Q8N8F6 280 aa13.1□□□□□ -0.31
CLN3-264ENST00000637985 RFKQ969G6 155 aa13.1□□□□□ -0.31
CLN3-264ENST00000637985 RIBC2Q9H4K1 309 aa13.1□□□□□ -0.31
CLN3-264ENST00000637985 NKX1-2Q9UD57 310 aaPredicted RBP13.1□□□□□ -0.31
CLN3-264ENST00000637985 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP13.1□□□□□ -0.31
CLN3-264ENST00000637985 POLDIP2Q9Y2S7 368 aa13.1□□□□□ -0.31
CLN3-264ENST00000637985 A0A1W2PQ09 198 aa13.09□□□□□ -0.31
CLN3-264ENST00000637985 A0A1W2PQL4 384 aaPredicted RBP13.09□□□□□ -0.31
CLN3-264ENST00000637985 PQLC2LA1A4F0 135 aa13.09□□□□□ -0.31
CLN3-264ENST00000637985 A6NDX4 124 aa13.09□□□□□ -0.31
CLN3-264ENST00000637985 METTL15A6NJ78 407 aa13.09□□□□□ -0.31
CLN3-264ENST00000637985 TFF1P04155 84 aa13.09□□□□□ -0.31
CLN3-264ENST00000637985 PGA5P0DJD9 388 aa13.09□□□□□ -0.31
CLN3-264ENST00000637985 ATP6V1E1P36543 226 aa13.09□□□□□ -0.31
CLN3-264ENST00000637985 VDAC2P45880 294 aaPredicted RBP13.09□□□□□ -0.31
CLN3-264ENST00000637985 CDC42P60953 191 aa13.09□□□□□ -0.31
CLN3-264ENST00000637985 BLCAPP62952 87 aa13.09□□□□□ -0.31
CLN3-264ENST00000637985 ASRGL1Q7L266 308 aa13.09□□□□□ -0.31
CLN3-264ENST00000637985 SSX6Q7RTT6 188 aa13.09□□□□□ -0.31
CLN3-264ENST00000637985 ZNRF1Q8ND25 227 aa13.09□□□□□ -0.31
CLN3-264ENST00000637985 CCDC54Q8NEL0 328 aa13.09□□□□□ -0.31
CLN3-264ENST00000637985 TRUB1Q8WWH5 349 aaKnown RBP13.09□□□□□ -0.31
CLN3-264ENST00000637985 TBX5Q99593 518 aa13.09□□□□□ -0.31
CLN3-264ENST00000637985 GPR173Q9NS66 373 aa13.09□□□□□ -0.31
CLN3-264ENST00000637985 SAC3D1A6NKF1 404 aa13.08□□□□□ -0.32
CLN3-264ENST00000637985 RFPL4AA6NLU0 287 aa13.08□□□□□ -0.32
CLN3-264ENST00000637985 RFPL4AL1F8VTS6 287 aa13.08□□□□□ -0.32
CLN3-264ENST00000637985 H0YAE9 185 aa13.08□□□□□ -0.32
CLN3-264ENST00000637985 F2RL2O00254 374 aa13.08□□□□□ -0.32
CLN3-264ENST00000637985 RPP14O95059 124 aaKnown RBP13.08□□□□□ -0.32
CLN3-264ENST00000637985 ALDOBP05062 364 aa13.08□□□□□ -0.32
CLN3-264ENST00000637985 CCDC159P0C7I6 412 aa13.08□□□□□ -0.32
CLN3-264ENST00000637985 LYL1P12980 280 aa13.08□□□□□ -0.32
CLN3-264ENST00000637985 RAB13P51153 203 aa13.08□□□□□ -0.32
CLN3-264ENST00000637985 DGCR2P98153 550 aa13.08□□□□□ -0.32
CLN3-264ENST00000637985 ARSJQ5FYB0 599 aaPredicted RBP13.08□□□□□ -0.32
CLN3-264ENST00000637985 CATSPERDQ86XM0 798 aa13.08□□□□□ -0.32
CLN3-264ENST00000637985 TMEM219Q86XT9 240 aa13.08□□□□□ -0.32
CLN3-264ENST00000637985 ZNF561Q8N587 486 aa13.08□□□□□ -0.32
CLN3-264ENST00000637985 TMEM185AQ8NFB2 350 aa13.08□□□□□ -0.32
CLN3-264ENST00000637985 OR10H4Q8NGA5 316 aa13.08□□□□□ -0.32
CLN3-264ENST00000637985 MYDGFQ969H8 173 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 100.9 ms