RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 RPS11P62280 158 aaKnown RBP eCLIP15.15■□□□□ 0.02
CLN3-259ENST00000637551 ZNF146Q15072 292 aa15.15■□□□□ 0.02
CLN3-259ENST00000637551 KISS1Q15726 138 aa15.15■□□□□ 0.02
CLN3-259ENST00000637551 TBCEQ15813 527 aaPredicted RBP15.15■□□□□ 0.02
CLN3-259ENST00000637551 TUSC1Q2TAM9 212 aa15.15■□□□□ 0.02
CLN3-259ENST00000637551 C1orf229Q6ZS94 237 aaPredicted RBP15.15■□□□□ 0.02
CLN3-259ENST00000637551 USP43Q70EL4 1123 aa15.15■□□□□ 0.02
CLN3-259ENST00000637551 SLC25A26Q70HW3 274 aa15.15■□□□□ 0.02
CLN3-259ENST00000637551 CCL13Q99616 98 aa15.15■□□□□ 0.02
CLN3-259ENST00000637551 PAK1IP1Q9NWT1 392 aaPredicted RBP15.15■□□□□ 0.02
CLN3-259ENST00000637551 MTCH1Q9NZJ7 389 aa15.15■□□□□ 0.02
CLN3-259ENST00000637551 SLC25A10Q9UBX3 287 aaPredicted RBP15.15■□□□□ 0.02
CLN3-259ENST00000637551 METRNQ9UJH8 293 aa15.15■□□□□ 0.02
CLN3-259ENST00000637551 FOXJ3Q9UPW0 622 aa15.15■□□□□ 0.02
CLN3-259ENST00000637551 SIRT4Q9Y6E7 314 aaPredicted RBP15.15■□□□□ 0.02
CLN3-259ENST00000637551 C22orf46C9J442 243 aa15.14■□□□□ 0.01
CLN3-259ENST00000637551 KDM4BO94953 1096 aa15.14■□□□□ 0.01
CLN3-259ENST00000637551 CELP19835 753 aa15.14■□□□□ 0.01
CLN3-259ENST00000637551 RBMXP38159 391 aaKnown RBP15.14■□□□□ 0.01
CLN3-259ENST00000637551 TRAM1Q15629 374 aa15.14■□□□□ 0.01
CLN3-259ENST00000637551 C9orf139Q6ZV77 190 aa15.14■□□□□ 0.01
CLN3-259ENST00000637551 ANGPTL5Q86XS5 388 aa15.14■□□□□ 0.01
CLN3-259ENST00000637551 NPRL2Q8WTW4 380 aa15.14■□□□□ 0.01
CLN3-259ENST00000637551 PHYHIPQ92561 330 aa15.14■□□□□ 0.01
CLN3-259ENST00000637551 CNBD2Q96M20 576 aa15.14■□□□□ 0.01
CLN3-259ENST00000637551 DCTN5Q9BTE1 182 aa15.14■□□□□ 0.01
CLN3-259ENST00000637551 GLS2Q9UI32 602 aa15.14■□□□□ 0.01
CLN3-259ENST00000637551 TRBV5-7A0A0A0MS05 114 aa15.13■□□□□ 0.01
CLN3-259ENST00000637551 ZNF879B4DU55 563 aa15.13■□□□□ 0.01
CLN3-259ENST00000637551 H3BSH0 61 aa15.13■□□□□ 0.01
CLN3-259ENST00000637551 CHRM2P08172 466 aa15.13■□□□□ 0.01
CLN3-259ENST00000637551 HCKP08631 526 aa15.13■□□□□ 0.01
CLN3-259ENST00000637551 IGFBP3P17936 291 aaPredicted RBP15.13■□□□□ 0.01
CLN3-259ENST00000637551 PRDX2P32119 198 aa15.13■□□□□ 0.01
CLN3-259ENST00000637551 ZP1P60852 638 aa15.13■□□□□ 0.01
CLN3-259ENST00000637551 ARMCX4Q5H9R4 360 aa15.13■□□□□ 0.01
CLN3-259ENST00000637551 DMRTC1Q5HYR2 192 aa15.13■□□□□ 0.01
CLN3-259ENST00000637551 ELP2Q6IA86 826 aa15.13■□□□□ 0.01
CLN3-259ENST00000637551 METAP1DQ6UB28 335 aaPredicted RBP15.13■□□□□ 0.01
CLN3-259ENST00000637551 BTN2A1Q7KYR7 527 aa15.13■□□□□ 0.01
CLN3-259ENST00000637551 CMTM4Q8IZR5 234 aa15.13■□□□□ 0.01
CLN3-259ENST00000637551 FAM216BQ8N7L0 139 aa15.13■□□□□ 0.01
CLN3-259ENST00000637551 NKAIN3Q8N8D7 197 aa15.13■□□□□ 0.01
CLN3-259ENST00000637551 Q8NFD4 153 aa15.13■□□□□ 0.01
CLN3-259ENST00000637551 OR5D13Q8NGL4 314 aa15.13■□□□□ 0.01
CLN3-259ENST00000637551 UNKLQ9H9P5 680 aaKnown RBP15.13■□□□□ 0.01
CLN3-259ENST00000637551 IL36GQ9NZH8 169 aa15.13■□□□□ 0.01
CLN3-259ENST00000637551 MAB21L2Q9Y586 359 aa15.13■□□□□ 0.01
CLN3-259ENST00000637551 DSCAML1Q8TD84 2053 aa15.12■□□□□ 0.01
CLN3-259ENST00000637551 A0A1W2PPH5 198 aa15.12■□□□□ 0.01
CLN3-259ENST00000637551 RFPL4AA6NLU0 287 aa15.12■□□□□ 0.01
CLN3-259ENST00000637551 RFPL4AL1F8VTS6 287 aa15.12■□□□□ 0.01
CLN3-259ENST00000637551 AVPP01185 164 aa15.12■□□□□ 0.01
CLN3-259ENST00000637551 HOXA4Q00056 320 aaPredicted RBP15.12■□□□□ 0.01
CLN3-259ENST00000637551 MLLT11Q13015 90 aaPredicted RBP15.12■□□□□ 0.01
CLN3-259ENST00000637551 TPBGQ13641 420 aa15.12■□□□□ 0.01
CLN3-259ENST00000637551 DOC2BQ14184 412 aa15.12■□□□□ 0.01
CLN3-259ENST00000637551 PDCD1Q15116 288 aa15.12■□□□□ 0.01
CLN3-259ENST00000637551 DGUOKQ16854 277 aa15.12■□□□□ 0.01
CLN3-259ENST00000637551 CRIP3Q6Q6R5 217 aa15.12■□□□□ 0.01
CLN3-259ENST00000637551 ASCL4Q6XD76 172 aa15.12■□□□□ 0.01
CLN3-259ENST00000637551 FAM58AQ8N1B3 248 aa15.12■□□□□ 0.01
CLN3-259ENST00000637551 CHST4Q8NCG5 386 aa15.12■□□□□ 0.01
CLN3-259ENST00000637551 ST8SIA4Q92187 359 aa15.12■□□□□ 0.01
CLN3-259ENST00000637551 SEH1LQ96EE3 360 aa15.12■□□□□ 0.01
CLN3-259ENST00000637551 CNTD2Q9H8S5 307 aa15.12■□□□□ 0.01
CLN3-259ENST00000637551 PCDHB16Q9NRJ7 776 aa15.12■□□□□ 0.01
CLN3-259ENST00000637551 SNTG1Q9NSN8 517 aa15.12■□□□□ 0.01
CLN3-259ENST00000637551 NUP50Q9UKX7 468 aa15.12■□□□□ 0.01
CLN3-259ENST00000637551 MEGF11A6BM72 1044 aa15.11■□□□□ 0.01
CLN3-259ENST00000637551 M0R1W7 72 aa15.11■□□□□ 0.01
CLN3-259ENST00000637551 ZNF780AO75290 641 aaPredicted RBP15.11■□□□□ 0.01
CLN3-259ENST00000637551 FCN3O75636 299 aa15.11■□□□□ 0.01
CLN3-259ENST00000637551 SC5DO75845 299 aa15.11■□□□□ 0.01
CLN3-259ENST00000637551 PLATP00750 562 aa15.11■□□□□ 0.01
CLN3-259ENST00000637551 EPHA1P21709 976 aa15.11■□□□□ 0.01
CLN3-259ENST00000637551 FPR2P25090 351 aa15.11■□□□□ 0.01
CLN3-259ENST00000637551 BDKRB2P30411 391 aa15.11■□□□□ 0.01
CLN3-259ENST00000637551 MTNR1BP49286 362 aa15.11■□□□□ 0.01
CLN3-259ENST00000637551 POU3F4P49335 361 aa15.11■□□□□ 0.01
CLN3-259ENST00000637551 METTL11BQ5VVY1 283 aa15.11■□□□□ 0.01
CLN3-259ENST00000637551 ASPHD2Q6ICH7 369 aa15.11■□□□□ 0.01
CLN3-259ENST00000637551 PPP1R35Q8TAP8 253 aa15.11■□□□□ 0.01
CLN3-259ENST00000637551 ZFAND2BQ8WV99 257 aa15.11■□□□□ 0.01
CLN3-259ENST00000637551 UFD1Q92890 307 aa15.11■□□□□ 0.01
CLN3-259ENST00000637551 EMG1Q92979 244 aaKnown RBP15.11■□□□□ 0.01
CLN3-259ENST00000637551 SLAMF9Q96A28 289 aa15.11■□□□□ 0.01
CLN3-259ENST00000637551 DERL3Q96Q80 235 aa15.11■□□□□ 0.01
CLN3-259ENST00000637551 HMG20AQ9NP66 347 aa15.11■□□□□ 0.01
CLN3-259ENST00000637551 K7N7A8 449 aa15.1■□□□□ 0.01
CLN3-259ENST00000637551 ZNF737O75373 536 aa15.1■□□□□ 0.01
CLN3-259ENST00000637551 MMP9P14780 707 aa15.1■□□□□ 0.01
CLN3-259ENST00000637551 RANBP1P43487 201 aa15.1■□□□□ 0.01
CLN3-259ENST00000637551 GABRA2P47869 451 aa15.1■□□□□ 0.01
CLN3-259ENST00000637551 SOX2P48431 317 aa15.1■□□□□ 0.01
CLN3-259ENST00000637551 MED22Q15528 200 aa15.1■□□□□ 0.01
CLN3-259ENST00000637551 NHLRC3Q5JS37 347 aa15.1■□□□□ 0.01
CLN3-259ENST00000637551 ZNF367Q7RTV3 350 aa15.1■□□□□ 0.01
CLN3-259ENST00000637551 SVOPQ8N4V2 548 aa15.1■□□□□ 0.01
CLN3-259ENST00000637551 CD177Q8N6Q3 437 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms